RNA–Protein interactions for RNA: ENST00000550075.5

CPSF6-205, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 4

Gene CPSF6, Length 540 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-205ENST00000550075 HBBP68871 147 aa17.32■□□□□ 0.36
CPSF6-205ENST00000550075 CDPF1Q6NVV7 123 aa17.32■□□□□ 0.36
CPSF6-205ENST00000550075 PGPEP1Q9NXJ5 209 aa17.32■□□□□ 0.36
CPSF6-205ENST00000550075 IGKV2D-24A0A075B6R9 120 aa17.31■□□□□ 0.36
CPSF6-205ENST00000550075 MRPL54Q6P161 138 aaKnown RBP17.31■□□□□ 0.36
CPSF6-205ENST00000550075 Q8N976 141 aa17.31■□□□□ 0.36
CPSF6-205ENST00000550075 F8W036 122 aa17.3■□□□□ 0.36
CPSF6-205ENST00000550075 APCSP02743 223 aa17.3■□□□□ 0.36
CPSF6-205ENST00000550075 I3L3M4 83 aa17.29■□□□□ 0.36
CPSF6-205ENST00000550075 PMCHP20382 165 aa17.29■□□□□ 0.36
CPSF6-205ENST00000550075 FAM104BQ5XKR9 115 aa17.29■□□□□ 0.36
CPSF6-205ENST00000550075 ATP5L2Q7Z4Y8 100 aa17.29■□□□□ 0.36
CPSF6-205ENST00000550075 COMMD7Q86VX2 200 aa17.29■□□□□ 0.36
CPSF6-205ENST00000550075 C1orf43Q9BWL3 253 aa17.29■□□□□ 0.36
CPSF6-205ENST00000550075 TMEM218A2RU14 115 aa17.28■□□□□ 0.36
CPSF6-205ENST00000550075 LRCOL1A6NCL2 159 aa17.28■□□□□ 0.36
CPSF6-205ENST00000550075 MIAQ16674 131 aa17.27■□□□□ 0.36
CPSF6-205ENST00000550075 DEFB104AQ8WTQ1 72 aa17.27■□□□□ 0.36
CPSF6-205ENST00000550075 TMEM70Q9BUB7 260 aa17.27■□□□□ 0.36
CPSF6-205ENST00000550075 A0A1B0GUV1 79 aa17.26■□□□□ 0.35
CPSF6-205ENST00000550075 A0A1B0GXF2 115 aa17.26■□□□□ 0.35
CPSF6-205ENST00000550075 GAS8-AS1O95177 125 aa17.25■□□□□ 0.35
CPSF6-205ENST00000550075 RPS10P46783 165 aaKnown RBP17.25■□□□□ 0.35
CPSF6-205ENST00000550075 MRPL51Q4U2R6 128 aaKnown RBP17.25■□□□□ 0.35
CPSF6-205ENST00000550075 ENHOQ6UWT2 76 aa17.25■□□□□ 0.35
CPSF6-205ENST00000550075 NTN5Q8WTR8 489 aaPredicted RBP17.25■□□□□ 0.35
CPSF6-205ENST00000550075 LINC00862A6NCI5 91 aa17.24■□□□□ 0.35
CPSF6-205ENST00000550075 SMKR1H3BMG3 65 aa17.24■□□□□ 0.35
CPSF6-205ENST00000550075 ADCYAP1P18509 176 aa17.24■□□□□ 0.35
CPSF6-205ENST00000550075 LINC00269Q8N2A0 174 aa17.24■□□□□ 0.35
CPSF6-205ENST00000550075 PRR34Q9NV39 138 aa17.24■□□□□ 0.35
CPSF6-205ENST00000550075 TRBV27A0A0K0K1C4 114 aa17.23■□□□□ 0.35
CPSF6-205ENST00000550075 H7C423 109 aa17.23■□□□□ 0.35
CPSF6-205ENST00000550075 CKS2P33552 79 aa17.23■□□□□ 0.35
CPSF6-205ENST00000550075 AMMECR1LQ6DCA0 310 aa17.23■□□□□ 0.35
CPSF6-205ENST00000550075 Q8N814 137 aa17.23■□□□□ 0.35
CPSF6-205ENST00000550075 SEC11CQ9BY50 192 aa17.23■□□□□ 0.35
CPSF6-205ENST00000550075 POLR2KP53803 58 aaKnown RBP17.22■□□□□ 0.35
CPSF6-205ENST00000550075 CLPSL2Q6UWE3 100 aa17.22■□□□□ 0.35
CPSF6-205ENST00000550075 SUMO2P61956 95 aaKnown RBP17.21■□□□□ 0.35
CPSF6-205ENST00000550075 NRACQ8N912 160 aa17.21■□□□□ 0.35
CPSF6-205ENST00000550075 TMEM242Q9NWH2 141 aa17.21■□□□□ 0.35
CPSF6-205ENST00000550075 VCYO14598 125 aa17.2■□□□□ 0.34
CPSF6-205ENST00000550075 REG3AQ06141 175 aa17.2■□□□□ 0.34
CPSF6-205ENST00000550075 C20orf203Q8NBC4 194 aa17.2■□□□□ 0.34
CPSF6-205ENST00000550075 IGLV5-52A0A0A0MRZ9 124 aa17.19■□□□□ 0.34
CPSF6-205ENST00000550075 TSHBP01222 138 aa17.19■□□□□ 0.34
CPSF6-205ENST00000550075 PPBPP02775 128 aa17.19■□□□□ 0.34
CPSF6-205ENST00000550075 BTF3L4Q96K17 158 aa17.19■□□□□ 0.34
CPSF6-205ENST00000550075 CTDSP1Q9GZU7 261 aa17.19■□□□□ 0.34
CPSF6-205ENST00000550075 IGLV4-60A0A075B6I1 120 aa17.18■□□□□ 0.34
CPSF6-205ENST00000550075 IGKV2D-29A0A075B6S2 120 aaPredicted RBP17.18■□□□□ 0.34
CPSF6-205ENST00000550075 IGKV2-29A2NJV5 120 aaPredicted RBP17.18■□□□□ 0.34
CPSF6-205ENST00000550075 LECT2O14960 151 aa17.18■□□□□ 0.34
CPSF6-205ENST00000550075 FCER1GP30273 86 aa17.18■□□□□ 0.34
CPSF6-205ENST00000550075 RNASEKQ6P5S7 137 aaKnown RBP17.18■□□□□ 0.34
CPSF6-205ENST00000550075 MAPKAPK5-AS1Q8N8E1 139 aa17.18■□□□□ 0.34
CPSF6-205ENST00000550075 BAALCQ8WXS3 180 aa17.18■□□□□ 0.34
CPSF6-205ENST00000550075 KIR2DL4Q99706 377 aa17.18■□□□□ 0.34
CPSF6-205ENST00000550075 C20orf78Q9BR46 151 aa17.18■□□□□ 0.34
CPSF6-205ENST00000550075 ZNF25P17030 456 aaPredicted RBP17.17■□□□□ 0.34
CPSF6-205ENST00000550075 IMMP2LQ96T52 175 aa17.17■□□□□ 0.34
CPSF6-205ENST00000550075 TRAV8-4A0A0B4J246 113 aa17.16■□□□□ 0.34
CPSF6-205ENST00000550075 D6R8Y8 96 aa17.16■□□□□ 0.34
CPSF6-205ENST00000550075 CDK2AP2O75956 126 aa17.16■□□□□ 0.34
CPSF6-205ENST00000550075 FGF6P10767 208 aa17.16■□□□□ 0.34
CPSF6-205ENST00000550075 FUSP35637 526 aaKnown RBP eCLIP17.16■□□□□ 0.343e-8■■■■□ 26.2
CPSF6-205ENST00000550075 WFDC2Q14508 124 aa17.16■□□□□ 0.34
CPSF6-205ENST00000550075 TRBV24-1A0A075B6N3 115 aa17.15■□□□□ 0.34
CPSF6-205ENST00000550075 C7orf77A4D0Y5 90 aa17.15■□□□□ 0.34
CPSF6-205ENST00000550075 HLA-DQA1P01909 254 aa17.15■□□□□ 0.34
CPSF6-205ENST00000550075 ESDP10768 282 aa17.15■□□□□ 0.34
CPSF6-205ENST00000550075 C14orf177Q52M58 125 aa17.15■□□□□ 0.34
CPSF6-205ENST00000550075 TMEM101Q96IK0 257 aa17.15■□□□□ 0.34
CPSF6-205ENST00000550075 LRP1BQ9NZR2 4599 aa17.14■□□□□ 0.34
CPSF6-205ENST00000550075 KIAA1109Q2LD37 5005 aa17.14■□□□□ 0.34
CPSF6-205ENST00000550075 DNAH5Q8TE73 4624 aa17.14■□□□□ 0.33
CPSF6-205ENST00000550075 PHOX2AO14813 284 aa17.14■□□□□ 0.33
CPSF6-205ENST00000550075 TCAPO15273 167 aa17.14■□□□□ 0.33
CPSF6-205ENST00000550075 TNFRSF6BO95407 300 aa17.14■□□□□ 0.33
CPSF6-205ENST00000550075 RPL32P62910 135 aaKnown RBP17.14■□□□□ 0.33
CPSF6-205ENST00000550075 ORMDL3Q8N138 153 aa17.14■□□□□ 0.33
CPSF6-205ENST00000550075 GCSHP23434 173 aa17.13■□□□□ 0.33
CPSF6-205ENST00000550075 SMAGPQ0VAQ4 97 aa17.13■□□□□ 0.33
CPSF6-205ENST00000550075 IGLV10-54A0A075B6I4 117 aa17.11■□□□□ 0.33
CPSF6-205ENST00000550075 TRAV9-1A0A075B6T8 112 aa17.11■□□□□ 0.33
CPSF6-205ENST00000550075 SMIM2Q9BVW6 85 aa17.11■□□□□ 0.33
CPSF6-205ENST00000550075 CARHSP1Q9Y2V2 147 aaKnown RBP17.11■□□□□ 0.33
CPSF6-205ENST00000550075 S100PP25815 95 aa17.1■□□□□ 0.33
CPSF6-205ENST00000550075 TMEM136Q6ZRR5 245 aa17.1■□□□□ 0.33
CPSF6-205ENST00000550075 OR5A1Q8NGJ0 315 aa17.1■□□□□ 0.33
CPSF6-205ENST00000550075 HERC2O95714 4834 aa17.1■□□□□ 0.33
CPSF6-205ENST00000550075 IGLV2-33A0A075B6J2 118 aaPredicted RBP17.09■□□□□ 0.33
CPSF6-205ENST00000550075 NPYP01303 97 aa17.09■□□□□ 0.33
CPSF6-205ENST00000550075 C10orf91Q5T1B1 145 aa17.09■□□□□ 0.33
CPSF6-205ENST00000550075 MRPL52Q86TS9 123 aaKnown RBP17.09■□□□□ 0.33
CPSF6-205ENST00000550075 PRELID3AQ96N28 172 aa17.09■□□□□ 0.33
CPSF6-205ENST00000550075 LAMTOR2Q9Y2Q5 125 aa17.09■□□□□ 0.33
CPSF6-205ENST00000550075 RHEBQ15382 184 aa17.08■□□□□ 0.32
CPSF6-205ENST00000550075 TMEM18Q96B42 140 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms