RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 CCDC117Q8IWD4 279 aaPredicted RBP15.44■□□□□ 0.06
CSPG4-201ENST00000308508 OSCARQ8IYS5 282 aa15.44■□□□□ 0.06
CSPG4-201ENST00000308508 MRRFQ96E11 262 aaKnown RBP15.44■□□□□ 0.06
CSPG4-201ENST00000308508 CALUO43852 315 aaPredicted RBP15.44■□□□□ 0.06
CSPG4-201ENST00000308508 ANKRD44Q8N8A2 993 aa15.44■□□□□ 0.06
CSPG4-201ENST00000308508 CREB3L3Q68CJ9 461 aa15.44■□□□□ 0.06
CSPG4-201ENST00000308508 FAF1Q9UNN5 650 aaPredicted RBP15.44■□□□□ 0.06
CSPG4-201ENST00000308508 A0A1B0GVL5 298 aa15.44■□□□□ 0.06
CSPG4-201ENST00000308508 DHX32Q7L7V1 743 aaKnown RBP15.44■□□□□ 0.06
CSPG4-201ENST00000308508 PPP4R1Q8TF05 950 aa15.44■□□□□ 0.06
CSPG4-201ENST00000308508 SPATS2LQ9NUQ6 558 aaKnown RBP15.44■□□□□ 0.06
CSPG4-201ENST00000308508 TPX2Q9ULW0 747 aaKnown RBP15.44■□□□□ 0.06
CSPG4-201ENST00000308508 GOLGA8KD6RF30 607 aa15.44■□□□□ 0.06
CSPG4-201ENST00000308508 HSP90AA5PQ58FG0 334 aa15.44■□□□□ 0.06
CSPG4-201ENST00000308508 STAG1Q8WVM7 1258 aa15.44■□□□□ 0.06
CSPG4-201ENST00000308508 CACYBPQ9HB71 228 aaKnown RBP15.44■□□□□ 0.06
CSPG4-201ENST00000308508 NCOA1Q15788 1441 aa15.43■□□□□ 0.06
CSPG4-201ENST00000308508 SMIM24O75264 130 aa15.43■□□□□ 0.06
CSPG4-201ENST00000308508 RNASE9P60153 205 aaKnown RBP15.43■□□□□ 0.06
CSPG4-201ENST00000308508 CUL4BQ13620 913 aa15.43■□□□□ 0.06
CSPG4-201ENST00000308508 ZBTB3Q9H5J0 574 aa15.43■□□□□ 0.06
CSPG4-201ENST00000308508 RABEP2Q9H5N1 569 aa15.43■□□□□ 0.06
CSPG4-201ENST00000308508 PFDN1O60925 122 aa15.43■□□□□ 0.06
CSPG4-201ENST00000308508 KRT71Q3SY84 523 aa15.43■□□□□ 0.06
CSPG4-201ENST00000308508 TACO1Q9BSH4 297 aaKnown RBP15.43■□□□□ 0.06
CSPG4-201ENST00000308508 FANCCQ00597 558 aa15.43■□□□□ 0.06
CSPG4-201ENST00000308508 NMIQ13287 307 aaPredicted RBP15.43■□□□□ 0.06
CSPG4-201ENST00000308508 RGS16O15492 202 aaPredicted RBP15.43■□□□□ 0.06
CSPG4-201ENST00000308508 DIXDC1Q155Q3 683 aa15.43■□□□□ 0.06
CSPG4-201ENST00000308508 HAUS2Q9NVX0 235 aa15.43■□□□□ 0.06
CSPG4-201ENST00000308508 LRRD1A4D1F6 860 aa15.43■□□□□ 0.06
CSPG4-201ENST00000308508 CA8P35219 290 aa15.43■□□□□ 0.06
CSPG4-201ENST00000308508 NAIPQ13075 1403 aa15.43■□□□□ 0.06
CSPG4-201ENST00000308508 VWA3AA6NCI4 1184 aa15.43■□□□□ 0.06
CSPG4-201ENST00000308508 SNCBQ16143 134 aa15.43■□□□□ 0.06
CSPG4-201ENST00000308508 VPS16Q9H269 839 aa15.43■□□□□ 0.06
CSPG4-201ENST00000308508 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.43■□□□□ 0.06
CSPG4-201ENST00000308508 STX2P32856 288 aa15.42■□□□□ 0.06
CSPG4-201ENST00000308508 TRIM31Q9BZY9 425 aa15.42■□□□□ 0.06
CSPG4-201ENST00000308508 APOBRQ0VD83 1088 aa15.42■□□□□ 0.06
CSPG4-201ENST00000308508 ANKLE2Q86XL3 938 aa15.42■□□□□ 0.06
CSPG4-201ENST00000308508 MAIP1Q8WWC4 291 aa15.42■□□□□ 0.06
CSPG4-201ENST00000308508 IQCDQ96DY2 449 aa15.42■□□□□ 0.06
CSPG4-201ENST00000308508 FNBP1Q96RU3 617 aa15.42■□□□□ 0.06
CSPG4-201ENST00000308508 NAA16Q6N069 864 aaPredicted RBP15.42■□□□□ 0.06
CSPG4-201ENST00000308508 ATP2B3Q16720 1220 aa15.42■□□□□ 0.06
CSPG4-201ENST00000308508 GOLGA5Q8TBA6 731 aa15.42■□□□□ 0.06
CSPG4-201ENST00000308508 FLOT1O75955 427 aa15.42■□□□□ 0.06
CSPG4-201ENST00000308508 XAB2Q9HCS7 855 aaKnown RBP15.42■□□□□ 0.06
CSPG4-201ENST00000308508 MAGEB6P1A0A0J9YX57 407 aa15.42■□□□□ 0.06
CSPG4-201ENST00000308508 ATP5J2-PTCD1G3V325 749 aa15.42■□□□□ 0.06
CSPG4-201ENST00000308508 KRT9P35527 623 aa15.42■□□□□ 0.06
CSPG4-201ENST00000308508 RASEFQ8IZ41 740 aa15.42■□□□□ 0.06
CSPG4-201ENST00000308508 HOMER3Q9NSC5 361 aa15.42■□□□□ 0.06
CSPG4-201ENST00000308508 TBC1D8O95759 1140 aa15.41■□□□□ 0.06
CSPG4-201ENST00000308508 SLC9C2Q5TAH2 1124 aa15.41■□□□□ 0.06
CSPG4-201ENST00000308508 TNNI2P48788 182 aa15.41■□□□□ 0.06
CSPG4-201ENST00000308508 PAK1Q13153 545 aa15.41■□□□□ 0.06
CSPG4-201ENST00000308508 USHBP1Q8N6Y0 703 aa15.41■□□□□ 0.06
CSPG4-201ENST00000308508 MLKLQ8NB16 471 aa15.41■□□□□ 0.06
CSPG4-201ENST00000308508 DACT3Q96B18 629 aaPredicted RBP15.41■□□□□ 0.06
CSPG4-201ENST00000308508 CCDC105Q8IYK2 499 aa15.41■□□□□ 0.06
CSPG4-201ENST00000308508 DDX41Q9UJV9 622 aaKnown RBP15.41■□□□□ 0.06
CSPG4-201ENST00000308508 ZNF445P59923 1031 aa15.41■□□□□ 0.06
CSPG4-201ENST00000308508 DBN1Q16643 649 aa15.41■□□□□ 0.06
CSPG4-201ENST00000308508 AKNAD1Q5T1N1 836 aa15.41■□□□□ 0.06
CSPG4-201ENST00000308508 NUCKS1Q9H1E3 243 aaKnown RBP15.41■□□□□ 0.06
CSPG4-201ENST00000308508 IL15P40933 162 aaPredicted RBP15.41■□□□□ 0.06
CSPG4-201ENST00000308508 SMTNP53814 917 aa15.41■□□□□ 0.06
CSPG4-201ENST00000308508 CCDC89Q8N998 374 aa15.41■□□□□ 0.06
CSPG4-201ENST00000308508 CLSTN2Q9H4D0 955 aa15.41■□□□□ 0.06
CSPG4-201ENST00000308508 MED4Q9NPJ6 270 aa15.41■□□□□ 0.06
CSPG4-201ENST00000308508 PPP1R9AQ9ULJ8 1098 aa15.41■□□□□ 0.06
CSPG4-201ENST00000308508 PPP2R5EQ16537 467 aa15.41■□□□□ 0.06
CSPG4-201ENST00000308508 RPS6KA1Q15418 735 aa15.4■□□□□ 0.06
CSPG4-201ENST00000308508 ANKRD13DQ6ZTN6 518 aa15.4■□□□□ 0.06
CSPG4-201ENST00000308508 SND1Q7KZF4 910 aaKnown RBP eCLIP15.4■□□□□ 0.06
CSPG4-201ENST00000308508 FCHSD1Q86WN1 690 aa15.4■□□□□ 0.06
CSPG4-201ENST00000308508 CEP104O60308 925 aa15.4■□□□□ 0.06
CSPG4-201ENST00000308508 LLPHQ9BRT6 129 aaKnown RBP15.4■□□□□ 0.06
CSPG4-201ENST00000308508 SPECC1L-ADORA2AF8WAN1 911 aa15.4■□□□□ 0.06
CSPG4-201ENST00000308508 PEX19P40855 299 aa15.4■□□□□ 0.06
CSPG4-201ENST00000308508 INPP1P49441 399 aa15.4■□□□□ 0.06
CSPG4-201ENST00000308508 CSGALNACT2Q8N6G5 542 aa15.4■□□□□ 0.06
CSPG4-201ENST00000308508 RRAGDQ9NQL2 400 aaPredicted RBP15.4■□□□□ 0.06
CSPG4-201ENST00000308508 STK24Q9Y6E0 443 aa15.4■□□□□ 0.06
CSPG4-201ENST00000308508 MAP3K1Q13233 1512 aa15.4■□□□□ 0.06
CSPG4-201ENST00000308508 ARHGAP42A6NI28 874 aa15.4■□□□□ 0.06
CSPG4-201ENST00000308508 DAPK3O43293 454 aa15.4■□□□□ 0.06
CSPG4-201ENST00000308508 KCNH3Q9ULD8 1083 aa15.4■□□□□ 0.06
CSPG4-201ENST00000308508 AFG3L2Q9Y4W6 797 aa15.4■□□□□ 0.06
CSPG4-201ENST00000308508 PCDHB15Q9Y5E8 787 aa15.4■□□□□ 0.06
CSPG4-201ENST00000308508 GRM8O00222 908 aa15.4■□□□□ 0.06
CSPG4-201ENST00000308508 SNRPA1P09661 255 aaKnown RBP15.4■□□□□ 0.06
CSPG4-201ENST00000308508 CTNNA1P35221 906 aaKnown RBP15.4■□□□□ 0.06
CSPG4-201ENST00000308508 BIRC3Q13489 604 aa15.4■□□□□ 0.06
CSPG4-201ENST00000308508 PHBP35232 272 aa15.4■□□□□ 0.06
CSPG4-201ENST00000308508 ATP8B2P98198 1209 aa15.4■□□□□ 0.06
CSPG4-201ENST00000308508 PDE4DQ08499 809 aa15.4■□□□□ 0.06
CSPG4-201ENST00000308508 RASIP1Q5U651 963 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms