RNA–Protein interactions for RNA: ENST00000620514.1

HMGN3-203, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 3 BASIC

Gene HMGN3, Length 1,010 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-203ENST00000620514 C20orf203Q8NBC4 194 aa11.16□□□□□ -0.62
HMGN3-203ENST00000620514 IGLV4-60A0A075B6I1 120 aa11.15□□□□□ -0.62
HMGN3-203ENST00000620514 GATCO43716 136 aaKnown RBP11.15□□□□□ -0.62
HMGN3-203ENST00000620514 REG3AQ06141 175 aa11.15□□□□□ -0.62
HMGN3-203ENST00000620514 PGLYRP4Q96LB8 373 aa11.15□□□□□ -0.62
HMGN3-203ENST00000620514 GFRA4Q9GZZ7 299 aa11.15□□□□□ -0.62
HMGN3-203ENST00000620514 IGLV10-54A0A075B6I4 117 aa11.14□□□□□ -0.63
HMGN3-203ENST00000620514 PRSS1P07477 247 aa11.14□□□□□ -0.63
HMGN3-203ENST00000620514 A0A1B0GVG6 124 aa11.13□□□□□ -0.63
HMGN3-203ENST00000620514 AMTP48728 403 aa11.13□□□□□ -0.63
HMGN3-203ENST00000620514 COTL1Q14019 142 aa11.13□□□□□ -0.63
HMGN3-203ENST00000620514 FAM231DQ6ZW35 169 aa11.13□□□□□ -0.63
HMGN3-203ENST00000620514 RPL39LQ96EH5 51 aaKnown RBP11.13□□□□□ -0.63
HMGN3-203ENST00000620514 CHAC1Q9BUX1 264 aa11.13□□□□□ -0.63
HMGN3-203ENST00000620514 DMBT1Q9UGM3 2413 aaPredicted RBP11.12□□□□□ -0.63
HMGN3-203ENST00000620514 A0A1B0GUV1 79 aa11.12□□□□□ -0.63
HMGN3-203ENST00000620514 CIRBP-AS1Q8TBR5 109 aa11.12□□□□□ -0.63
HMGN3-203ENST00000620514 EIF5A2Q9GZV4 153 aaKnown RBP11.12□□□□□ -0.63
HMGN3-203ENST00000620514 PLA2G1BP04054 148 aaKnown RBP11.11□□□□□ -0.63
HMGN3-203ENST00000620514 A8MWL6 223 aa11.1□□□□□ -0.63
HMGN3-203ENST00000620514 UBE2L6O14933 153 aa11.1□□□□□ -0.63
HMGN3-203ENST00000620514 SMIM15Q7Z3B0 74 aa11.1□□□□□ -0.63
HMGN3-203ENST00000620514 FAM210AQ96ND0 272 aa11.1□□□□□ -0.63
HMGN3-203ENST00000620514 SMIM7Q9BQ49 75 aa11.1□□□□□ -0.63
HMGN3-203ENST00000620514 SRP19P09132 144 aaKnown RBP11.09□□□□□ -0.63
HMGN3-203ENST00000620514 LINC01551Q86U37 167 aa11.09□□□□□ -0.63
HMGN3-203ENST00000620514 TRAV8-4A0A0B4J246 113 aa11.08□□□□□ -0.64
HMGN3-203ENST00000620514 CT83Q5H943 113 aa11.08□□□□□ -0.64
HMGN3-203ENST00000620514 ZNF727A8MUV8 499 aa11.07□□□□□ -0.64
HMGN3-203ENST00000620514 GAS8-AS1O95177 125 aa11.07□□□□□ -0.64
HMGN3-203ENST00000620514 DGAT2L7PQ6IED9 249 aa11.07□□□□□ -0.64
HMGN3-203ENST00000620514 C9orf163Q8N9P6 203 aa11.07□□□□□ -0.64
HMGN3-203ENST00000620514 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.06□□□□□ -0.64
HMGN3-203ENST00000620514 IGKV2-29A2NJV5 120 aaPredicted RBP11.06□□□□□ -0.64
HMGN3-203ENST00000620514 SDHAF1A6NFY7 115 aa11.06□□□□□ -0.64
HMGN3-203ENST00000620514 NDUFS6O75380 124 aaKnown RBP11.06□□□□□ -0.64
HMGN3-203ENST00000620514 KRTAP10-4P60372 401 aaPredicted RBP11.06□□□□□ -0.64
HMGN3-203ENST00000620514 IGKV3OR2-268A0A0C4DH90 116 aa11.05□□□□□ -0.64
HMGN3-203ENST00000620514 hDV102S1A0JD36 115 aa11.05□□□□□ -0.64
HMGN3-203ENST00000620514 NCR2O95944 276 aa11.05□□□□□ -0.64
HMGN3-203ENST00000620514 TEX261Q6UWH6 196 aa11.05□□□□□ -0.64
HMGN3-203ENST00000620514 CLRN3Q8NCR9 226 aa11.05□□□□□ -0.64
HMGN3-203ENST00000620514 TSKUQ8WUA8 353 aa11.05□□□□□ -0.64
HMGN3-203ENST00000620514 BORCS7Q96B45 105 aa11.05□□□□□ -0.64
HMGN3-203ENST00000620514 OSTCQ9NRP0 149 aa11.05□□□□□ -0.64
HMGN3-203ENST00000620514 HIGD1CA8MV81 97 aa11.04□□□□□ -0.64
HMGN3-203ENST00000620514 PANO1I0J062 215 aa11.04□□□□□ -0.64
HMGN3-203ENST00000620514 APCSP02743 223 aa11.04□□□□□ -0.64
HMGN3-203ENST00000620514 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.04□□□□□ -0.64
HMGN3-203ENST00000620514 A0A1B0GUT8 65 aa11.03□□□□□ -0.64
HMGN3-203ENST00000620514 GAGE12HA6NDE8 117 aa11.03□□□□□ -0.64
HMGN3-203ENST00000620514 SLPIP03973 132 aa11.03□□□□□ -0.64
HMGN3-203ENST00000620514 AMMECR1LQ6DCA0 310 aa11.03□□□□□ -0.64
HMGN3-203ENST00000620514 RNASEKQ6P5S7 137 aaKnown RBP11.03□□□□□ -0.64
HMGN3-203ENST00000620514 SDIM1Q6ZPB5 146 aa11.03□□□□□ -0.64
HMGN3-203ENST00000620514 RNF185Q96GF1 192 aa11.03□□□□□ -0.64
HMGN3-203ENST00000620514 TRBV6-5A0A0K0K1A5 114 aa11.02□□□□□ -0.65
HMGN3-203ENST00000620514 FAM231BA6NCW3 169 aa11.02□□□□□ -0.65
HMGN3-203ENST00000620514 C9JQL5 133 aa11.02□□□□□ -0.65
HMGN3-203ENST00000620514 I3L3M4 83 aa11.02□□□□□ -0.65
HMGN3-203ENST00000620514 FGF6P10767 208 aa11.02□□□□□ -0.65
HMGN3-203ENST00000620514 PMCHP20382 165 aa11.02□□□□□ -0.65
HMGN3-203ENST00000620514 TMEM191AQ9H0A3 160 aa11.02□□□□□ -0.65
HMGN3-203ENST00000620514 V9GYV3 84 aa11.02□□□□□ -0.65
HMGN3-203ENST00000620514 RAB4AP20338 218 aa11.01□□□□□ -0.65
HMGN3-203ENST00000620514 RPS10P46783 165 aaKnown RBP11.01□□□□□ -0.65
HMGN3-203ENST00000620514 CNBPP62633 177 aaKnown RBP11.01□□□□□ -0.65
HMGN3-203ENST00000620514 ISOC2Q96AB3 205 aa11.01□□□□□ -0.65
HMGN3-203ENST00000620514 TMEM242Q9NWH2 141 aa11.01□□□□□ -0.65
HMGN3-203ENST00000620514 H7C423 109 aa11□□□□□ -0.65
HMGN3-203ENST00000620514 J3QL48 77 aa11□□□□□ -0.65
HMGN3-203ENST00000620514 TSHBP01222 138 aa11□□□□□ -0.65
HMGN3-203ENST00000620514 RPL23P62829 140 aaKnown RBP11□□□□□ -0.65
HMGN3-203ENST00000620514 TMEM241Q24JQ0 296 aa11□□□□□ -0.65
HMGN3-203ENST00000620514 AMN1Q8IY45 258 aa11□□□□□ -0.65
HMGN3-203ENST00000620514 C15orf56Q8N910 161 aa11□□□□□ -0.65
HMGN3-203ENST00000620514 ST20Q9HBF5 79 aa11□□□□□ -0.65
HMGN3-203ENST00000620514 SRSF3P84103 164 aaKnown RBP10.99□□□□□ -0.65
HMGN3-203ENST00000620514 NUP35Q8NFH5 326 aa10.99□□□□□ -0.65
HMGN3-203ENST00000620514 CHCHD10Q8WYQ3 142 aaPredicted RBP10.99□□□□□ -0.65
HMGN3-203ENST00000620514 AP5S1Q9NUS5 200 aa10.99□□□□□ -0.65
HMGN3-203ENST00000620514 SMKR1H3BMG3 65 aa10.98□□□□□ -0.65
HMGN3-203ENST00000620514 ESDP10768 282 aa10.98□□□□□ -0.65
HMGN3-203ENST00000620514 POLR2KP53803 58 aaKnown RBP10.98□□□□□ -0.65
HMGN3-203ENST00000620514 IGHV3-64A0A075B6Q5 118 aa10.97□□□□□ -0.65
HMGN3-203ENST00000620514 KRTAP29-1A8MX34 341 aaPredicted RBP10.97□□□□□ -0.65
HMGN3-203ENST00000620514 RPL37AP61513 92 aaKnown RBP10.97□□□□□ -0.65
HMGN3-203ENST00000620514 RIGQ13278 110 aa10.97□□□□□ -0.65
HMGN3-203ENST00000620514 ADIRFQ15847 76 aa10.97□□□□□ -0.65
HMGN3-203ENST00000620514 HIGD2BQ4VC39 106 aa10.97□□□□□ -0.65
HMGN3-203ENST00000620514 FAM74A3Q4VXF1 159 aa10.97□□□□□ -0.65
HMGN3-203ENST00000620514 MRAP2Q96G30 205 aa10.97□□□□□ -0.65
HMGN3-203ENST00000620514 LRP1Q07954 4544 aaKnown RBP10.96□□□□□ -0.65
HMGN3-203ENST00000620514 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.96□□□□□ -0.65
HMGN3-203ENST00000620514 CHTF8P0CG12 524 aa10.96□□□□□ -0.65
HMGN3-203ENST00000620514 ZNF25P17030 456 aaPredicted RBP10.96□□□□□ -0.65
HMGN3-203ENST00000620514 TRBV27A0A0K0K1C4 114 aa10.95□□□□□ -0.66
HMGN3-203ENST00000620514 FOXI1Q12951 378 aa10.95□□□□□ -0.66
HMGN3-203ENST00000620514 CIRBPQ14011 172 aaKnown RBP10.95□□□□□ -0.66
HMGN3-203ENST00000620514 CFAP161Q6P656 301 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 169 ms