RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 PDZD11Q5EBL8 140 aa10.21□□□□□ -0.77
VRK3-212ENST00000596814 ATP6V0E2Q8NHE4 81 aa10.21□□□□□ -0.78
VRK3-212ENST00000596814 A0A096LPF7 62 aa10.2□□□□□ -0.78
VRK3-212ENST00000596814 IGHV1-24A0A0C4DH33 117 aa10.2□□□□□ -0.78
VRK3-212ENST00000596814 PMCHL1Q16048 86 aa10.2□□□□□ -0.78
VRK3-212ENST00000596814 HIST3H2BBQ8N257 126 aa10.2□□□□□ -0.78
VRK3-212ENST00000596814 NUDT3O95989 172 aa10.19□□□□□ -0.78
VRK3-212ENST00000596814 AMTP48728 403 aa10.19□□□□□ -0.78
VRK3-212ENST00000596814 SH2D6Q7Z4S9 175 aa10.19□□□□□ -0.78
VRK3-212ENST00000596814 FAM19A2Q8N3H0 131 aa10.19□□□□□ -0.78
VRK3-212ENST00000596814 HBDP02042 147 aa10.19□□□□□ -0.78
VRK3-212ENST00000596814 S100A2P29034 98 aa10.19□□□□□ -0.78
VRK3-212ENST00000596814 TMEM97Q5BJF2 176 aa10.18□□□□□ -0.78
VRK3-212ENST00000596814 GTSF1LQ9H1H1 148 aa10.18□□□□□ -0.78
VRK3-212ENST00000596814 A0A096LNJ9 63 aa10.17□□□□□ -0.78
VRK3-212ENST00000596814 BTF3P20290 206 aaKnown RBP10.17□□□□□ -0.78
VRK3-212ENST00000596814 NTM-AS1Q6ZSK4 140 aa10.17□□□□□ -0.78
VRK3-212ENST00000596814 C15orf53Q8NAA6 179 aa10.17□□□□□ -0.78
VRK3-212ENST00000596814 TMEM18Q96B42 140 aa10.16□□□□□ -0.78
VRK3-212ENST00000596814 IGLL5B9A064 214 aa10.16□□□□□ -0.78
VRK3-212ENST00000596814 G0S2P27469 103 aa10.16□□□□□ -0.78
VRK3-212ENST00000596814 C2orf66Q6UXQ4 117 aa10.16□□□□□ -0.78
VRK3-212ENST00000596814 CHCHD7Q9BUK0 85 aa10.16□□□□□ -0.78
VRK3-212ENST00000596814 TRBV25-1A0A075B6N4 114 aa10.15□□□□□ -0.78
VRK3-212ENST00000596814 TRBV6-8A0A0A6YYG3 113 aa10.15□□□□□ -0.78
VRK3-212ENST00000596814 C20orf203Q8NBC4 194 aa10.15□□□□□ -0.78
VRK3-212ENST00000596814 HIST1H2BLQ99880 126 aa10.15□□□□□ -0.78
VRK3-212ENST00000596814 CYSLTR1Q9Y271 337 aa10.15□□□□□ -0.78
VRK3-212ENST00000596814 NUPR2A6NF83 97 aa10.14□□□□□ -0.79
VRK3-212ENST00000596814 IFITM10A6NMD0 228 aa10.14□□□□□ -0.79
VRK3-212ENST00000596814 FABP4P15090 132 aa10.14□□□□□ -0.79
VRK3-212ENST00000596814 CEMP1Q6PRD7 247 aaPredicted RBP10.14□□□□□ -0.79
VRK3-212ENST00000596814 TOMM6Q96B49 74 aa10.14□□□□□ -0.79
VRK3-212ENST00000596814 PACRGQ96M98 296 aaPredicted RBP10.14□□□□□ -0.79
VRK3-212ENST00000596814 TMEM243Q9BU79 118 aa10.14□□□□□ -0.79
VRK3-212ENST00000596814 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.13□□□□□ -0.79
VRK3-212ENST00000596814 IGKV2-29A2NJV5 120 aaPredicted RBP10.13□□□□□ -0.79
VRK3-212ENST00000596814 LEPROTL1O95214 131 aa10.13□□□□□ -0.79
VRK3-212ENST00000596814 RPL39P62891 51 aaKnown RBP10.13□□□□□ -0.79
VRK3-212ENST00000596814 LINC01549A6NIU2 74 aa10.13□□□□□ -0.79
VRK3-212ENST00000596814 TIRAPP58753 221 aa10.12□□□□□ -0.79
VRK3-212ENST00000596814 LYPD5Q6UWN5 251 aa10.12□□□□□ -0.79
VRK3-212ENST00000596814 HSPB8Q9UJY1 196 aa10.12□□□□□ -0.79
VRK3-212ENST00000596814 UBE2L6O14933 153 aa10.11□□□□□ -0.79
VRK3-212ENST00000596814 LELP1Q5T871 98 aa10.11□□□□□ -0.79
VRK3-212ENST00000596814 CHCHD5Q9BSY4 110 aa10.11□□□□□ -0.79
VRK3-212ENST00000596814 KLK5Q9Y337 293 aaPredicted RBP10.11□□□□□ -0.79
VRK3-212ENST00000596814 DNAH7Q8WXX0 4024 aa10.11□□□□□ -0.79
VRK3-212ENST00000596814 SCGB3A1Q96QR1 104 aa10.1□□□□□ -0.79
VRK3-212ENST00000596814 H7C423 109 aa10.1□□□□□ -0.79
VRK3-212ENST00000596814 LINC00173Q6ZV60 143 aa10.1□□□□□ -0.79
VRK3-212ENST00000596814 TGP01266 2768 aa10.09□□□□□ -0.79
VRK3-212ENST00000596814 ATP5LO75964 103 aa10.09□□□□□ -0.79
VRK3-212ENST00000596814 ESRGQ1W209 222 aa10.09□□□□□ -0.79
VRK3-212ENST00000596814 ERASQ7Z444 233 aa10.09□□□□□ -0.79
VRK3-212ENST00000596814 UBE2D4Q9Y2X8 147 aa10.09□□□□□ -0.79
VRK3-212ENST00000596814 FGF6P10767 208 aa10.08□□□□□ -0.8
VRK3-212ENST00000596814 SMAGPQ0VAQ4 97 aa10.08□□□□□ -0.8
VRK3-212ENST00000596814 GAGE6Q13070 117 aa10.08□□□□□ -0.8
VRK3-212ENST00000596814 IFI27L1Q96BM0 104 aa10.08□□□□□ -0.8
VRK3-212ENST00000596814 WWC2-AS2Q96NR7 200 aa10.08□□□□□ -0.8
VRK3-212ENST00000596814 TIMM17AQ99595 171 aa10.08□□□□□ -0.8
VRK3-212ENST00000596814 SPANXA1Q9NS26 97 aa10.08□□□□□ -0.8
VRK3-212ENST00000596814 IGIPA6NJ69 53 aa10.07□□□□□ -0.8
VRK3-212ENST00000596814 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.07□□□□□ -0.8
VRK3-212ENST00000596814 AMMECR1LQ6DCA0 310 aa10.07□□□□□ -0.8
VRK3-212ENST00000596814 OR10D4PQ8NGN7 298 aa10.07□□□□□ -0.8
VRK3-212ENST00000596814 MUC7Q8TAX7 377 aa10.07□□□□□ -0.8
VRK3-212ENST00000596814 TIMM21Q9BVV7 248 aa10.07□□□□□ -0.8
VRK3-212ENST00000596814 APLNQ9ULZ1 77 aa10.07□□□□□ -0.8
VRK3-212ENST00000596814 PYGO1Q9Y3Y4 419 aa10.07□□□□□ -0.8
VRK3-212ENST00000596814 DYNC2H1Q8NCM8 4307 aaKnown RBP10.07□□□□□ -0.8
VRK3-212ENST00000596814 TRAV8-6A0A0B4J262 113 aa10.07□□□□□ -0.8
VRK3-212ENST00000596814 ZFAND6Q6FIF0 208 aa10.07□□□□□ -0.8
VRK3-212ENST00000596814 MRPL52Q86TS9 123 aaKnown RBP10.07□□□□□ -0.8
VRK3-212ENST00000596814 TMEM141Q96I45 108 aa10.07□□□□□ -0.8
VRK3-212ENST00000596814 MAP1LC3CQ9BXW4 147 aa10.07□□□□□ -0.8
VRK3-212ENST00000596814 ZNF25P17030 456 aaPredicted RBP10.06□□□□□ -0.8
VRK3-212ENST00000596814 TCTAP57738 103 aa10.06□□□□□ -0.8
VRK3-212ENST00000596814 DGAT2L7PQ6IED9 249 aa10.06□□□□□ -0.8
VRK3-212ENST00000596814 Q6ZN92 141 aa10.06□□□□□ -0.8
VRK3-212ENST00000596814 IGLV4-3A0A075B6K6 122 aa10.05□□□□□ -0.8
VRK3-212ENST00000596814 LOC105371267A0A1B0GV96 52 aa10.05□□□□□ -0.8
VRK3-212ENST00000596814 TMEM262E9PQX1 116 aa10.05□□□□□ -0.8
VRK3-212ENST00000596814 CCL18P55774 89 aa10.05□□□□□ -0.8
VRK3-212ENST00000596814 KRTDAPP60985 99 aa10.05□□□□□ -0.8
VRK3-212ENST00000596814 PKIAP61925 76 aa10.05□□□□□ -0.8
VRK3-212ENST00000596814 TMEM101Q96IK0 257 aa10.05□□□□□ -0.8
VRK3-212ENST00000596814 CSDC2Q9Y534 153 aaKnown RBP10.05□□□□□ -0.8
VRK3-212ENST00000596814 CSMD3Q7Z407 3707 aa10.05□□□□□ -0.8
VRK3-212ENST00000596814 NPSP0C0P6 89 aa10.04□□□□□ -0.8
VRK3-212ENST00000596814 C3orf79P0CE67 100 aa10.04□□□□□ -0.8
VRK3-212ENST00000596814 Q6ZUT4 128 aa10.04□□□□□ -0.8
VRK3-212ENST00000596814 OR5A1Q8NGJ0 315 aa10.04□□□□□ -0.8
VRK3-212ENST00000596814 H0Y8G0 127 aa10.04□□□□□ -0.8
VRK3-212ENST00000596814 AKR1D1P51857 326 aa10.04□□□□□ -0.8
VRK3-212ENST00000596814 MPV17L2Q567V2 206 aa10.04□□□□□ -0.8
VRK3-212ENST00000596814 PAPPA-AS1Q5QFB9 102 aa10.04□□□□□ -0.8
VRK3-212ENST00000596814 BAALCQ8WXS3 180 aa10.04□□□□□ -0.8
VRK3-212ENST00000596814 OPRPNQ99935 248 aaPredicted RBP10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms