RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 FAM231BA6NCW3 169 aa15.74■□□□□ 0.11
SHMT1-206ENST00000579558 RPL23P62829 140 aaKnown RBP15.74■□□□□ 0.11
SHMT1-206ENST00000579558 MIAQ16674 131 aa15.74■□□□□ 0.11
SHMT1-206ENST00000579558 CLPSL2Q6UWE3 100 aa15.74■□□□□ 0.11
SHMT1-206ENST00000579558 NAT8Q9UHE5 227 aa15.74■□□□□ 0.11
SHMT1-206ENST00000579558 V9GYV3 84 aa15.74■□□□□ 0.11
SHMT1-206ENST00000579558 AMTP48728 403 aa15.73■□□□□ 0.11
SHMT1-206ENST00000579558 ADIRFQ15847 76 aa15.73■□□□□ 0.11
SHMT1-206ENST00000579558 LINC00269Q8N2A0 174 aa15.73■□□□□ 0.11
SHMT1-206ENST00000579558 SMDT1Q9H4I9 107 aa15.73■□□□□ 0.11
SHMT1-206ENST00000579558 PRR34Q9NV39 138 aa15.73■□□□□ 0.11
SHMT1-206ENST00000579558 TMEM70Q9BUB7 260 aa15.72■□□□□ 0.11
SHMT1-206ENST00000579558 UBE2L6O14933 153 aa15.71■□□□□ 0.11
SHMT1-206ENST00000579558 TMEM191AQ9H0A3 160 aa15.7■□□□□ 0.1
SHMT1-206ENST00000579558 A0A1B0GUV1 79 aa15.69■□□□□ 0.1
SHMT1-206ENST00000579558 HLA-DQA1P01909 254 aa15.69■□□□□ 0.1
SHMT1-206ENST00000579558 C20orf203Q8NBC4 194 aa15.69■□□□□ 0.1
SHMT1-206ENST00000579558 IGLV4-60A0A075B6I1 120 aa15.68■□□□□ 0.1
SHMT1-206ENST00000579558 HAMPP81172 84 aa15.68■□□□□ 0.1
SHMT1-206ENST00000579558 REG3AQ06141 175 aa15.68■□□□□ 0.1
SHMT1-206ENST00000579558 RIGQ13278 110 aa15.68■□□□□ 0.1
SHMT1-206ENST00000579558 NUP35Q8NFH5 326 aa15.68■□□□□ 0.1
SHMT1-206ENST00000579558 SDHAF1A6NFY7 115 aa15.67■□□□□ 0.1
SHMT1-206ENST00000579558 C14orf177Q52M58 125 aa15.67■□□□□ 0.1
SHMT1-206ENST00000579558 NAT8BQ9UHF3 227 aa15.67■□□□□ 0.1
SHMT1-206ENST00000579558 NCR2O95944 276 aa15.66■□□□□ 0.1
SHMT1-206ENST00000579558 TRBV6-5A0A0K0K1A5 114 aa15.65■□□□□ 0.1
SHMT1-206ENST00000579558 EPM2AB3EWF7 344 aa15.65■□□□□ 0.1
SHMT1-206ENST00000579558 GAS8-AS1O95177 125 aa15.65■□□□□ 0.1
SHMT1-206ENST00000579558 APCSP02743 223 aa15.65■□□□□ 0.1
SHMT1-206ENST00000579558 AMN1Q8IY45 258 aa15.65■□□□□ 0.1
SHMT1-206ENST00000579558 RNF185Q96GF1 192 aa15.65■□□□□ 0.1
SHMT1-206ENST00000579558 FAM30AQ9NZY2 134 aa15.65■□□□□ 0.1
SHMT1-206ENST00000579558 USP17L23D6RBM5 183 aa15.64■□□□□ 0.09
SHMT1-206ENST00000579558 RAB4AP20338 218 aa15.64■□□□□ 0.09
SHMT1-206ENST00000579558 MRAP2Q96G30 205 aa15.64■□□□□ 0.09
SHMT1-206ENST00000579558 ST20Q9HBF5 79 aa15.64■□□□□ 0.09
SHMT1-206ENST00000579558 IGLV10-54A0A075B6I4 117 aa15.63■□□□□ 0.09
SHMT1-206ENST00000579558 PMCHP20382 165 aa15.63■□□□□ 0.09
SHMT1-206ENST00000579558 LINC01620Q4KN68 170 aa15.63■□□□□ 0.09
SHMT1-206ENST00000579558 KRTAP26-1Q6PEX3 210 aa15.63■□□□□ 0.09
SHMT1-206ENST00000579558 SMIM27A0A1W2PRY6 76 aa15.62■□□□□ 0.09
SHMT1-206ENST00000579558 I3L3M4 83 aa15.62■□□□□ 0.09
SHMT1-206ENST00000579558 IGKV2D-29A0A075B6S2 120 aaPredicted RBP15.61■□□□□ 0.09
SHMT1-206ENST00000579558 TRAV8-4A0A0B4J246 113 aa15.61■□□□□ 0.09
SHMT1-206ENST00000579558 IGKV2-29A2NJV5 120 aaPredicted RBP15.61■□□□□ 0.09
SHMT1-206ENST00000579558 SMR3BP02814 79 aaPredicted RBP15.61■□□□□ 0.09
SHMT1-206ENST00000579558 RAB14P61106 215 aa15.61■□□□□ 0.09
SHMT1-206ENST00000579558 AMMECR1LQ6DCA0 310 aa15.61■□□□□ 0.09
SHMT1-206ENST00000579558 RPS10P46783 165 aaKnown RBP15.6■□□□□ 0.09
SHMT1-206ENST00000579558 H7C423 109 aa15.59■□□□□ 0.09
SHMT1-206ENST00000579558 Q5VSD8 79 aa15.59■□□□□ 0.09
SHMT1-206ENST00000579558 RNASEKQ6P5S7 137 aaKnown RBP15.59■□□□□ 0.09
SHMT1-206ENST00000579558 Q6ZSA8 131 aa15.59■□□□□ 0.09
SHMT1-206ENST00000579558 SMKR1H3BMG3 65 aa15.58■□□□□ 0.08
SHMT1-206ENST00000579558 TMEM242Q9NWH2 141 aa15.58■□□□□ 0.08
SHMT1-206ENST00000579558 DNAH8Q96JB1 4490 aa15.58■□□□□ 0.08
SHMT1-206ENST00000579558 TSHBP01222 138 aa15.57■□□□□ 0.08
SHMT1-206ENST00000579558 CAMPP49913 170 aa15.57■□□□□ 0.08
SHMT1-206ENST00000579558 IGKV3OR2-268A0A0C4DH90 116 aa15.56■□□□□ 0.08
SHMT1-206ENST00000579558 PRSS1P07477 247 aa15.56■□□□□ 0.08
SHMT1-206ENST00000579558 FGF6P10767 208 aa15.56■□□□□ 0.08
SHMT1-206ENST00000579558 POLR2KP53803 58 aaKnown RBP15.56■□□□□ 0.08
SHMT1-206ENST00000579558 A0A1B0GW15 77 aa15.55■□□□□ 0.08
SHMT1-206ENST00000579558 FAT1Q14517 4588 aa15.55■□□□□ 0.08
SHMT1-206ENST00000579558 TRBV27A0A0K0K1C4 114 aa15.54■□□□□ 0.08
SHMT1-206ENST00000579558 PPP1R17O96001 155 aa15.54■□□□□ 0.08
SHMT1-206ENST00000579558 FAM104BQ5XKR9 115 aa15.54■□□□□ 0.08
SHMT1-206ENST00000579558 FAM229AH3BQW9 127 aa15.53■□□□□ 0.08
SHMT1-206ENST00000579558 ESDP10768 282 aa15.53■□□□□ 0.08
SHMT1-206ENST00000579558 ZNF25P17030 456 aaPredicted RBP15.53■□□□□ 0.08
SHMT1-206ENST00000579558 MRPL51Q4U2R6 128 aaKnown RBP15.53■□□□□ 0.08
SHMT1-206ENST00000579558 NRACQ8N912 160 aa15.53■□□□□ 0.08
SHMT1-206ENST00000579558 BTF3L4Q96K17 158 aa15.53■□□□□ 0.08
SHMT1-206ENST00000579558 MRPL54Q6P161 138 aaKnown RBP15.52■□□□□ 0.08
SHMT1-206ENST00000579558 CLRN3Q8NCR9 226 aa15.52■□□□□ 0.08
SHMT1-206ENST00000579558 TMEM101Q96IK0 257 aa15.52■□□□□ 0.08
SHMT1-206ENST00000579558 VCYO14598 125 aa15.51■□□□□ 0.07
SHMT1-206ENST00000579558 S100A8P05109 93 aa15.51■□□□□ 0.07
SHMT1-206ENST00000579558 SUMO2P61956 95 aaKnown RBP15.51■□□□□ 0.07
SHMT1-206ENST00000579558 HBBP68871 147 aa15.51■□□□□ 0.07
SHMT1-206ENST00000579558 DGAT2L7PQ6IED9 249 aa15.51■□□□□ 0.07
SHMT1-206ENST00000579558 GAGE12HA6NDE8 117 aa15.5■□□□□ 0.07
SHMT1-206ENST00000579558 FCER1GP30273 86 aa15.5■□□□□ 0.07
SHMT1-206ENST00000579558 C7orf77A4D0Y5 90 aa15.49■□□□□ 0.07
SHMT1-206ENST00000579558 PPP1R2P9O14990 202 aa15.49■□□□□ 0.07
SHMT1-206ENST00000579558 CLLU1Q5K131 121 aa15.49■□□□□ 0.07
SHMT1-206ENST00000579558 OR5A1Q8NGJ0 315 aa15.49■□□□□ 0.07
SHMT1-206ENST00000579558 A0A1B0GXF2 115 aa15.48■□□□□ 0.07
SHMT1-206ENST00000579558 hDV102S1A0JD36 115 aa15.48■□□□□ 0.07
SHMT1-206ENST00000579558 LINC00862A6NCI5 91 aa15.48■□□□□ 0.07
SHMT1-206ENST00000579558 F8W036 122 aa15.48■□□□□ 0.07
SHMT1-206ENST00000579558 CKS2P33552 79 aa15.48■□□□□ 0.07
SHMT1-206ENST00000579558 PNRC1Q12796 327 aaPredicted RBP15.48■□□□□ 0.07
SHMT1-206ENST00000579558 SCXQ7RTU7 201 aa15.48■□□□□ 0.07
SHMT1-206ENST00000579558 CHCHD10Q8WYQ3 142 aaPredicted RBP15.48■□□□□ 0.07
SHMT1-206ENST00000579558 INAFM2P0DMQ5 153 aa15.47■□□□□ 0.07
SHMT1-206ENST00000579558 KIR2DL4Q99706 377 aa15.47■□□□□ 0.07
SHMT1-206ENST00000579558 CHAC1Q9BUX1 264 aa15.47■□□□□ 0.07
SHMT1-206ENST00000579558 MRPL52Q86TS9 123 aaKnown RBP15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 111.1 ms