RNA–Protein interactions for RNA: ENST00000316763.7

VRK3-201, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 1,938 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-201ENST00000316763 DDX11Q96FC9 970 aa16.59■□□□□ 0.25
VRK3-201ENST00000316763 RTFDC1Q9BY42 306 aaPredicted RBP16.59■□□□□ 0.25
VRK3-201ENST00000316763 DDX19AQ9NUU7 478 aaKnown RBP16.59■□□□□ 0.25
VRK3-201ENST00000316763 LRP2BPQ9P2M1 347 aa16.59■□□□□ 0.25
VRK3-201ENST00000316763 TFIP11Q9UBB9 837 aaKnown RBP16.59■□□□□ 0.25
VRK3-201ENST00000316763 GPAA1O43292 621 aa16.58■□□□□ 0.25
VRK3-201ENST00000316763 NSUN7Q8NE18 718 aaKnown RBP16.58■□□□□ 0.25
VRK3-201ENST00000316763 MYO5AQ9Y4I1 1855 aaKnown RBP16.58■□□□□ 0.24
VRK3-201ENST00000316763 FBXL16Q8N461 479 aa16.58■□□□□ 0.24
VRK3-201ENST00000316763 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.58■□□□□ 0.24
VRK3-201ENST00000316763 USP25Q9UHP3 1055 aa16.58■□□□□ 0.24
VRK3-201ENST00000316763 KDM4AO75164 1064 aa16.57■□□□□ 0.24
VRK3-201ENST00000316763 IL1R1P14778 569 aa16.57■□□□□ 0.24
VRK3-201ENST00000316763 PSMD1Q99460 953 aa16.57■□□□□ 0.24
VRK3-201ENST00000316763 SALL1Q9NSC2 1324 aa16.57■□□□□ 0.24
VRK3-201ENST00000316763 PTPDC1A2A3K4 754 aa16.57■□□□□ 0.24
VRK3-201ENST00000316763 NFKBIEO00221 500 aa16.57■□□□□ 0.24
VRK3-201ENST00000316763 RIMBP2O15034 1052 aa16.57■□□□□ 0.24
VRK3-201ENST00000316763 IGSF3O75054 1194 aa16.57■□□□□ 0.24
VRK3-201ENST00000316763 ADCY5O95622 1261 aa16.57■□□□□ 0.24
VRK3-201ENST00000316763 ATL3Q6DD88 541 aa16.57■□□□□ 0.24
VRK3-201ENST00000316763 TNMDQ9H2S6 317 aa16.57■□□□□ 0.24
VRK3-201ENST00000316763 CD209Q9NNX6 404 aa16.57■□□□□ 0.24
VRK3-201ENST00000316763 ABCF2Q9UG63 623 aa16.57■□□□□ 0.24
VRK3-201ENST00000316763 NAP1L2Q9ULW6 460 aaPredicted RBP16.57■□□□□ 0.24
VRK3-201ENST00000316763 MYH15Q9Y2K3 1946 aa16.57■□□□□ 0.24
VRK3-201ENST00000316763 CCDC88AQ3V6T2 1871 aa16.56■□□□□ 0.24
VRK3-201ENST00000316763 LIG1P18858 919 aa16.56■□□□□ 0.24
VRK3-201ENST00000316763 TMED8Q6PL24 325 aaPredicted RBP16.56■□□□□ 0.24
VRK3-201ENST00000316763 ARHGAP27Q6ZUM4 889 aa16.56■□□□□ 0.24
VRK3-201ENST00000316763 SUPT20HQ8NEM7 779 aa16.56■□□□□ 0.24
VRK3-201ENST00000316763 STRBPQ96SI9 672 aaKnown RBP16.56■□□□□ 0.24
VRK3-201ENST00000316763 TPM2P07951 284 aa16.55■□□□□ 0.24
VRK3-201ENST00000316763 PDIA3P30101 505 aaKnown RBP16.55■□□□□ 0.24
VRK3-201ENST00000316763 GPR162Q16538 588 aa16.55■□□□□ 0.24
VRK3-201ENST00000316763 WDR66Q8TBY9 1149 aa16.55■□□□□ 0.24
VRK3-201ENST00000316763 BICD2Q8TD16 824 aa16.55■□□□□ 0.24
VRK3-201ENST00000316763 ZNF396Q96N95 335 aaPredicted RBP16.55■□□□□ 0.24
VRK3-201ENST00000316763 EYA3Q99504 573 aa16.55■□□□□ 0.24
VRK3-201ENST00000316763 ZC3H12CQ9C0D7 883 aaKnown RBP16.55■□□□□ 0.24
VRK3-201ENST00000316763 ZNF277Q9NRM2 450 aaPredicted RBP16.55■□□□□ 0.24
VRK3-201ENST00000316763 DACT1Q9NYF0 836 aa16.55■□□□□ 0.24
VRK3-201ENST00000316763 RAI14Q9P0K7 980 aa16.55■□□□□ 0.24
VRK3-201ENST00000316763 CCT2P78371 535 aaKnown RBP16.55■□□□□ 0.24
VRK3-201ENST00000316763 TTLL5Q6EMB2 1281 aa16.55■□□□□ 0.24
VRK3-201ENST00000316763 ZNF384Q8TF68 577 aa16.55■□□□□ 0.24
VRK3-201ENST00000316763 AIDAQ96BJ3 306 aa16.55■□□□□ 0.24
VRK3-201ENST00000316763 TAOK3Q9H2K8 898 aa16.55■□□□□ 0.24
VRK3-201ENST00000316763 CLSTN2Q9H4D0 955 aa16.55■□□□□ 0.24
VRK3-201ENST00000316763 DHX16O60231 1041 aaKnown RBP16.54■□□□□ 0.24
VRK3-201ENST00000316763 CTDNEP1O95476 244 aa16.54■□□□□ 0.24
VRK3-201ENST00000316763 EVCP57679 992 aa16.54■□□□□ 0.24
VRK3-201ENST00000316763 RASSF7Q02833 373 aa16.54■□□□□ 0.24
VRK3-201ENST00000316763 CHAF1AQ13111 956 aaPredicted RBP16.54■□□□□ 0.24
VRK3-201ENST00000316763 AOC3Q16853 763 aa16.54■□□□□ 0.24
VRK3-201ENST00000316763 NSUN4Q96CB9 384 aaKnown RBP16.54■□□□□ 0.24
VRK3-201ENST00000316763 LTBP3Q9NS15 1303 aa16.53■□□□□ 0.24
VRK3-201ENST00000316763 FGAP02671 866 aa16.53■□□□□ 0.24
VRK3-201ENST00000316763 CYP7A1P22680 504 aa16.53■□□□□ 0.24
VRK3-201ENST00000316763 TERF1P54274 439 aa16.53■□□□□ 0.24
VRK3-201ENST00000316763 SPTY2D1Q68D10 685 aaPredicted RBP16.53■□□□□ 0.24
VRK3-201ENST00000316763 ADGRA1Q86SQ6 560 aa16.53■□□□□ 0.24
VRK3-201ENST00000316763 NCOA7Q8NI08 942 aa16.53■□□□□ 0.24
VRK3-201ENST00000316763 FAM200AQ8TCP9 573 aa16.53■□□□□ 0.24
VRK3-201ENST00000316763 COA1Q9GZY4 146 aa16.53■□□□□ 0.24
VRK3-201ENST00000316763 CHD4Q14839 1912 aa16.53■□□□□ 0.24
VRK3-201ENST00000316763 WDR19Q8NEZ3 1342 aa16.53■□□□□ 0.24
VRK3-201ENST00000316763 ZNF213O14771 459 aa16.53■□□□□ 0.24
VRK3-201ENST00000316763 PPIP5K2O43314 1243 aa16.53■□□□□ 0.24
VRK3-201ENST00000316763 MBD4O95243 580 aa16.53■□□□□ 0.24
VRK3-201ENST00000316763 PRDX5P30044 214 aa16.53■□□□□ 0.24
VRK3-201ENST00000316763 MECOMQ03112 1051 aa16.53■□□□□ 0.24
VRK3-201ENST00000316763 TYRO3Q06418 890 aa16.53■□□□□ 0.24
VRK3-201ENST00000316763 KIAA2012Q0VF49 1180 aa16.53■□□□□ 0.24
VRK3-201ENST00000316763 CAMK4Q16566 473 aa16.53■□□□□ 0.24
VRK3-201ENST00000316763 RALYLQ86SE5 291 aaKnown RBP16.53■□□□□ 0.24
VRK3-201ENST00000316763 SBF1O95248 1867 aa16.52■□□□□ 0.24
VRK3-201ENST00000316763 ZMYM6O95789 1325 aa16.52■□□□□ 0.24
VRK3-201ENST00000316763 TPM3P06753 285 aa16.52■□□□□ 0.23
VRK3-201ENST00000316763 PRELPP51888 382 aa16.52■□□□□ 0.23
VRK3-201ENST00000316763 ALX1Q15699 326 aa16.52■□□□□ 0.23
VRK3-201ENST00000316763 DOK7Q18PE1 504 aa16.52■□□□□ 0.23
VRK3-201ENST00000316763 RBM43Q6ZSC3 357 aaKnown RBP16.52■□□□□ 0.23
VRK3-201ENST00000316763 PGBD1Q96JS3 809 aa16.52■□□□□ 0.23
VRK3-201ENST00000316763 NCOA5Q9HCD5 579 aaKnown RBP16.52■□□□□ 0.23
VRK3-201ENST00000316763 RCOR1Q9UKL0 485 aa16.52■□□□□ 0.23
VRK3-201ENST00000316763 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.52■□□□□ 0.235e-6■■■■□ 19.3
VRK3-201ENST00000316763 MYH13Q9UKX3 1938 aa16.52■□□□□ 0.23
VRK3-201ENST00000316763 PATL2C9JE40 543 aaKnown RBP16.51■□□□□ 0.23
VRK3-201ENST00000316763 PRC1O43663 620 aa16.51■□□□□ 0.23
VRK3-201ENST00000316763 GNAT2P19087 354 aa16.51■□□□□ 0.23
VRK3-201ENST00000316763 IARSP41252 1262 aaKnown RBP16.51■□□□□ 0.23
VRK3-201ENST00000316763 HAND2P61296 217 aa16.51■□□□□ 0.23
VRK3-201ENST00000316763 PLCB2Q00722 1185 aa16.51■□□□□ 0.23
VRK3-201ENST00000316763 SASS6Q6UVJ0 657 aa16.51■□□□□ 0.23
VRK3-201ENST00000316763 CHST3Q7LGC8 479 aa16.51■□□□□ 0.23
VRK3-201ENST00000316763 RIOK1Q9BRS2 568 aaKnown RBP16.51■□□□□ 0.23
VRK3-201ENST00000316763 VPS33BQ9H267 617 aa16.51■□□□□ 0.23
VRK3-201ENST00000316763 ARMT1Q9H993 441 aa16.51■□□□□ 0.23
VRK3-201ENST00000316763 JAG2Q9Y219 1238 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms