RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 RPS10P5Q9NQ39 176 aa11.68□□□□□ -0.54
CLN3-217ENST00000565354 DNAH5Q8TE73 4624 aa11.68□□□□□ -0.54
CLN3-217ENST00000565354 C7orf77A4D0Y5 90 aa11.67□□□□□ -0.54
CLN3-217ENST00000565354 SDHAF1A6NFY7 115 aa11.67□□□□□ -0.54
CLN3-217ENST00000565354 SMKR1H3BMG3 65 aa11.67□□□□□ -0.54
CLN3-217ENST00000565354 PPP1R17O96001 155 aa11.67□□□□□ -0.54
CLN3-217ENST00000565354 BTF3P20290 206 aaKnown RBP11.67□□□□□ -0.54
CLN3-217ENST00000565354 MRPL51Q4U2R6 128 aaKnown RBP11.67□□□□□ -0.54
CLN3-217ENST00000565354 NIT1Q86X76 327 aa11.67□□□□□ -0.54
CLN3-217ENST00000565354 PMCHP20382 165 aa11.66□□□□□ -0.54
CLN3-217ENST00000565354 CKS2P33552 79 aa11.66□□□□□ -0.54
CLN3-217ENST00000565354 NTM-AS1Q6ZSK4 140 aa11.66□□□□□ -0.54
CLN3-217ENST00000565354 NFE4Q86UQ8 179 aa11.66□□□□□ -0.54
CLN3-217ENST00000565354 DEFB104AQ8WTQ1 72 aa11.66□□□□□ -0.54
CLN3-217ENST00000565354 TRBV6-5A0A0K0K1A5 114 aa11.65□□□□□ -0.54
CLN3-217ENST00000565354 UBE2L6O14933 153 aa11.65□□□□□ -0.54
CLN3-217ENST00000565354 GAS8-AS1O95177 125 aa11.65□□□□□ -0.54
CLN3-217ENST00000565354 AMTP48728 403 aa11.65□□□□□ -0.54
CLN3-217ENST00000565354 ELOBQ15370 118 aa11.65□□□□□ -0.54
CLN3-217ENST00000565354 SVBPQ8N300 66 aa11.65□□□□□ -0.54
CLN3-217ENST00000565354 TMEM243Q9BU79 118 aa11.65□□□□□ -0.54
CLN3-217ENST00000565354 CHCHD7Q9BUK0 85 aa11.65□□□□□ -0.54
CLN3-217ENST00000565354 I3L3M4 83 aa11.64□□□□□ -0.55
CLN3-217ENST00000565354 SNAPINO95295 136 aa11.64□□□□□ -0.55
CLN3-217ENST00000565354 RPS10P46783 165 aaKnown RBP11.64□□□□□ -0.55
CLN3-217ENST00000565354 GAGE6Q13070 117 aa11.64□□□□□ -0.55
CLN3-217ENST00000565354 IQCJQ1A5X6 159 aa11.64□□□□□ -0.55
CLN3-217ENST00000565354 Q8N3U1 123 aa11.64□□□□□ -0.55
CLN3-217ENST00000565354 Q9HAA7 133 aa11.64□□□□□ -0.55
CLN3-217ENST00000565354 TMEM242Q9NWH2 141 aa11.64□□□□□ -0.55
CLN3-217ENST00000565354 TRAV9-1A0A075B6T8 112 aa11.63□□□□□ -0.55
CLN3-217ENST00000565354 IBA57-AS1B1ANH7 110 aa11.63□□□□□ -0.55
CLN3-217ENST00000565354 APCSP02743 223 aa11.63□□□□□ -0.55
CLN3-217ENST00000565354 D6R8Y8 96 aa11.62□□□□□ -0.55
CLN3-217ENST00000565354 TMEM70Q9BUB7 260 aa11.62□□□□□ -0.55
CLN3-217ENST00000565354 PPBPP02775 128 aa11.61□□□□□ -0.55
CLN3-217ENST00000565354 SUMO2P61956 95 aaKnown RBP11.61□□□□□ -0.55
CLN3-217ENST00000565354 LAGE3Q14657 143 aa11.61□□□□□ -0.55
CLN3-217ENST00000565354 KLK12Q9UKR0 248 aa11.61□□□□□ -0.55
CLN3-217ENST00000565354 TRAV8-3A0A0A6YYJ7 113 aa11.6□□□□□ -0.55
CLN3-217ENST00000565354 VCYO14598 125 aa11.6□□□□□ -0.55
CLN3-217ENST00000565354 PSCAO43653 123 aa11.6□□□□□ -0.55
CLN3-217ENST00000565354 CRPP02741 224 aa11.6□□□□□ -0.55
CLN3-217ENST00000565354 ANGP03950 147 aaKnown RBP11.6□□□□□ -0.55
CLN3-217ENST00000565354 MPV17L2Q567V2 206 aa11.6□□□□□ -0.55
CLN3-217ENST00000565354 ATRAIDQ6UW56 229 aa11.6□□□□□ -0.55
CLN3-217ENST00000565354 SLC7A5P1Q8MH63 180 aa11.6□□□□□ -0.55
CLN3-217ENST00000565354 ORMDL3Q8N138 153 aa11.6□□□□□ -0.55
CLN3-217ENST00000565354 NRACQ8N912 160 aa11.6□□□□□ -0.55
CLN3-217ENST00000565354 TNFRSF6BO95407 300 aa11.59□□□□□ -0.55
CLN3-217ENST00000565354 FCER1GP30273 86 aa11.59□□□□□ -0.55
CLN3-217ENST00000565354 POLR2KP53803 58 aaKnown RBP11.59□□□□□ -0.55
CLN3-217ENST00000565354 TMEM136Q6ZRR5 245 aa11.59□□□□□ -0.55
CLN3-217ENST00000565354 SPATA12Q7Z6I5 190 aa11.59□□□□□ -0.55
CLN3-217ENST00000565354 UBE2WQ96B02 151 aa11.59□□□□□ -0.55
CLN3-217ENST00000565354 KIR2DL4Q99706 377 aa11.59□□□□□ -0.55
CLN3-217ENST00000565354 RBX1P62877 108 aa11.58□□□□□ -0.56
CLN3-217ENST00000565354 AMMECR1LQ6DCA0 310 aa11.58□□□□□ -0.56
CLN3-217ENST00000565354 Q8N976 141 aa11.58□□□□□ -0.56
CLN3-217ENST00000565354 RMI2Q96E14 147 aa11.58□□□□□ -0.56
CLN3-217ENST00000565354 PRELID3AQ96N28 172 aa11.58□□□□□ -0.56
CLN3-217ENST00000565354 C20orf78Q9BR46 151 aa11.58□□□□□ -0.56
CLN3-217ENST00000565354 TM2D2Q9BX73 214 aa11.58□□□□□ -0.56
CLN3-217ENST00000565354 TRBV27A0A0K0K1C4 114 aa11.57□□□□□ -0.56
CLN3-217ENST00000565354 TRBV24-1A0A075B6N3 115 aa11.56□□□□□ -0.56
CLN3-217ENST00000565354 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.56□□□□□ -0.56
CLN3-217ENST00000565354 IGKV2-29A2NJV5 120 aaPredicted RBP11.56□□□□□ -0.56
CLN3-217ENST00000565354 PHOX2AO14813 284 aa11.56□□□□□ -0.56
CLN3-217ENST00000565354 TSHBP01222 138 aa11.56□□□□□ -0.56
CLN3-217ENST00000565354 NPYP01303 97 aa11.56□□□□□ -0.56
CLN3-217ENST00000565354 HLA-DQA1P01909 254 aa11.56□□□□□ -0.56
CLN3-217ENST00000565354 Q0VG73 95 aa11.56□□□□□ -0.56
CLN3-217ENST00000565354 COX19Q49B96 90 aa11.56□□□□□ -0.56
CLN3-217ENST00000565354 Q6ZRN7 208 aaPredicted RBP11.56□□□□□ -0.56
CLN3-217ENST00000565354 EREGO14944 169 aa11.55□□□□□ -0.56
CLN3-217ENST00000565354 RNASEKQ6P5S7 137 aaKnown RBP11.55□□□□□ -0.56
CLN3-217ENST00000565354 LAMTOR2Q9Y2Q5 125 aa11.55□□□□□ -0.56
CLN3-217ENST00000565354 IGKV2D-24A0A075B6R9 120 aa11.54□□□□□ -0.56
CLN3-217ENST00000565354 H7C423 109 aa11.54□□□□□ -0.56
CLN3-217ENST00000565354 TCAPO15273 167 aa11.54□□□□□ -0.56
CLN3-217ENST00000565354 CLPSL2Q6UWE3 100 aa11.54□□□□□ -0.56
CLN3-217ENST00000565354 SMIM2Q9BVW6 85 aa11.54□□□□□ -0.56
CLN3-217ENST00000565354 MAP1LC3AQ9H492 121 aa11.54□□□□□ -0.56
CLN3-217ENST00000565354 COX11Q9Y6N1 276 aa11.54□□□□□ -0.56
CLN3-217ENST00000565354 A0A1B0GUV1 79 aa11.53□□□□□ -0.56
CLN3-217ENST00000565354 EPM2AB3EWF7 344 aa11.53□□□□□ -0.56
CLN3-217ENST00000565354 RPL32P62910 135 aaKnown RBP11.53□□□□□ -0.56
CLN3-217ENST00000565354 LINC00269Q8N2A0 174 aa11.53□□□□□ -0.56
CLN3-217ENST00000565354 TMEM101Q96IK0 257 aa11.53□□□□□ -0.56
CLN3-217ENST00000565354 GNB1LQ9BYB4 327 aa11.53□□□□□ -0.56
CLN3-217ENST00000565354 KRTAP10-2P60368 255 aa11.52□□□□□ -0.57
CLN3-217ENST00000565354 SMAGPQ0VAQ4 97 aa11.52□□□□□ -0.57
CLN3-217ENST00000565354 TMEM18Q96B42 140 aa11.52□□□□□ -0.57
CLN3-217ENST00000565354 C1orf43Q9BWL3 253 aa11.52□□□□□ -0.57
CLN3-217ENST00000565354 IGLV4-60A0A075B6I1 120 aa11.51□□□□□ -0.57
CLN3-217ENST00000565354 LOC389332A0A1B0GUA5 103 aa11.51□□□□□ -0.57
CLN3-217ENST00000565354 MT-ND6P03923 174 aa11.51□□□□□ -0.57
CLN3-217ENST00000565354 FGF6P10767 208 aa11.51□□□□□ -0.57
CLN3-217ENST00000565354 ESDP10768 282 aa11.51□□□□□ -0.57
CLN3-217ENST00000565354 RAB5AP20339 215 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms