RNA–Protein interactions for RNA: ENST00000335551.11

CSMD1-201, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 12,134 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-201ENST00000335551 RBSNQ9H1K0 784 aa6.86□□□□□ -1.31
CSMD1-201ENST00000335551 NSD3Q9BZ95 1437 aa6.86□□□□□ -1.31
CSMD1-201ENST00000335551 TRIM75PA6NK02 468 aa6.86□□□□□ -1.31
CSMD1-201ENST00000335551 SUN1O94901 812 aa6.86□□□□□ -1.31
CSMD1-201ENST00000335551 WTAPQ15007 396 aa6.86□□□□□ -1.31
CSMD1-201ENST00000335551 ZBTB43O43298 467 aa6.86□□□□□ -1.31
CSMD1-201ENST00000335551 SERPINI2O75830 405 aa6.86□□□□□ -1.31
CSMD1-201ENST00000335551 TSC22D3Q99576 134 aa6.86□□□□□ -1.31
CSMD1-201ENST00000335551 DAAM1Q9Y4D1 1078 aa6.86□□□□□ -1.31
CSMD1-201ENST00000335551 FAM177BA6PVY3 158 aa6.86□□□□□ -1.31
CSMD1-201ENST00000335551 LIG3P49916 1009 aa6.86□□□□□ -1.31
CSMD1-201ENST00000335551 TTC16Q8NEE8 873 aa6.86□□□□□ -1.31
CSMD1-201ENST00000335551 POLE3Q9NRF9 147 aa6.86□□□□□ -1.31
CSMD1-201ENST00000335551 TIAM1Q13009 1591 aa6.86□□□□□ -1.31
CSMD1-201ENST00000335551 FCHSD1Q86WN1 690 aa6.86□□□□□ -1.31
CSMD1-201ENST00000335551 TMTC1Q8IUR5 882 aa6.86□□□□□ -1.31
CSMD1-201ENST00000335551 FRMD3A2A2Y4 597 aa6.86□□□□□ -1.31
CSMD1-201ENST00000335551 BAG3O95817 575 aa6.86□□□□□ -1.31
CSMD1-201ENST00000335551 TMPOP42166 694 aaKnown RBP6.86□□□□□ -1.31
CSMD1-201ENST00000335551 RARSP54136 660 aaKnown RBP6.86□□□□□ -1.31
CSMD1-201ENST00000335551 RASA3Q14644 834 aa6.86□□□□□ -1.31
CSMD1-201ENST00000335551 N4BP2L2Q92802 583 aaPredicted RBP6.86□□□□□ -1.31
CSMD1-201ENST00000335551 RAD54L2Q9Y4B4 1467 aa6.86□□□□□ -1.31
CSMD1-201ENST00000335551 ATP6V1E1P36543 226 aa6.86□□□□□ -1.31
CSMD1-201ENST00000335551 PSMD7P51665 324 aa6.86□□□□□ -1.31
CSMD1-201ENST00000335551 IQUBQ8NA54 791 aa6.86□□□□□ -1.31
CSMD1-201ENST00000335551 SLC52A1Q9NWF4 448 aa6.86□□□□□ -1.31
CSMD1-201ENST00000335551 GNGT1P63211 74 aa6.86□□□□□ -1.31
CSMD1-201ENST00000335551 KIFC3Q9BVG8 833 aa6.86□□□□□ -1.31
CSMD1-201ENST00000335551 RABEP2Q9H5N1 569 aa6.86□□□□□ -1.31
CSMD1-201ENST00000335551 CC2D2AQ9P2K1 1620 aa6.86□□□□□ -1.31
CSMD1-201ENST00000335551 PTPN23Q9H3S7 1636 aa6.86□□□□□ -1.31
CSMD1-201ENST00000335551 KRT15P19012 456 aa6.86□□□□□ -1.31
CSMD1-201ENST00000335551 ASIC3Q9UHC3 531 aa6.86□□□□□ -1.31
CSMD1-201ENST00000335551 TOP2BQ02880 1626 aa6.86□□□□□ -1.31
CSMD1-201ENST00000335551 GNAT3A8MTJ3 354 aa6.86□□□□□ -1.31
CSMD1-201ENST00000335551 EEF1DP29692 281 aaKnown RBP6.86□□□□□ -1.31
CSMD1-201ENST00000335551 DNM1Q05193 864 aaKnown RBP6.86□□□□□ -1.31
CSMD1-201ENST00000335551 C16orf87Q6PH81 154 aa6.86□□□□□ -1.31
CSMD1-201ENST00000335551 ANGPTL2Q9UKU9 493 aa6.86□□□□□ -1.31
CSMD1-201ENST00000335551 RRP15Q9Y3B9 282 aaKnown RBP6.86□□□□□ -1.31
CSMD1-201ENST00000335551 BAG2O95816 211 aa6.85□□□□□ -1.31
CSMD1-201ENST00000335551 EFHD1Q9BUP0 239 aa6.85□□□□□ -1.31
CSMD1-201ENST00000335551 DDX41Q9UJV9 622 aaKnown RBP6.85□□□□□ -1.31
CSMD1-201ENST00000335551 MRFAP1Q9Y605 127 aa6.85□□□□□ -1.31
CSMD1-201ENST00000335551 STX10O60499 249 aa6.85□□□□□ -1.31
CSMD1-201ENST00000335551 ZNF75DP51815 510 aa6.85□□□□□ -1.31
CSMD1-201ENST00000335551 MCM10Q7L590 875 aa6.85□□□□□ -1.31
CSMD1-201ENST00000335551 CCDC117Q8IWD4 279 aaPredicted RBP6.85□□□□□ -1.31
CSMD1-201ENST00000335551 ST13P4Q8IZP2 240 aaPredicted RBP6.85□□□□□ -1.31
CSMD1-201ENST00000335551 HAUS1Q96CS2 278 aa6.85□□□□□ -1.31
CSMD1-201ENST00000335551 ALG1Q9BT22 464 aa6.85□□□□□ -1.31
CSMD1-201ENST00000335551 ZRANB1Q9UGI0 708 aa6.85□□□□□ -1.31
CSMD1-201ENST00000335551 CTNNA1P35221 906 aaKnown RBP6.85□□□□□ -1.31
CSMD1-201ENST00000335551 NUCB1Q02818 461 aa6.85□□□□□ -1.31
CSMD1-201ENST00000335551 SSH1Q8WYL5 1049 aa6.85□□□□□ -1.31
CSMD1-201ENST00000335551 MAP3K7O43318 606 aa6.85□□□□□ -1.31
CSMD1-201ENST00000335551 NOP14P78316 857 aaKnown RBP6.85□□□□□ -1.31
CSMD1-201ENST00000335551 HDAC1Q13547 482 aaPredicted RBP6.85□□□□□ -1.31
CSMD1-201ENST00000335551 CCDC197Q8NCU1 140 aa6.85□□□□□ -1.31
CSMD1-201ENST00000335551 GIMAP4Q9NUV9 329 aa6.85□□□□□ -1.31
CSMD1-201ENST00000335551 CNNM4Q6P4Q7 775 aa6.85□□□□□ -1.31
CSMD1-201ENST00000335551 CFAP61Q8NHU2 1237 aa6.85□□□□□ -1.31
CSMD1-201ENST00000335551 LRGUKQ96M69 825 aa6.85□□□□□ -1.31
CSMD1-201ENST00000335551 C6orf50Q9HD87 102 aa6.85□□□□□ -1.31
CSMD1-201ENST00000335551 CTNND2Q9UQB3 1225 aa6.85□□□□□ -1.31
CSMD1-201ENST00000335551 RPS6KA2Q15349 733 aa6.85□□□□□ -1.31
CSMD1-201ENST00000335551 GRAMD4Q6IC98 578 aa6.85□□□□□ -1.31
CSMD1-201ENST00000335551 A0A1B0GW55 424 aa6.85□□□□□ -1.31
CSMD1-201ENST00000335551 TTC4O95801 387 aa6.85□□□□□ -1.31
CSMD1-201ENST00000335551 DUX4L2P0CJ85 424 aa6.85□□□□□ -1.31
CSMD1-201ENST00000335551 DUX4L3P0CJ86 424 aa6.85□□□□□ -1.31
CSMD1-201ENST00000335551 DUX4L4P0CJ87 422 aa6.85□□□□□ -1.31
CSMD1-201ENST00000335551 DUX4L5P0CJ88 424 aa6.85□□□□□ -1.31
CSMD1-201ENST00000335551 DUX4L6P0CJ89 424 aa6.85□□□□□ -1.31
CSMD1-201ENST00000335551 DUX4L7P0CJ90 424 aa6.85□□□□□ -1.31
CSMD1-201ENST00000335551 KRT2P35908 639 aa6.85□□□□□ -1.31
CSMD1-201ENST00000335551 NCBP1Q09161 790 aaKnown RBP6.85□□□□□ -1.31
CSMD1-201ENST00000335551 TTC19Q6DKK2 380 aaPredicted RBP6.85□□□□□ -1.31
CSMD1-201ENST00000335551 ZC3H15Q8WU90 426 aaKnown RBP6.85□□□□□ -1.31
CSMD1-201ENST00000335551 ANKIB1Q9P2G1 1089 aa6.85□□□□□ -1.31
CSMD1-201ENST00000335551 DUX4Q9UBX2 424 aa6.85□□□□□ -1.31
CSMD1-201ENST00000335551 ANKFY1Q9P2R3 1169 aa6.85□□□□□ -1.31
CSMD1-201ENST00000335551 MYH6P13533 1939 aa6.85□□□□□ -1.31
CSMD1-201ENST00000335551 MARCKSP29966 332 aaPredicted RBP6.85□□□□□ -1.31
CSMD1-201ENST00000335551 RAPGEF1Q13905 1077 aa6.85□□□□□ -1.31
CSMD1-201ENST00000335551 NME8Q8N427 588 aa6.85□□□□□ -1.31
CSMD1-201ENST00000335551 JRKLQ9Y4A0 524 aa6.85□□□□□ -1.31
CSMD1-201ENST00000335551 ITSN2Q9NZM3 1697 aa6.85□□□□□ -1.31
CSMD1-201ENST00000335551 ESR2Q92731 530 aa6.84□□□□□ -1.31
CSMD1-201ENST00000335551 STARD3NLO95772 234 aa6.84□□□□□ -1.31
CSMD1-201ENST00000335551 NBPF6Q5VWK0 638 aa6.84□□□□□ -1.31
CSMD1-201ENST00000335551 NBPF4Q96M43 638 aa6.84□□□□□ -1.31
CSMD1-201ENST00000335551 EPRSP07814 1512 aaKnown RBP6.84□□□□□ -1.31
CSMD1-201ENST00000335551 EFCAB8A8MWE9 144 aa6.84□□□□□ -1.31
CSMD1-201ENST00000335551 SART1O43290 800 aaKnown RBP6.84□□□□□ -1.31
CSMD1-201ENST00000335551 WDR44Q5JSH3 913 aa6.84□□□□□ -1.31
CSMD1-201ENST00000335551 HEATR3Q7Z4Q2 680 aa6.84□□□□□ -1.31
CSMD1-201ENST00000335551 CTAGE3PQ8IX95 158 aa6.84□□□□□ -1.31
CSMD1-201ENST00000335551 CCHCR1Q8TD31 782 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms