RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 COTL1Q14019 142 aa6.62□□□□□ -1.35
CUX1-216ENST00000558469 IQCJQ1A5X6 159 aa6.62□□□□□ -1.35
CUX1-216ENST00000558469 NTM-AS1Q6ZSK4 140 aa6.62□□□□□ -1.35
CUX1-216ENST00000558469 PRSS3P2Q8NHM4 247 aa6.62□□□□□ -1.35
CUX1-216ENST00000558469 C18orf32Q8TCD1 76 aa6.62□□□□□ -1.35
CUX1-216ENST00000558469 KIR2DL4Q99706 377 aa6.62□□□□□ -1.35
CUX1-216ENST00000558469 IGLV2-18A0A075B6J9 118 aa6.61□□□□□ -1.35
CUX1-216ENST00000558469 TRBV6-8A0A0A6YYG3 113 aa6.61□□□□□ -1.35
CUX1-216ENST00000558469 TCAPO15273 167 aa6.61□□□□□ -1.35
CUX1-216ENST00000558469 FCER1GP30273 86 aa6.61□□□□□ -1.35
CUX1-216ENST00000558469 TIRAPP58753 221 aa6.61□□□□□ -1.35
CUX1-216ENST00000558469 TMEM97Q5BJF2 176 aa6.61□□□□□ -1.35
CUX1-216ENST00000558469 LELP1Q5T871 98 aa6.61□□□□□ -1.35
CUX1-216ENST00000558469 UBE2DNLQ8IWF7 75 aa6.61□□□□□ -1.35
CUX1-216ENST00000558469 Q8N8P6 123 aa6.61□□□□□ -1.35
CUX1-216ENST00000558469 LYSTQ99698 3801 aa6.61□□□□□ -1.35
CUX1-216ENST00000558469 NXT2Q9NPJ8 142 aaKnown RBP6.61□□□□□ -1.35
CUX1-216ENST00000558469 LINC00588Q9Y4M8 146 aa6.61□□□□□ -1.35
CUX1-216ENST00000558469 TRBV25-1A0A075B6N4 114 aa6.6□□□□□ -1.35
CUX1-216ENST00000558469 IGHV1-24A0A0C4DH33 117 aa6.6□□□□□ -1.35
CUX1-216ENST00000558469 C1orf196B1AJZ1 125 aa6.6□□□□□ -1.35
CUX1-216ENST00000558469 AMTP48728 403 aa6.6□□□□□ -1.35
CUX1-216ENST00000558469 TRAV8-6A0A0B4J262 113 aa6.59□□□□□ -1.35
CUX1-216ENST00000558469 HIST1H2BKO60814 126 aa6.59□□□□□ -1.35
CUX1-216ENST00000558469 HIST1H2BJP06899 126 aa6.59□□□□□ -1.35
CUX1-216ENST00000558469 HIST1H2BOP23527 126 aa6.59□□□□□ -1.35
CUX1-216ENST00000558469 HIST1H2BBP33778 126 aa6.59□□□□□ -1.35
CUX1-216ENST00000558469 HIST1H2BDP58876 126 aa6.59□□□□□ -1.35
CUX1-216ENST00000558469 HIST1H2BCP62807 126 aa6.59□□□□□ -1.35
CUX1-216ENST00000558469 HIST2H2BEQ16778 126 aa6.59□□□□□ -1.35
CUX1-216ENST00000558469 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.59□□□□□ -1.35
CUX1-216ENST00000558469 FA2HQ7L5A8 372 aa6.59□□□□□ -1.35
CUX1-216ENST00000558469 NIT1Q86X76 327 aa6.59□□□□□ -1.35
CUX1-216ENST00000558469 BAGE3Q86Y29 109 aa6.59□□□□□ -1.35
CUX1-216ENST00000558469 HIST1H2BHQ93079 126 aa6.59□□□□□ -1.35
CUX1-216ENST00000558469 HIST1H2BNQ99877 126 aa6.59□□□□□ -1.35
CUX1-216ENST00000558469 HIST1H2BMQ99879 126 aa6.59□□□□□ -1.35
CUX1-216ENST00000558469 CHCHD5Q9BSY4 110 aa6.59□□□□□ -1.35
CUX1-216ENST00000558469 TMEM243Q9BU79 118 aa6.59□□□□□ -1.35
CUX1-216ENST00000558469 MRPS16Q9Y3D3 137 aaKnown RBP6.59□□□□□ -1.35
CUX1-216ENST00000558469 UBE2L6O14933 153 aa6.58□□□□□ -1.36
CUX1-216ENST00000558469 LINC00614P0C842 121 aa6.58□□□□□ -1.36
CUX1-216ENST00000558469 RAB5BP61020 215 aa6.58□□□□□ -1.36
CUX1-216ENST00000558469 Q0VG73 95 aa6.58□□□□□ -1.36
CUX1-216ENST00000558469 LAGE3Q14657 143 aa6.58□□□□□ -1.36
CUX1-216ENST00000558469 RNASEKQ6P5S7 137 aaKnown RBP6.58□□□□□ -1.36
CUX1-216ENST00000558469 WFDC10BQ8IUB3 73 aa6.58□□□□□ -1.36
CUX1-216ENST00000558469 CHCHD7Q9BUK0 85 aa6.58□□□□□ -1.36
CUX1-216ENST00000558469 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.57□□□□□ -1.36
CUX1-216ENST00000558469 IGKV2-29A2NJV5 120 aaPredicted RBP6.57□□□□□ -1.36
CUX1-216ENST00000558469 LINC01546A6NGU7 62 aa6.57□□□□□ -1.36
CUX1-216ENST00000558469 TMEM262E9PQX1 116 aa6.57□□□□□ -1.36
CUX1-216ENST00000558469 K7EMI3 77 aa6.57□□□□□ -1.36
CUX1-216ENST00000558469 LY6G6CO95867 125 aa6.57□□□□□ -1.36
CUX1-216ENST00000558469 ESDP10768 282 aa6.57□□□□□ -1.36
CUX1-216ENST00000558469 GAGE6Q13070 117 aa6.57□□□□□ -1.36
CUX1-216ENST00000558469 ORMDL2Q53FV1 153 aa6.57□□□□□ -1.36
CUX1-216ENST00000558469 LGALS9CQ6DKI2 356 aa6.57□□□□□ -1.36
CUX1-216ENST00000558469 URB1-AS1Q96HZ7 61 aa6.57□□□□□ -1.36
CUX1-216ENST00000558469 UPK3BQ9BT76 320 aa6.57□□□□□ -1.36
CUX1-216ENST00000558469 SIVA1O15304 175 aa6.56□□□□□ -1.36
CUX1-216ENST00000558469 RPL39P62891 51 aaKnown RBP6.56□□□□□ -1.36
CUX1-216ENST00000558469 Q9H8V8 135 aa6.56□□□□□ -1.36
CUX1-216ENST00000558469 AP5S1Q9NUS5 200 aa6.56□□□□□ -1.36
CUX1-216ENST00000558469 PLECQ15149 4684 aaKnown RBP6.56□□□□□ -1.36
CUX1-216ENST00000558469 A0A087WX48 190 aa6.55□□□□□ -1.36
CUX1-216ENST00000558469 H7C423 109 aa6.55□□□□□ -1.36
CUX1-216ENST00000558469 SERF1AO75920 110 aa6.55□□□□□ -1.36
CUX1-216ENST00000558469 IGHV3-30P01768 117 aa6.55□□□□□ -1.36
CUX1-216ENST00000558469 IGHV3-33P01772 117 aa6.55□□□□□ -1.36
CUX1-216ENST00000558469 IGHV3-30-3P0DP02 117 aa6.55□□□□□ -1.36
CUX1-216ENST00000558469 IGHV3-30-5P0DP03 117 aa6.55□□□□□ -1.36
CUX1-216ENST00000558469 BTF3P20290 206 aaKnown RBP6.55□□□□□ -1.36
CUX1-216ENST00000558469 NDUFA6P56556 154 aa6.55□□□□□ -1.36
CUX1-216ENST00000558469 PMCHL1Q16048 86 aa6.55□□□□□ -1.36
CUX1-216ENST00000558469 MPV17L2Q567V2 206 aa6.55□□□□□ -1.36
CUX1-216ENST00000558469 AMMECR1LQ6DCA0 310 aa6.55□□□□□ -1.36
CUX1-216ENST00000558469 C20orf203Q8NBC4 194 aa6.55□□□□□ -1.36
CUX1-216ENST00000558469 LINC00476Q8WZB0 136 aa6.55□□□□□ -1.36
CUX1-216ENST00000558469 TMEM18Q96B42 140 aa6.55□□□□□ -1.36
CUX1-216ENST00000558469 CHCHD1Q96BP2 118 aaKnown RBP6.55□□□□□ -1.36
CUX1-216ENST00000558469 FGF6P10767 208 aa6.54□□□□□ -1.36
CUX1-216ENST00000558469 G0S2P27469 103 aa6.54□□□□□ -1.36
CUX1-216ENST00000558469 PKIAP61925 76 aa6.54□□□□□ -1.36
CUX1-216ENST00000558469 C2orf66Q6UXQ4 117 aa6.54□□□□□ -1.36
CUX1-216ENST00000558469 NUPR1O60356 82 aa6.53□□□□□ -1.36
CUX1-216ENST00000558469 HSBP1O75506 76 aa6.53□□□□□ -1.36
CUX1-216ENST00000558469 DNAH10OSP0CZ25 163 aa6.53□□□□□ -1.36
CUX1-216ENST00000558469 LINC00310P59036 64 aa6.53□□□□□ -1.36
CUX1-216ENST00000558469 RBX1P62877 108 aa6.53□□□□□ -1.36
CUX1-216ENST00000558469 LINC01556Q5JQF7 62 aa6.53□□□□□ -1.36
CUX1-216ENST00000558469 Q8N976 141 aa6.53□□□□□ -1.36
CUX1-216ENST00000558469 TOMM6Q96B49 74 aa6.53□□□□□ -1.36
CUX1-216ENST00000558469 TMEM101Q96IK0 257 aa6.53□□□□□ -1.36
CUX1-216ENST00000558469 CYSLTR1Q9Y271 337 aa6.53□□□□□ -1.36
CUX1-216ENST00000558469 UBE2D4Q9Y2X8 147 aa6.53□□□□□ -1.36
CUX1-216ENST00000558469 IGLV4-60A0A075B6I1 120 aa6.52□□□□□ -1.37
CUX1-216ENST00000558469 A0A096LNJ9 63 aa6.52□□□□□ -1.37
CUX1-216ENST00000558469 A0A1B0GUV1 79 aa6.52□□□□□ -1.37
CUX1-216ENST00000558469 HBDP02042 147 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 222.6 ms