RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 HAMPP81172 84 aa13.28□□□□□ -0.28
CLK3-225ENST00000569063 C14orf177Q52M58 125 aa13.28□□□□□ -0.28
CLK3-225ENST00000569063 Q5VSD8 79 aa13.28□□□□□ -0.28
CLK3-225ENST00000569063 C20orf203Q8NBC4 194 aa13.28□□□□□ -0.28
CLK3-225ENST00000569063 HIGD1CA8MV81 97 aa13.27□□□□□ -0.29
CLK3-225ENST00000569063 SMR3BP02814 79 aaPredicted RBP13.27□□□□□ -0.29
CLK3-225ENST00000569063 REG3AQ06141 175 aa13.27□□□□□ -0.29
CLK3-225ENST00000569063 TMEM241Q24JQ0 296 aa13.27□□□□□ -0.29
CLK3-225ENST00000569063 KRTAP26-1Q6PEX3 210 aa13.27□□□□□ -0.29
CLK3-225ENST00000569063 CLPSL2Q6UWE3 100 aa13.27□□□□□ -0.29
CLK3-225ENST00000569063 DEFB104AQ8WTQ1 72 aa13.27□□□□□ -0.29
CLK3-225ENST00000569063 RPL39LQ96EH5 51 aaKnown RBP13.27□□□□□ -0.29
CLK3-225ENST00000569063 A0A1B0GUT8 65 aa13.26□□□□□ -0.29
CLK3-225ENST00000569063 C9JQL5 133 aa13.26□□□□□ -0.29
CLK3-225ENST00000569063 AMTP48728 403 aa13.26□□□□□ -0.29
CLK3-225ENST00000569063 IGLV4-60A0A075B6I1 120 aa13.25□□□□□ -0.29
CLK3-225ENST00000569063 UBE2L6O14933 153 aa13.25□□□□□ -0.29
CLK3-225ENST00000569063 NCR2O95944 276 aa13.25□□□□□ -0.29
CLK3-225ENST00000569063 HLA-DQA1P01909 254 aa13.25□□□□□ -0.29
CLK3-225ENST00000569063 ISOC2Q96AB3 205 aa13.25□□□□□ -0.29
CLK3-225ENST00000569063 SMDT1Q9H4I9 107 aa13.25□□□□□ -0.29
CLK3-225ENST00000569063 V9GYV3 84 aa13.25□□□□□ -0.29
CLK3-225ENST00000569063 TRAV8-4A0A0B4J246 113 aa13.24□□□□□ -0.29
CLK3-225ENST00000569063 USP17L23D6RBM5 183 aa13.24□□□□□ -0.29
CLK3-225ENST00000569063 RPL23P62829 140 aaKnown RBP13.24□□□□□ -0.29
CLK3-225ENST00000569063 PEA15Q15121 130 aa13.24□□□□□ -0.29
CLK3-225ENST00000569063 LINC01620Q4KN68 170 aa13.24□□□□□ -0.29
CLK3-225ENST00000569063 TMEM191AQ9H0A3 160 aa13.24□□□□□ -0.29
CLK3-225ENST00000569063 TRBV6-5A0A0K0K1A5 114 aa13.23□□□□□ -0.29
CLK3-225ENST00000569063 SRSF3P84103 164 aaKnown RBP13.23□□□□□ -0.29
CLK3-225ENST00000569063 NAT8Q9UHE5 227 aa13.23□□□□□ -0.29
CLK3-225ENST00000569063 FAT1Q14517 4588 aa13.22□□□□□ -0.29
CLK3-225ENST00000569063 SDHAF1A6NFY7 115 aa13.22□□□□□ -0.29
CLK3-225ENST00000569063 FAM229AH3BQW9 127 aa13.22□□□□□ -0.29
CLK3-225ENST00000569063 NUP35Q8NFH5 326 aa13.21□□□□□ -0.29
CLK3-225ENST00000569063 RNF185Q96GF1 192 aa13.21□□□□□ -0.29
CLK3-225ENST00000569063 DNAH8Q96JB1 4490 aa13.21□□□□□ -0.3
CLK3-225ENST00000569063 IGLV10-54A0A075B6I4 117 aa13.2□□□□□ -0.3
CLK3-225ENST00000569063 H7C423 109 aa13.2□□□□□ -0.3
CLK3-225ENST00000569063 GAS8-AS1O95177 125 aa13.2□□□□□ -0.3
CLK3-225ENST00000569063 PRSS1P07477 247 aa13.2□□□□□ -0.3
CLK3-225ENST00000569063 RAB4AP20338 218 aa13.2□□□□□ -0.3
CLK3-225ENST00000569063 I3L3M4 83 aa13.19□□□□□ -0.3
CLK3-225ENST00000569063 APCSP02743 223 aa13.19□□□□□ -0.3
CLK3-225ENST00000569063 INAFM2P0DMQ5 153 aa13.19□□□□□ -0.3
CLK3-225ENST00000569063 RIGQ13278 110 aa13.19□□□□□ -0.3
CLK3-225ENST00000569063 ADIRFQ15847 76 aa13.19□□□□□ -0.3
CLK3-225ENST00000569063 DGAT2L7PQ6IED9 249 aa13.19□□□□□ -0.3
CLK3-225ENST00000569063 MRAP2Q96G30 205 aa13.19□□□□□ -0.3
CLK3-225ENST00000569063 ST20Q9HBF5 79 aa13.19□□□□□ -0.3
CLK3-225ENST00000569063 NAT8BQ9UHF3 227 aa13.19□□□□□ -0.3
CLK3-225ENST00000569063 PMCHP20382 165 aa13.18□□□□□ -0.3
CLK3-225ENST00000569063 CLRN3Q8NCR9 226 aa13.18□□□□□ -0.3
CLK3-225ENST00000569063 AMN1Q8IY45 258 aa13.17□□□□□ -0.3
CLK3-225ENST00000569063 SMIM27A0A1W2PRY6 76 aa13.16□□□□□ -0.3
CLK3-225ENST00000569063 RPS10P46783 165 aaKnown RBP13.16□□□□□ -0.3
CLK3-225ENST00000569063 AMMECR1LQ6DCA0 310 aa13.16□□□□□ -0.3
CLK3-225ENST00000569063 CHAC1Q9BUX1 264 aa13.16□□□□□ -0.3
CLK3-225ENST00000569063 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.15□□□□□ -0.3
CLK3-225ENST00000569063 IGKV2-29A2NJV5 120 aaPredicted RBP13.15□□□□□ -0.3
CLK3-225ENST00000569063 POLR2KP53803 58 aaKnown RBP13.15□□□□□ -0.3
CLK3-225ENST00000569063 SCXQ7RTU7 201 aa13.15□□□□□ -0.3
CLK3-225ENST00000569063 TRBV27A0A0K0K1C4 114 aa13.14□□□□□ -0.31
CLK3-225ENST00000569063 TSHBP01222 138 aa13.14□□□□□ -0.31
CLK3-225ENST00000569063 FGF6P10767 208 aa13.14□□□□□ -0.31
CLK3-225ENST00000569063 ESDP10768 282 aa13.14□□□□□ -0.31
CLK3-225ENST00000569063 C9orf163Q8N9P6 203 aa13.14□□□□□ -0.31
CLK3-225ENST00000569063 VPS13BQ7Z7G8 4022 aa13.13□□□□□ -0.31
CLK3-225ENST00000569063 ZNF25P17030 456 aaPredicted RBP13.13□□□□□ -0.31
CLK3-225ENST00000569063 RNASEKQ6P5S7 137 aaKnown RBP13.13□□□□□ -0.31
CLK3-225ENST00000569063 PPP1R17O96001 155 aa13.12□□□□□ -0.31
CLK3-225ENST00000569063 TMEM242Q9NWH2 141 aa13.12□□□□□ -0.31
CLK3-225ENST00000569063 A0A1B0GW15 77 aa13.11□□□□□ -0.31
CLK3-225ENST00000569063 CNBPP62633 177 aaKnown RBP13.11□□□□□ -0.31
CLK3-225ENST00000569063 LINC00528Q8N1L1 170 aa13.11□□□□□ -0.31
CLK3-225ENST00000569063 CIRBP-AS1Q8TBR5 109 aa13.11□□□□□ -0.31
CLK3-225ENST00000569063 IGKV3OR2-268A0A0C4DH90 116 aa13.1□□□□□ -0.31
CLK3-225ENST00000569063 hDV102S1A0JD36 115 aa13.1□□□□□ -0.31
CLK3-225ENST00000569063 SMKR1H3BMG3 65 aa13.1□□□□□ -0.31
CLK3-225ENST00000569063 VCYO14598 125 aa13.1□□□□□ -0.31
CLK3-225ENST00000569063 PLA2G1BP04054 148 aaKnown RBP13.1□□□□□ -0.31
CLK3-225ENST00000569063 FAM104BQ5XKR9 115 aa13.1□□□□□ -0.31
CLK3-225ENST00000569063 NRACQ8N912 160 aa13.1□□□□□ -0.31
CLK3-225ENST00000569063 SRRM2Q9UQ35 2752 aaKnown RBP13.09□□□□□ -0.31
CLK3-225ENST00000569063 GAGE12HA6NDE8 117 aa13.09□□□□□ -0.31
CLK3-225ENST00000569063 OR5A1Q8NGJ0 315 aa13.09□□□□□ -0.31
CLK3-225ENST00000569063 TMEM101Q96IK0 257 aa13.09□□□□□ -0.31
CLK3-225ENST00000569063 BTF3L4Q96K17 158 aa13.09□□□□□ -0.31
CLK3-225ENST00000569063 CAMPP49913 170 aa13.08□□□□□ -0.32
CLK3-225ENST00000569063 SUMO2P61956 95 aaKnown RBP13.08□□□□□ -0.32
CLK3-225ENST00000569063 MRPL51Q4U2R6 128 aaKnown RBP13.08□□□□□ -0.32
CLK3-225ENST00000569063 MRPL52Q86TS9 123 aaKnown RBP13.08□□□□□ -0.32
CLK3-225ENST00000569063 CHCHD10Q8WYQ3 142 aaPredicted RBP13.08□□□□□ -0.32
CLK3-225ENST00000569063 LINC00862A6NCI5 91 aa13.07□□□□□ -0.32
CLK3-225ENST00000569063 CFAP161Q6P656 301 aa13.07□□□□□ -0.32
CLK3-225ENST00000569063 SDIM1Q6ZPB5 146 aa13.07□□□□□ -0.32
CLK3-225ENST00000569063 C7orf77A4D0Y5 90 aa13.06□□□□□ -0.32
CLK3-225ENST00000569063 PPP1R2P9O14990 202 aa13.06□□□□□ -0.32
CLK3-225ENST00000569063 SLPIP03973 132 aa13.06□□□□□ -0.32
CLK3-225ENST00000569063 C15orf56Q8N910 161 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 136.6 ms