RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 HELLSQ9NRZ9 838 aa26.65■■□□□ 1.86
SHMT1-203ENST00000354098 DIAPH3Q9NSV4 1193 aa26.65■■□□□ 1.86
SHMT1-203ENST00000354098 PASKQ96RG2 1323 aa26.65■■□□□ 1.86
SHMT1-203ENST00000354098 ENTPD3O75355 529 aa26.64■■□□□ 1.86
SHMT1-203ENST00000354098 USP5P45974 858 aa26.64■■□□□ 1.86
SHMT1-203ENST00000354098 PPP2R3BQ9Y5P8 575 aa26.64■■□□□ 1.86
SHMT1-203ENST00000354098 FLT1P17948 1338 aa26.64■■□□□ 1.86
SHMT1-203ENST00000354098 CHMLP26374 656 aa26.63■■□□□ 1.85
SHMT1-203ENST00000354098 MCMDC2Q4G0Z9 681 aa26.63■■□□□ 1.85
SHMT1-203ENST00000354098 NBPF12Q5TAG4 269 aaPredicted RBP26.63■■□□□ 1.85
SHMT1-203ENST00000354098 SH3BP5LQ7L8J4 393 aa26.63■■□□□ 1.85
SHMT1-203ENST00000354098 SLC4A4Q9Y6R1 1079 aa26.63■■□□□ 1.85
SHMT1-203ENST00000354098 CDK5RAP2Q96SN8 1893 aa26.63■■□□□ 1.85
SHMT1-203ENST00000354098 HIP1O00291 1037 aa26.63■■□□□ 1.85
SHMT1-203ENST00000354098 NPM3O75607 178 aaKnown RBP26.63■■□□□ 1.85
SHMT1-203ENST00000354098 OSBPL5Q9H0X9 879 aaPredicted RBP26.63■■□□□ 1.85
SHMT1-203ENST00000354098 ZNF408Q9H9D4 720 aa26.63■■□□□ 1.85
SHMT1-203ENST00000354098 DDTLA6NHG4 134 aaPredicted RBP26.62■■□□□ 1.85
SHMT1-203ENST00000354098 ZNF589Q86UQ0 364 aaPredicted RBP26.62■■□□□ 1.85
SHMT1-203ENST00000354098 IL25Q9H293 177 aa26.61■■□□□ 1.85
SHMT1-203ENST00000354098 MKRN1Q9UHC7 482 aaKnown RBP26.61■■□□□ 1.85
SHMT1-203ENST00000354098 SAP30BPQ9UHR5 308 aaKnown RBP26.61■■□□□ 1.85
SHMT1-203ENST00000354098 CST9Q5W186 159 aa26.6■■□□□ 1.85
SHMT1-203ENST00000354098 ZSCAN29Q8IWY8 852 aaPredicted RBP26.6■■□□□ 1.85
SHMT1-203ENST00000354098 DCP1AQ9NPI6 582 aaPredicted RBP26.6■■□□□ 1.85
SHMT1-203ENST00000354098 PALD1Q9ULE6 856 aa26.6■■□□□ 1.85
SHMT1-203ENST00000354098 FOCADQ5VW36 1801 aa26.6■■□□□ 1.85
SHMT1-203ENST00000354098 SSC5DA1L4H1 1573 aa26.59■■□□□ 1.85
SHMT1-203ENST00000354098 GSG1L2A8MUP6 293 aa26.59■■□□□ 1.85
SHMT1-203ENST00000354098 CELF2O95319 508 aaKnown RBP26.59■■□□□ 1.85
SHMT1-203ENST00000354098 SLC4A8Q2Y0W8 1093 aa26.59■■□□□ 1.85
SHMT1-203ENST00000354098 VPS53Q5VIR6 699 aa26.59■■□□□ 1.85
SHMT1-203ENST00000354098 FZD1Q9UP38 647 aa26.59■■□□□ 1.85
SHMT1-203ENST00000354098 SLURP2P0DP57 97 aa26.58■■□□□ 1.85
SHMT1-203ENST00000354098 RPAP1Q9BWH6 1393 aaPredicted RBP26.57■■□□□ 1.84
SHMT1-203ENST00000354098 PRKG1Q13976 671 aa26.57■■□□□ 1.84
SHMT1-203ENST00000354098 CSRNP1Q96S65 589 aa26.57■■□□□ 1.84
SHMT1-203ENST00000354098 ATP8A2Q9NTI2 1148 aa26.57■■□□□ 1.84
SHMT1-203ENST00000354098 ATRNL1Q5VV63 1379 aa26.57■■□□□ 1.84
SHMT1-203ENST00000354098 CCDC171Q6TFL3 1326 aa26.57■■□□□ 1.84
SHMT1-203ENST00000354098 FOXP2O15409 715 aa26.57■■□□□ 1.84
SHMT1-203ENST00000354098 GNAT2P19087 354 aa26.57■■□□□ 1.84
SHMT1-203ENST00000354098 SUPT20HL1Q3ZLR7 823 aa26.57■■□□□ 1.84
SHMT1-203ENST00000354098 MCM9Q9NXL9 1143 aa26.57■■□□□ 1.84
SHMT1-203ENST00000354098 PATL2C9JE40 543 aaKnown RBP26.56■■□□□ 1.84
SHMT1-203ENST00000354098 APPP05067 770 aa26.56■■□□□ 1.84
SHMT1-203ENST00000354098 MIGA2Q7L4E1 593 aa26.56■■□□□ 1.84
SHMT1-203ENST00000354098 EPB41L4AQ9HCS5 686 aaPredicted RBP26.56■■□□□ 1.84
SHMT1-203ENST00000354098 C1QTNF8P60827 252 aa26.55■■□□□ 1.84
SHMT1-203ENST00000354098 EVX2Q03828 476 aa26.55■■□□□ 1.84
SHMT1-203ENST00000354098 COL2A1P02458 1487 aaPredicted RBP26.54■■□□□ 1.84
SHMT1-203ENST00000354098 NF2P35240 595 aa26.54■■□□□ 1.84
SHMT1-203ENST00000354098 MOB2Q70IA6 237 aa26.54■■□□□ 1.84
SHMT1-203ENST00000354098 DHX36Q9H2U1 1008 aaKnown RBP26.54■■□□□ 1.84
SHMT1-203ENST00000354098 CDC45O75419 566 aa26.54■■□□□ 1.84
SHMT1-203ENST00000354098 CYP2D6P10635 497 aa26.54■■□□□ 1.84
SHMT1-203ENST00000354098 IFNL3Q8IZI9 196 aa26.54■■□□□ 1.84
SHMT1-203ENST00000354098 RUFY2Q8WXA3 655 aa26.54■■□□□ 1.84
SHMT1-203ENST00000354098 HSPD1P10809 573 aaKnown RBP26.53■■□□□ 1.84
SHMT1-203ENST00000354098 PLCD1P51178 756 aa26.53■■□□□ 1.84
SHMT1-203ENST00000354098 NAV1Q8NEY1 1877 aa26.52■■□□□ 1.84
SHMT1-203ENST00000354098 DDX60LQ5H9U9 1706 aaKnown RBP26.52■■□□□ 1.84
SHMT1-203ENST00000354098 CYP2D7A0A087X1C5 515 aa26.52■■□□□ 1.84
SHMT1-203ENST00000354098 USP17L12C9JPN9 530 aa26.52■■□□□ 1.84
SHMT1-203ENST00000354098 USP17L21D6R901 530 aa26.52■■□□□ 1.84
SHMT1-203ENST00000354098 SMIM22K7EJ46 135 aa26.52■■□□□ 1.84
SHMT1-203ENST00000354098 SGSM2O43147 1006 aa26.52■■□□□ 1.84
SHMT1-203ENST00000354098 POLR3DP05423 398 aaPredicted RBP26.52■■□□□ 1.84
SHMT1-203ENST00000354098 CTR9Q6PD62 1173 aa26.52■■□□□ 1.84
SHMT1-203ENST00000354098 GBA2Q9HCG7 927 aaPredicted RBP26.52■■□□□ 1.84
SHMT1-203ENST00000354098 PI4KBQ9UBF8 816 aa26.52■■□□□ 1.84
SHMT1-203ENST00000354098 TRPM7Q96QT4 1865 aa26.52■■□□□ 1.84
SHMT1-203ENST00000354098 MYH1P12882 1939 aa26.51■■□□□ 1.84
SHMT1-203ENST00000354098 FAM196BA6NMK8 535 aa26.51■■□□□ 1.83
SHMT1-203ENST00000354098 APLP1P51693 650 aa26.51■■□□□ 1.83
SHMT1-203ENST00000354098 MFAP1P55081 439 aaKnown RBP26.51■■□□□ 1.83
SHMT1-203ENST00000354098 GIMAP6Q6P9H5 292 aa26.51■■□□□ 1.83
SHMT1-203ENST00000354098 DDRGK1Q96HY6 314 aa26.51■■□□□ 1.83
SHMT1-203ENST00000354098 RAD50Q92878 1312 aa26.51■■□□□ 1.83
SHMT1-203ENST00000354098 USP2O75604 605 aaPredicted RBP26.5■■□□□ 1.83
SHMT1-203ENST00000354098 TDO2P48775 406 aa26.5■■□□□ 1.83
SHMT1-203ENST00000354098 TTLL12Q14166 644 aaPredicted RBP26.5■■□□□ 1.83
SHMT1-203ENST00000354098 ESYT1Q9BSJ8 1104 aa26.5■■□□□ 1.83
SHMT1-203ENST00000354098 BAZ2AQ9UIF9 1905 aaKnown RBP26.5■■□□□ 1.83
SHMT1-203ENST00000354098 TMEM88BA6NKF7 163 aa26.5■■□□□ 1.83
SHMT1-203ENST00000354098 NACAP1Q9BZK3 213 aa26.5■■□□□ 1.83
SHMT1-203ENST00000354098 ANGEL1Q9UNK9 670 aaKnown RBP26.5■■□□□ 1.83
SHMT1-203ENST00000354098 PPP1R12BO60237 982 aaPredicted RBP26.49■■□□□ 1.83
SHMT1-203ENST00000354098 HLA-DOAP06340 250 aa26.49■■□□□ 1.83
SHMT1-203ENST00000354098 TTC6Q86TZ1 520 aa26.49■■□□□ 1.83
SHMT1-203ENST00000354098 C2orf69Q8N8R5 385 aa26.49■■□□□ 1.83
SHMT1-203ENST00000354098 HOOK2Q96ED9 719 aa26.49■■□□□ 1.83
SHMT1-203ENST00000354098 SIPA1L1O43166 1804 aa26.49■■□□□ 1.83
SHMT1-203ENST00000354098 UBE2Q2LH0YL09 131 aa26.48■■□□□ 1.83
SHMT1-203ENST00000354098 MAP3K10Q02779 954 aa26.48■■□□□ 1.83
SHMT1-203ENST00000354098 C12orf60Q5U649 245 aa26.48■■□□□ 1.83
SHMT1-203ENST00000354098 NAPBQ9H115 298 aa26.48■■□□□ 1.83
SHMT1-203ENST00000354098 DNAJC18Q9H819 358 aa26.48■■□□□ 1.83
SHMT1-203ENST00000354098 FGAP02671 866 aa26.47■■□□□ 1.83
SHMT1-203ENST00000354098 DCAF15Q66K64 600 aa26.47■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 89.2 ms