RNA–Protein interactions for RNA: ENST00000360001.10

SDF4-202, Transcript of stromal cell derived factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SDF4, Length 1,956 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-202ENST00000360001 MFSD6Q6ZSS7 791 aa27.39■■□□□ 1.98
SDF4-202ENST00000360001 CNNM2Q9H8M5 875 aa27.39■■□□□ 1.98
SDF4-202ENST00000360001 ADAMTSL1Q8N6G6 1762 aa27.39■■□□□ 1.97
SDF4-202ENST00000360001 USP5P45974 858 aa27.39■■□□□ 1.97
SDF4-202ENST00000360001 SBK1Q52WX2 424 aa27.39■■□□□ 1.97
SDF4-202ENST00000360001 NLGN2Q8NFZ4 835 aa27.39■■□□□ 1.97
SDF4-202ENST00000360001 SCNN1DP51172 638 aa27.38■■□□□ 1.97
SDF4-202ENST00000360001 CYB5R4Q7L1T6 521 aa27.38■■□□□ 1.97
SDF4-202ENST00000360001 ARPP21Q9UBL0 812 aaPredicted RBP27.38■■□□□ 1.97
SDF4-202ENST00000360001 NAV1Q8NEY1 1877 aa27.38■■□□□ 1.97
SDF4-202ENST00000360001 HHIPL2Q6UWX4 724 aa27.37■■□□□ 1.97
SDF4-202ENST00000360001 NECAB1Q8N987 351 aa27.37■■□□□ 1.97
SDF4-202ENST00000360001 TGFBRAP1Q8WUH2 860 aa27.37■■□□□ 1.97
SDF4-202ENST00000360001 RNF41Q9H4P4 317 aaPredicted RBP27.37■■□□□ 1.97
SDF4-202ENST00000360001 BCS1LQ9Y276 419 aa27.37■■□□□ 1.97
SDF4-202ENST00000360001 CCDC83Q8IWF9 413 aa27.37■■□□□ 1.97
SDF4-202ENST00000360001 TEX11Q8IYF3 940 aa27.37■■□□□ 1.97
SDF4-202ENST00000360001 KRT23Q9C075 422 aa27.37■■□□□ 1.97
SDF4-202ENST00000360001 GPHNQ9NQX3 736 aaPredicted RBP27.37■■□□□ 1.97
SDF4-202ENST00000360001 MCM9Q9NXL9 1143 aa27.37■■□□□ 1.97
SDF4-202ENST00000360001 IARSP41252 1262 aaKnown RBP27.36■■□□□ 1.97
SDF4-202ENST00000360001 EVX2Q03828 476 aa27.36■■□□□ 1.97
SDF4-202ENST00000360001 KIAA0825Q8IV33 1275 aa27.36■■□□□ 1.97
SDF4-202ENST00000360001 STK11IPQ8N1F8 1099 aa27.36■■□□□ 1.97
SDF4-202ENST00000360001 TAOK3Q9H2K8 898 aa27.36■■□□□ 1.97
SDF4-202ENST00000360001 NFKBIEO00221 500 aa27.35■■□□□ 1.97
SDF4-202ENST00000360001 CYP2D6P10635 497 aa27.35■■□□□ 1.97
SDF4-202ENST00000360001 APOBRQ0VD83 1088 aa27.35■■□□□ 1.97
SDF4-202ENST00000360001 TEKT1Q969V4 418 aa27.35■■□□□ 1.97
SDF4-202ENST00000360001 MRIQ9BWK5 157 aa27.35■■□□□ 1.97
SDF4-202ENST00000360001 FOCADQ5VW36 1801 aa27.35■■□□□ 1.97
SDF4-202ENST00000360001 USP17L8P0C7I0 530 aa27.35■■□□□ 1.97
SDF4-202ENST00000360001 ZSWIM5Q9P217 1185 aa27.35■■□□□ 1.97
SDF4-202ENST00000360001 DDX60LQ5H9U9 1706 aaKnown RBP27.35■■□□□ 1.97
SDF4-202ENST00000360001 KDM4AO75164 1064 aa27.34■■□□□ 1.97
SDF4-202ENST00000360001 FGRP09769 529 aa27.34■■□□□ 1.97
SDF4-202ENST00000360001 MAPKAPK5Q8IW41 473 aa27.34■■□□□ 1.97
SDF4-202ENST00000360001 ARFGEF1Q9Y6D6 1849 aa27.34■■□□□ 1.97
SDF4-202ENST00000360001 CRKP46108 304 aa27.33■■□□□ 1.97
SDF4-202ENST00000360001 EVCP57679 992 aa27.33■■□□□ 1.97
SDF4-202ENST00000360001 HDLBPQ00341 1268 aaKnown RBP27.33■■□□□ 1.97
SDF4-202ENST00000360001 ZSCAN21Q9Y5A6 473 aaPredicted RBP27.33■■□□□ 1.97
SDF4-202ENST00000360001 STK3Q13188 491 aa27.33■■□□□ 1.97
SDF4-202ENST00000360001 RRP12Q5JTH9 1297 aaKnown RBP27.33■■□□□ 1.97
SDF4-202ENST00000360001 C12orf60Q5U649 245 aa27.33■■□□□ 1.97
SDF4-202ENST00000360001 APOBEC3HQ6NTF7 200 aaKnown RBP27.33■■□□□ 1.97
SDF4-202ENST00000360001 FLT1P17948 1338 aa27.32■■□□□ 1.96
SDF4-202ENST00000360001 PCP11498 1178 aaKnown RBP27.32■■□□□ 1.96
SDF4-202ENST00000360001 NIM1KQ8IY84 436 aa27.32■■□□□ 1.96
SDF4-202ENST00000360001 ZDHHC15Q96MV8 337 aa27.32■■□□□ 1.96
SDF4-202ENST00000360001 TOMM22Q9NS69 142 aa27.32■■□□□ 1.96
SDF4-202ENST00000360001 ZNRF3Q9ULT6 936 aa27.32■■□□□ 1.96
SDF4-202ENST00000360001 GTF3C6Q969F1 213 aa27.31■■□□□ 1.96
SDF4-202ENST00000360001 TMEM87BQ96K49 555 aa27.31■■□□□ 1.96
SDF4-202ENST00000360001 DDX52Q9Y2R4 599 aaKnown RBP eCLIP27.31■■□□□ 1.961e-6■■■■□ 25.3
SDF4-202ENST00000360001 SH2B2O14492 632 aaPredicted RBP27.31■■□□□ 1.96
SDF4-202ENST00000360001 RAD17O75943 681 aa27.31■■□□□ 1.96
SDF4-202ENST00000360001 VIL1P09327 827 aaKnown RBP27.31■■□□□ 1.96
SDF4-202ENST00000360001 IGDCC4Q8TDY8 1250 aa27.31■■□□□ 1.96
SDF4-202ENST00000360001 ZNF274Q96GC6 653 aaPredicted RBP27.31■■□□□ 1.96
SDF4-202ENST00000360001 PSMD14O00487 310 aa27.3■■□□□ 1.96
SDF4-202ENST00000360001 PFKFB2O60825 505 aa27.3■■□□□ 1.96
SDF4-202ENST00000360001 RSBN1LQ6PCB5 846 aaPredicted RBP27.3■■□□□ 1.96
SDF4-202ENST00000360001 SERPINA10Q9UK55 444 aa27.3■■□□□ 1.96
SDF4-202ENST00000360001 ANGEL1Q9UNK9 670 aaKnown RBP27.3■■□□□ 1.96
SDF4-202ENST00000360001 LTBP3Q9NS15 1303 aa27.3■■□□□ 1.96
SDF4-202ENST00000360001 RAB3GAP1Q15042 981 aa27.29■■□□□ 1.96
SDF4-202ENST00000360001 CDC42EP5Q6NZY7 148 aa27.29■■□□□ 1.96
SDF4-202ENST00000360001 USP40Q9NVE5 1235 aa27.29■■□□□ 1.96
SDF4-202ENST00000360001 BRPF3Q9ULD4 1205 aa27.29■■□□□ 1.96
SDF4-202ENST00000360001 ROBO3Q96MS0 1386 aa27.29■■□□□ 1.96
SDF4-202ENST00000360001 MYO3BQ8WXR4 1341 aa27.29■■□□□ 1.96
SDF4-202ENST00000360001 MYH1P12882 1939 aa27.29■■□□□ 1.96
SDF4-202ENST00000360001 SLC3A2P08195 630 aaKnown RBP27.29■■□□□ 1.96
SDF4-202ENST00000360001 PDIA3P30101 505 aaKnown RBP27.29■■□□□ 1.96
SDF4-202ENST00000360001 SLC4A8Q2Y0W8 1093 aa27.29■■□□□ 1.96
SDF4-202ENST00000360001 ESR2Q92731 530 aa27.29■■□□□ 1.96
SDF4-202ENST00000360001 SAP30BPQ9UHR5 308 aaKnown RBP27.29■■□□□ 1.96
SDF4-202ENST00000360001 ECM29Q5VYK3 1845 aa27.29■■□□□ 1.96
SDF4-202ENST00000360001 ORC4O43929 436 aa27.28■■□□□ 1.96
SDF4-202ENST00000360001 WDHD1O75717 1129 aaPredicted RBP27.28■■□□□ 1.96
SDF4-202ENST00000360001 SCRN1Q12765 414 aa27.28■■□□□ 1.96
SDF4-202ENST00000360001 PKP1Q13835 747 aa27.28■■□□□ 1.96
SDF4-202ENST00000360001 GMLQ99445 158 aa27.28■■□□□ 1.96
SDF4-202ENST00000360001 SMC3Q9UQE7 1217 aa27.28■■□□□ 1.96
SDF4-202ENST00000360001 PCDHAC2Q9Y5I4 1007 aa27.28■■□□□ 1.96
SDF4-202ENST00000360001 PRDM1O75626 825 aa27.28■■□□□ 1.96
SDF4-202ENST00000360001 AMOTL1Q8IY63 956 aa27.28■■□□□ 1.96
SDF4-202ENST00000360001 MTA3Q9BTC8 594 aa27.28■■□□□ 1.96
SDF4-202ENST00000360001 LY9Q9HBG7 655 aa27.28■■□□□ 1.96
SDF4-202ENST00000360001 KLF18A0A0U1RQI7 1052 aa27.27■■□□□ 1.96
SDF4-202ENST00000360001 PLCD1P51178 756 aa27.27■■□□□ 1.96
SDF4-202ENST00000360001 NUCB2P80303 420 aa27.27■■□□□ 1.96
SDF4-202ENST00000360001 DTNBO60941 627 aa27.26■■□□□ 1.95
SDF4-202ENST00000360001 POLR3DP05423 398 aaPredicted RBP27.26■■□□□ 1.95
SDF4-202ENST00000360001 TMEM67Q5HYA8 995 aa27.26■■□□□ 1.95
SDF4-202ENST00000360001 FHDC1Q9C0D6 1143 aaPredicted RBP27.26■■□□□ 1.95
SDF4-202ENST00000360001 SENP2Q9HC62 589 aa27.26■■□□□ 1.95
SDF4-202ENST00000360001 IFIT3O14879 490 aaKnown RBP27.26■■□□□ 1.95
SDF4-202ENST00000360001 LIFRP42702 1097 aa27.26■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms