RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, human

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR3-208	ENST00000474426	FKBP8	Q14318	412 aa		5.08	□□□□□ -1.6
UBR3-208	ENST00000474426	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	5.08	□□□□□ -1.6
UBR3-208	ENST00000474426	TICAM2	Q86XR7	235 aa		5.07	□□□□□ -1.6
UBR3-208	ENST00000474426	ZNF592	Q92610	1267 aa		5.07	□□□□□ -1.6
UBR3-208	ENST00000474426	ZMYND15	Q9H091	742 aa		5.07	□□□□□ -1.6
UBR3-208	ENST00000474426	ZNF692	Q9BU19	519 aa	Predicted RBP	5.07	□□□□□ -1.6
UBR3-208	ENST00000474426	DEK	P35659	375 aa	Known RBP	5.07	□□□□□ -1.6
UBR3-208	ENST00000474426	CLSPN	Q9HAW4	1339 aa		5.06	□□□□□ -1.6
UBR3-208	ENST00000474426	CHRM1	P11229	460 aa	Predicted RBP	5.05	□□□□□ -1.6
UBR3-208	ENST00000474426	ZNF428	Q96B54	188 aa		5.05	□□□□□ -1.6
UBR3-208	ENST00000474426	ADRA2B	P18089	450 aa		5.04	□□□□□ -1.6
UBR3-208	ENST00000474426	PRDM10	Q9NQV6	1147 aa		5.04	□□□□□ -1.6
UBR3-208	ENST00000474426	ACIN1	Q9UKV3	1341 aa	Known RBP	5.04	□□□□□ -1.6
UBR3-208	ENST00000474426	CNPY4	Q8N129	248 aa		5.02	□□□□□ -1.61
UBR3-208	ENST00000474426	C1orf115	Q9H7X2	142 aa		5.02	□□□□□ -1.61
UBR3-208	ENST00000474426	NAP1L2	Q9ULW6	460 aa	Predicted RBP	5.02	□□□□□ -1.61
UBR3-208	ENST00000474426	CERS3	Q8IU89	383 aa		5.02	□□□□□ -1.61
UBR3-208	ENST00000474426	PPARGC1B	Q86YN6	1023 aa	Known RBP	5.01	□□□□□ -1.61
UBR3-208	ENST00000474426	PRDM16	Q9HAZ2	1276 aa		5.01	□□□□□ -1.61
UBR3-208	ENST00000474426	ARID3A	Q99856	593 aa		5	□□□□□ -1.61
UBR3-208	ENST00000474426	KCNG1	Q9UIX4	513 aa		5	□□□□□ -1.61
UBR3-208	ENST00000474426	TEX2	Q8IWB9	1127 aa		5	□□□□□ -1.61
UBR3-208	ENST00000474426	SECISBP2L	Q93073	1101 aa	Known RBP	5	□□□□□ -1.61
UBR3-208	ENST00000474426	CWC22	Q9HCG8	908 aa	Known RBP	5	□□□□□ -1.61
UBR3-208	ENST00000474426	CLSTN1	O94985	981 aa		4.99	□□□□□ -1.61
UBR3-208	ENST00000474426	NCL	P19338	710 aa	Known RBP	4.99	□□□□□ -1.61
UBR3-208	ENST00000474426	RNF216	Q9NWF9	866 aa	Predicted RBP	4.99	□□□□□ -1.61
UBR3-208	ENST00000474426	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	4.98	□□□□□ -1.61
UBR3-208	ENST00000474426	RGS22	Q8NE09	1264 aa		4.97	□□□□□ -1.61
UBR3-208	ENST00000474426	ZBTB7C	A1YPR0	619 aa		4.97	□□□□□ -1.61
UBR3-208	ENST00000474426	NPM1	P06748	294 aa	Known RBP eCLIP	4.97	□□□□□ -1.61
UBR3-208	ENST00000474426	PSMD1	Q99460	953 aa		4.96	□□□□□ -1.62
UBR3-208	ENST00000474426	NEUROD1	Q13562	356 aa		4.96	□□□□□ -1.62
UBR3-208	ENST00000474426	FAM43B	Q6ZT52	329 aa	Predicted RBP	4.96	□□□□□ -1.62
UBR3-208	ENST00000474426	IPO4	Q8TEX9	1081 aa	Known RBP	4.96	□□□□□ -1.62
UBR3-208	ENST00000474426	CHMP4B	Q9H444	224 aa	Known RBP	4.96	□□□□□ -1.62
UBR3-208	ENST00000474426	CC2D2B	Q6DHV5	1058 aa		4.95	□□□□□ -1.62
UBR3-208	ENST00000474426	FAM177A1	Q8N128	213 aa	Predicted RBP	4.95	□□□□□ -1.62
UBR3-208	ENST00000474426	TSHZ2	Q9NRE2	1034 aa		4.94	□□□□□ -1.62
UBR3-208	ENST00000474426	NPM3	O75607	178 aa	Known RBP	4.94	□□□□□ -1.62
UBR3-208	ENST00000474426	GRIPAP1	Q4V328	841 aa		4.94	□□□□□ -1.62
UBR3-208	ENST00000474426	GLIPR1L2	Q4G1C9	344 aa		4.93	□□□□□ -1.62
UBR3-208	ENST00000474426	MTMR7	Q9Y216	660 aa		4.93	□□□□□ -1.62
UBR3-208	ENST00000474426	NBR1	Q14596	966 aa		4.92	□□□□□ -1.62
UBR3-208	ENST00000474426	BRPF1	P55201	1214 aa	Predicted RBP	4.92	□□□□□ -1.62
UBR3-208	ENST00000474426	WWC1	Q8IX03	1113 aa		4.92	□□□□□ -1.62
UBR3-208	ENST00000474426	FOXD4L5	Q5VV16	416 aa	Predicted RBP	4.91	□□□□□ -1.62
UBR3-208	ENST00000474426	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	4.91	□□□□□ -1.62
UBR3-208	ENST00000474426	ZNF526	Q8TF50	670 aa	Predicted RBP	4.91	□□□□□ -1.62
UBR3-208	ENST00000474426	MYT1L	Q9UL68	1186 aa		4.91	□□□□□ -1.62
UBR3-208	ENST00000474426	RAD21	O60216	631 aa		4.9	□□□□□ -1.62
UBR3-208	ENST00000474426	FTSJ3	Q8IY81	847 aa	Known RBP	4.9	□□□□□ -1.62
UBR3-208	ENST00000474426	PLCD4	Q9BRC7	762 aa		4.9	□□□□□ -1.62
UBR3-208	ENST00000474426	GTF2E1	P29083	439 aa	Predicted RBP	4.9	□□□□□ -1.63
UBR3-208	ENST00000474426	KCTD17	Q8N5Z5	321 aa		4.9	□□□□□ -1.63
UBR3-208	ENST00000474426	RBM25	P49756	843 aa	Known RBP	4.89	□□□□□ -1.63
UBR3-208	ENST00000474426	FOXD1	Q16676	465 aa		4.89	□□□□□ -1.63
UBR3-208	ENST00000474426	CCDC27	Q2M243	656 aa		4.89	□□□□□ -1.63
UBR3-208	ENST00000474426	BBX	Q8WY36	941 aa	Predicted RBP	4.88	□□□□□ -1.63
UBR3-208	ENST00000474426	ARID3C	A6NKF2	412 aa		4.87	□□□□□ -1.63
UBR3-208	ENST00000474426	PIAS4	Q8N2W9	510 aa	Predicted RBP	4.87	□□□□□ -1.63
UBR3-208	ENST00000474426	DNAJC5	Q9H3Z4	198 aa		4.87	□□□□□ -1.63
UBR3-208	ENST00000474426	KDM4A	O75164	1064 aa		4.86	□□□□□ -1.63
UBR3-208	ENST00000474426	MCC	P23508	829 aa		4.86	□□□□□ -1.63
UBR3-208	ENST00000474426	ARID4B	Q4LE39	1312 aa	Predicted RBP	4.85	□□□□□ -1.63
UBR3-208	ENST00000474426	MAFG	O15525	162 aa		4.85	□□□□□ -1.63
UBR3-208	ENST00000474426	PPM1G	O15355	546 aa	Predicted RBP	4.85	□□□□□ -1.63
UBR3-208	ENST00000474426	USP35	Q9P2H5	1018 aa		4.85	□□□□□ -1.63
UBR3-208	ENST00000474426	ANAPC15	P60006	121 aa		4.85	□□□□□ -1.63
UBR3-208	ENST00000474426	SET	Q01105	290 aa	Predicted RBP	4.85	□□□□□ -1.63
UBR3-208	ENST00000474426	STAC3	Q96MF2	364 aa		4.84	□□□□□ -1.63
UBR3-208	ENST00000474426	DNAJC2	Q99543	621 aa	Known RBP	4.84	□□□□□ -1.64
UBR3-208	ENST00000474426	CADPS	Q9ULU8	1353 aa		4.84	□□□□□ -1.64
UBR3-208	ENST00000474426	PKD2	Q13563	968 aa		4.82	□□□□□ -1.64
UBR3-208	ENST00000474426	SGSM3	Q96HU1	749 aa		4.82	□□□□□ -1.64
UBR3-208	ENST00000474426	OS9	Q13438	667 aa	Predicted RBP	4.81	□□□□□ -1.64
UBR3-208	ENST00000474426	GPATCH11	Q8N954	259 aa		4.81	□□□□□ -1.64
UBR3-208	ENST00000474426	PTMS	P20962	102 aa		4.81	□□□□□ -1.64
UBR3-208	ENST00000474426	FAM193A	P78312	1265 aa		4.81	□□□□□ -1.64
UBR3-208	ENST00000474426	TMTC2	Q8N394	836 aa		4.79	□□□□□ -1.64
UBR3-208	ENST00000474426	PTMA	P06454	111 aa	Known RBP	4.79	□□□□□ -1.64
UBR3-208	ENST00000474426	CCDC125	Q86Z20	511 aa		4.78	□□□□□ -1.64
UBR3-208	ENST00000474426	PRDM4	Q9UKN5	801 aa		4.78	□□□□□ -1.64
UBR3-208	ENST00000474426	LAS1L	Q9Y4W2	734 aa	Known RBP	4.78	□□□□□ -1.64
UBR3-208	ENST00000474426	LOC102724159	A0A0B4J2E5	919 aa		4.78	□□□□□ -1.64
UBR3-208	ENST00000474426	PLEKHD1	A6NEE1	506 aa		4.78	□□□□□ -1.64
UBR3-208	ENST00000474426	PWP2	Q15269	919 aa	Known RBP	4.78	□□□□□ -1.64
UBR3-208	ENST00000474426	IL27	Q8NEV9	243 aa		4.78	□□□□□ -1.64
UBR3-208	ENST00000474426	CANX	P27824	592 aa	Known RBP	4.78	□□□□□ -1.64
UBR3-208	ENST00000474426	FAM50A	Q14320	339 aa	Known RBP	4.78	□□□□□ -1.64
UBR3-208	ENST00000474426	MFAP1	P55081	439 aa	Known RBP	4.77	□□□□□ -1.65
UBR3-208	ENST00000474426	PATL2	C9JE40	543 aa	Known RBP	4.77	□□□□□ -1.65
UBR3-208	ENST00000474426	NEFM	P07197	916 aa		4.77	□□□□□ -1.65
UBR3-208	ENST00000474426	MMP14	P50281	582 aa		4.77	□□□□□ -1.65
UBR3-208	ENST00000474426	ZNF316	A6NFI3	1004 aa	Predicted RBP	4.76	□□□□□ -1.65
UBR3-208	ENST00000474426	SLC52A1	Q9NWF4	448 aa		4.76	□□□□□ -1.65
UBR3-208	ENST00000474426	APBB1	O00213	710 aa		4.76	□□□□□ -1.65
UBR3-208	ENST00000474426	BRD1	O95696	1058 aa		4.76	□□□□□ -1.65
UBR3-208	ENST00000474426	EXOC8	Q8IYI6	725 aa		4.76	□□□□□ -1.65
UBR3-208	ENST00000474426	CDCA8	Q53HL2	280 aa		4.75	□□□□□ -1.65

Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms