RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 ZRSR1Q15695 479 aaKnown RBP12.01□□□□□ -0.49
LIMA1-201ENST00000341247 PIBF1Q8WXW3 757 aa12.01□□□□□ -0.49
LIMA1-201ENST00000341247 WDHD1O75717 1129 aaPredicted RBP12.01□□□□□ -0.49
LIMA1-201ENST00000341247 ZNF75DP51815 510 aa12.01□□□□□ -0.49
LIMA1-201ENST00000341247 TRIM29Q14134 588 aa12.01□□□□□ -0.49
LIMA1-201ENST00000341247 STX1AQ16623 288 aa12.01□□□□□ -0.49
LIMA1-201ENST00000341247 ADALQ6DHV7 355 aa12.01□□□□□ -0.49
LIMA1-201ENST00000341247 AOPEPQ8N6M6 819 aa12.01□□□□□ -0.49
LIMA1-201ENST00000341247 FAM217BQ9NTX9 383 aaPredicted RBP12.01□□□□□ -0.49
LIMA1-201ENST00000341247 BCORQ6W2J9 1755 aa12.01□□□□□ -0.49
LIMA1-201ENST00000341247 ARAP2Q8WZ64 1704 aa12□□□□□ -0.49
LIMA1-201ENST00000341247 GOLGA6L6A8MZA4 724 aa12□□□□□ -0.49
LIMA1-201ENST00000341247 FMR1NBQ8N0W7 255 aaPredicted RBP12□□□□□ -0.49
LIMA1-201ENST00000341247 TMEM87BQ96K49 555 aa12□□□□□ -0.49
LIMA1-201ENST00000341247 CLIP2Q9UDT6 1046 aa12□□□□□ -0.49
LIMA1-201ENST00000341247 GNPATO15228 680 aa12□□□□□ -0.49
LIMA1-201ENST00000341247 ARID5BQ14865 1188 aa12□□□□□ -0.49
LIMA1-201ENST00000341247 WTAPQ15007 396 aa12□□□□□ -0.49
LIMA1-201ENST00000341247 SSRP1Q08945 709 aaKnown RBP12□□□□□ -0.49
LIMA1-201ENST00000341247 FILIP1Q7Z7B0 1213 aa12□□□□□ -0.49
LIMA1-201ENST00000341247 TDRD7Q8NHU6 1098 aaKnown RBP12□□□□□ -0.49
LIMA1-201ENST00000341247 KCNG4Q8TDN1 519 aa12□□□□□ -0.49
LIMA1-201ENST00000341247 SMARCC1Q92922 1105 aaPredicted RBP12□□□□□ -0.49
LIMA1-201ENST00000341247 AK7Q96M32 723 aa12□□□□□ -0.49
LIMA1-201ENST00000341247 A0A1B0GUL6 1792 aa12□□□□□ -0.49
LIMA1-201ENST00000341247 MAGEB6P1A0A0J9YX57 407 aa11.99□□□□□ -0.49
LIMA1-201ENST00000341247 ERICH2A1L162 156 aa11.99□□□□□ -0.49
LIMA1-201ENST00000341247 CDKL5O76039 1030 aa11.99□□□□□ -0.49
LIMA1-201ENST00000341247 MINPP1Q9UNW1 487 aa11.99□□□□□ -0.49
LIMA1-201ENST00000341247 BTBD18B2RXH4 712 aa11.99□□□□□ -0.49
LIMA1-201ENST00000341247 ZNF202O95125 648 aa11.99□□□□□ -0.49
LIMA1-201ENST00000341247 TPM2P07951 284 aa11.99□□□□□ -0.49
LIMA1-201ENST00000341247 PFKFB1P16118 471 aa11.99□□□□□ -0.49
LIMA1-201ENST00000341247 PPARAQ07869 468 aa11.99□□□□□ -0.49
LIMA1-201ENST00000341247 IQCB1Q15051 598 aa11.99□□□□□ -0.49
LIMA1-201ENST00000341247 NTRK3Q16288 839 aa11.99□□□□□ -0.49
LIMA1-201ENST00000341247 DPCR1Q3MIW9 517 aa11.99□□□□□ -0.49
LIMA1-201ENST00000341247 CCDC144BQ3MJ40 725 aa11.99□□□□□ -0.49
LIMA1-201ENST00000341247 BRAPQ7Z569 592 aa11.99□□□□□ -0.49
LIMA1-201ENST00000341247 NBPF5PQ86XG9 351 aaPredicted RBP11.99□□□□□ -0.49
LIMA1-201ENST00000341247 ZNF384Q8TF68 577 aa11.99□□□□□ -0.49
LIMA1-201ENST00000341247 UBAC1Q9BSL1 405 aa11.99□□□□□ -0.49
LIMA1-201ENST00000341247 MROH7-TTC4A0A0A0MT08 1334 aa11.99□□□□□ -0.49
LIMA1-201ENST00000341247 CAVIN4Q5BKX8 364 aa11.99□□□□□ -0.49
LIMA1-201ENST00000341247 ATL3Q6DD88 541 aa11.99□□□□□ -0.49
LIMA1-201ENST00000341247 POLR3EQ9NVU0 708 aa11.99□□□□□ -0.49
LIMA1-201ENST00000341247 DOCK2Q92608 1830 aa11.99□□□□□ -0.49
LIMA1-201ENST00000341247 LAMB2P55268 1798 aa11.98□□□□□ -0.49
LIMA1-201ENST00000341247 CTAGE5O15320 804 aa11.98□□□□□ -0.49
LIMA1-201ENST00000341247 RTN1Q16799 776 aa11.98□□□□□ -0.49
LIMA1-201ENST00000341247 KRT23Q9C075 422 aa11.98□□□□□ -0.49
LIMA1-201ENST00000341247 GNL3LQ9NVN8 582 aaKnown RBP11.98□□□□□ -0.49
LIMA1-201ENST00000341247 ANO10Q9NW15 660 aa11.98□□□□□ -0.49
LIMA1-201ENST00000341247 ATRNO75882 1429 aa11.98□□□□□ -0.49
LIMA1-201ENST00000341247 CICQ96RK0 1608 aaPredicted RBP11.98□□□□□ -0.49
LIMA1-201ENST00000341247 SART3Q15020 963 aaKnown RBP11.98□□□□□ -0.49
LIMA1-201ENST00000341247 FAM84BQ96KN1 310 aaPredicted RBP11.98□□□□□ -0.49
LIMA1-201ENST00000341247 BTAF1O14981 1849 aa11.98□□□□□ -0.49
LIMA1-201ENST00000341247 UBAP1LF5GYI3 381 aa11.98□□□□□ -0.49
LIMA1-201ENST00000341247 YEATS4O95619 227 aa11.98□□□□□ -0.49
LIMA1-201ENST00000341247 ALX1Q15699 326 aa11.98□□□□□ -0.49
LIMA1-201ENST00000341247 CEP57L1Q8IYX8 460 aa11.98□□□□□ -0.49
LIMA1-201ENST00000341247 SETDB2Q96T68 719 aa11.98□□□□□ -0.49
LIMA1-201ENST00000341247 SLC3A2P08195 630 aaKnown RBP11.97□□□□□ -0.49
LIMA1-201ENST00000341247 NR5A1Q13285 461 aa11.97□□□□□ -0.49
LIMA1-201ENST00000341247 AXDND1Q5T1B0 1012 aaPredicted RBP11.97□□□□□ -0.49
LIMA1-201ENST00000341247 DHX40Q8IX18 779 aaKnown RBP11.97□□□□□ -0.49
LIMA1-201ENST00000341247 CNNM2Q9H8M5 875 aa11.97□□□□□ -0.49
LIMA1-201ENST00000341247 AATFQ9NY61 560 aaKnown RBP eCLIP11.97□□□□□ -0.49
LIMA1-201ENST00000341247 WDR19Q8NEZ3 1342 aa11.97□□□□□ -0.49
LIMA1-201ENST00000341247 ZPR1O75312 459 aa11.97□□□□□ -0.49
LIMA1-201ENST00000341247 HSP90AA2PQ14568 343 aaPredicted RBP11.97□□□□□ -0.49
LIMA1-201ENST00000341247 PLA2G4DQ86XP0 818 aa11.97□□□□□ -0.49
LIMA1-201ENST00000341247 KIAA1524Q8TCG1 905 aa11.97□□□□□ -0.49
LIMA1-201ENST00000341247 SGMS1Q86VZ5 419 aa11.97□□□□□ -0.49
LIMA1-201ENST00000341247 GPR101Q96P66 508 aaPredicted RBP11.97□□□□□ -0.49
LIMA1-201ENST00000341247 MTMR7Q9Y216 660 aa11.97□□□□□ -0.49
LIMA1-201ENST00000341247 MYH15Q9Y2K3 1946 aa11.97□□□□□ -0.49
LIMA1-201ENST00000341247 SYKP43405 635 aa11.96□□□□□ -0.49
LIMA1-201ENST00000341247 SLC39A14Q15043 492 aa11.96□□□□□ -0.49
LIMA1-201ENST00000341247 TXNRD3Q86VQ6 643 aa11.96□□□□□ -0.49
LIMA1-201ENST00000341247 DIS3L2Q8IYB7 885 aaKnown RBP11.96□□□□□ -0.49
LIMA1-201ENST00000341247 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.96□□□□□ -0.49
LIMA1-201ENST00000341247 KIAA1468Q9P260 1216 aa11.96□□□□□ -0.49
LIMA1-201ENST00000341247 TNKSO95271 1327 aa11.96□□□□□ -0.49
LIMA1-201ENST00000341247 BAZ2BQ9UIF8 2168 aaKnown RBP11.96□□□□□ -0.49
LIMA1-201ENST00000341247 NMT2O60551 498 aa11.96□□□□□ -0.49
LIMA1-201ENST00000341247 GNAT2P19087 354 aa11.96□□□□□ -0.49
LIMA1-201ENST00000341247 PRDX5P30044 214 aa11.96□□□□□ -0.49
LIMA1-201ENST00000341247 LIFRP42702 1097 aa11.96□□□□□ -0.49
LIMA1-201ENST00000341247 RPS8P62241 208 aaKnown RBP11.96□□□□□ -0.49
LIMA1-201ENST00000341247 PTPN21Q16825 1174 aa11.96□□□□□ -0.49
LIMA1-201ENST00000341247 HSP90AA4PQ58FG1 418 aa11.96□□□□□ -0.49
LIMA1-201ENST00000341247 TRIM22Q8IYM9 498 aa11.96□□□□□ -0.49
LIMA1-201ENST00000341247 ZNF654Q8IZM8 581 aa11.96□□□□□ -0.49
LIMA1-201ENST00000341247 OXER1Q8TDS5 423 aa11.96□□□□□ -0.49
LIMA1-201ENST00000341247 CACTINQ8WUQ7 758 aaKnown RBP11.96□□□□□ -0.49
LIMA1-201ENST00000341247 STAG1Q8WVM7 1258 aa11.96□□□□□ -0.49
LIMA1-201ENST00000341247 C16orf45Q96MC5 204 aaPredicted RBP11.96□□□□□ -0.49
LIMA1-201ENST00000341247 NLRP3Q96P20 1036 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms