RNA–Protein interactions for RNA: ENST00000538570.5

COL4A6-208, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,528 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-208ENST00000538570 SCXQ7RTU7 201 aa7.56□□□□□ -1.2
COL4A6-208ENST00000538570 NOTCH4Q99466 2003 aa7.56□□□□□ -1.2
COL4A6-208ENST00000538570 PRR4Q16378 134 aa7.56□□□□□ -1.2
COL4A6-208ENST00000538570 UFSP1Q6NVU6 142 aa7.56□□□□□ -1.2
COL4A6-208ENST00000538570 Q8N7P7 452 aa7.56□□□□□ -1.2
COL4A6-208ENST00000538570 RNF138Q8WVD3 245 aa7.56□□□□□ -1.2
COL4A6-208ENST00000538570 A0A0J9YXY3 114 aa7.55□□□□□ -1.2
COL4A6-208ENST00000538570 NOTCH3Q9UM47 2321 aa7.55□□□□□ -1.2
COL4A6-208ENST00000538570 PSPHP1O15172 72 aa7.55□□□□□ -1.2
COL4A6-208ENST00000538570 IGLV1-47P01700 117 aa7.55□□□□□ -1.2
COL4A6-208ENST00000538570 IGLV2-14P01704 120 aa7.55□□□□□ -1.2
COL4A6-208ENST00000538570 CASC2Q6XLA1 102 aa7.55□□□□□ -1.2
COL4A6-208ENST00000538570 WT1P19544 449 aaPredicted RBP7.55□□□□□ -1.2
COL4A6-208ENST00000538570 CEMP1Q6PRD7 247 aaPredicted RBP7.55□□□□□ -1.2
COL4A6-208ENST00000538570 E7EUB6 86 aa7.55□□□□□ -1.2
COL4A6-208ENST00000538570 SMAD5-AS1Q9Y6J3 95 aa7.55□□□□□ -1.2
COL4A6-208ENST00000538570 MUC6Q6W4X9 2439 aa7.55□□□□□ -1.2
COL4A6-208ENST00000538570 PCNX2A6NKB5 2137 aa7.54□□□□□ -1.2
COL4A6-208ENST00000538570 ZFP36P26651 326 aaKnown RBP7.54□□□□□ -1.2
COL4A6-208ENST00000538570 C14orf177Q52M58 125 aa7.54□□□□□ -1.2
COL4A6-208ENST00000538570 ZFAND2AQ8N6M9 145 aa7.54□□□□□ -1.2
COL4A6-208ENST00000538570 UNQ9165/PRO28630Q6UXU0 137 aa7.54□□□□□ -1.2
COL4A6-208ENST00000538570 ANAPC1Q9H1A4 1944 aa7.54□□□□□ -1.2
COL4A6-208ENST00000538570 A0A1B0GXF2 115 aa7.54□□□□□ -1.2
COL4A6-208ENST00000538570 MAP6D1Q9H9H5 199 aa7.54□□□□□ -1.2
COL4A6-208ENST00000538570 GDF5OSQ5U4N7 250 aa7.53□□□□□ -1.2
COL4A6-208ENST00000538570 ADORA2A-AS1P86434 159 aa7.53□□□□□ -1.2
COL4A6-208ENST00000538570 CFAP126Q5VTH2 177 aa7.53□□□□□ -1.2
COL4A6-208ENST00000538570 YPEL4Q96NS1 127 aa7.53□□□□□ -1.2
COL4A6-208ENST00000538570 MED13LQ71F56 2210 aa7.53□□□□□ -1.2
COL4A6-208ENST00000538570 P0DMU3 169 aa7.52□□□□□ -1.2
COL4A6-208ENST00000538570 FAM231AP0DMU4 169 aa7.52□□□□□ -1.2
COL4A6-208ENST00000538570 FAM231CP0DMU5 169 aa7.52□□□□□ -1.2
COL4A6-208ENST00000538570 DYSFO75923 2080 aa7.52□□□□□ -1.2
COL4A6-208ENST00000538570 DAZAP2Q15038 168 aaPredicted RBP7.52□□□□□ -1.21
COL4A6-208ENST00000538570 IGF2-ASQ6U949 168 aa7.52□□□□□ -1.21
COL4A6-208ENST00000538570 MIFP14174 115 aa7.52□□□□□ -1.21
COL4A6-208ENST00000538570 REG3AQ06141 175 aa7.52□□□□□ -1.21
COL4A6-208ENST00000538570 HIGD2AQ9BW72 106 aa7.52□□□□□ -1.21
COL4A6-208ENST00000538570 IGKV2-24A0A0C4DH68 120 aa7.52□□□□□ -1.21
COL4A6-208ENST00000538570 A6NDX4 124 aa7.52□□□□□ -1.21
COL4A6-208ENST00000538570 TRIAP1O43715 76 aa7.52□□□□□ -1.21
COL4A6-208ENST00000538570 LINC00269Q8N2A0 174 aa7.52□□□□□ -1.21
COL4A6-208ENST00000538570 TP53TG3Q9ULZ0 132 aa7.52□□□□□ -1.21
COL4A6-208ENST00000538570 FAM208BQ5VWN6 2430 aa7.51□□□□□ -1.21
COL4A6-208ENST00000538570 MAPKAPK5-AS1Q8N8E1 139 aa7.51□□□□□ -1.21
COL4A6-208ENST00000538570 ODF3Q96PU9 254 aa7.51□□□□□ -1.21
COL4A6-208ENST00000538570 ZNF80P51504 273 aaPredicted RBP7.51□□□□□ -1.21
COL4A6-208ENST00000538570 IGKV1D-37A0A075B6S9 117 aa7.5□□□□□ -1.21
COL4A6-208ENST00000538570 H7C423 109 aa7.5□□□□□ -1.21
COL4A6-208ENST00000538570 SPRY4Q9C004 299 aa7.5□□□□□ -1.21
COL4A6-208ENST00000538570 C11orf1Q9H5F2 150 aa7.5□□□□□ -1.21
COL4A6-208ENST00000538570 TRBV30A0A0K0K1B3 111 aa7.5□□□□□ -1.21
COL4A6-208ENST00000538570 Q8N976 141 aa7.5□□□□□ -1.21
COL4A6-208ENST00000538570 KIR2DL5BQ8NHK3 375 aa7.5□□□□□ -1.21
COL4A6-208ENST00000538570 FAM19A3Q7Z5A8 133 aa7.5□□□□□ -1.21
COL4A6-208ENST00000538570 NEXN-AS1Q8NBZ9 246 aa7.5□□□□□ -1.21
COL4A6-208ENST00000538570 C11orf45Q8TAV5 145 aa7.5□□□□□ -1.21
COL4A6-208ENST00000538570 C2orf91Q6ZV80 131 aa7.49□□□□□ -1.21
COL4A6-208ENST00000538570 MALRD1Q5VYJ5 2156 aa7.49□□□□□ -1.21
COL4A6-208ENST00000538570 FAM19A1Q7Z5A9 133 aa7.49□□□□□ -1.21
COL4A6-208ENST00000538570 CHCHD10Q8WYQ3 142 aaPredicted RBP7.49□□□□□ -1.21
COL4A6-208ENST00000538570 CCDC140Q96MF4 163 aa7.49□□□□□ -1.21
COL4A6-208ENST00000538570 LINC00467Q9BRT7 94 aa7.49□□□□□ -1.21
COL4A6-208ENST00000538570 GTF3C1Q12789 2109 aa7.49□□□□□ -1.21
COL4A6-208ENST00000538570 FRMPD3Q5JV73 1810 aa7.49□□□□□ -1.21
COL4A6-208ENST00000538570 TMEM223A0PJW6 202 aa7.49□□□□□ -1.21
COL4A6-208ENST00000538570 Q6ZTI0 123 aa7.49□□□□□ -1.21
COL4A6-208ENST00000538570 IL17DQ8TAD2 202 aa7.49□□□□□ -1.21
COL4A6-208ENST00000538570 IGLV2-8P01709 118 aa7.49□□□□□ -1.21
COL4A6-208ENST00000538570 SLPIP03973 132 aa7.48□□□□□ -1.21
COL4A6-208ENST00000538570 ZFAND3Q9H8U3 227 aa7.48□□□□□ -1.21
COL4A6-208ENST00000538570 ARHGAP21Q5T5U3 1957 aa7.48□□□□□ -1.21
COL4A6-208ENST00000538570 EBI3Q14213 229 aa7.48□□□□□ -1.21
COL4A6-208ENST00000538570 LINC00322Q6ZN03 302 aaPredicted RBP7.48□□□□□ -1.21
COL4A6-208ENST00000538570 ACACBO00763 2458 aa7.48□□□□□ -1.21
COL4A6-208ENST00000538570 DNAJC9-AS1A6NH13 148 aa7.47□□□□□ -1.21
COL4A6-208ENST00000538570 A8MZ25 164 aa7.47□□□□□ -1.21
COL4A6-208ENST00000538570 A0A0J9YWU9 116 aa7.47□□□□□ -1.21
COL4A6-208ENST00000538570 IBA57-AS1B1ANH7 110 aa7.47□□□□□ -1.21
COL4A6-208ENST00000538570 CDKN2A-AS1Q9UH64 79 aa7.47□□□□□ -1.21
COL4A6-208ENST00000538570 OBSL1O75147 1896 aa7.47□□□□□ -1.21
COL4A6-208ENST00000538570 A0A096LNI7 61 aa7.47□□□□□ -1.21
COL4A6-208ENST00000538570 F8WDY8 70 aa7.47□□□□□ -1.21
COL4A6-208ENST00000538570 CRYGDP07320 174 aa7.47□□□□□ -1.21
COL4A6-208ENST00000538570 SHANK1Q9Y566 2161 aa7.46□□□□□ -1.21
COL4A6-208ENST00000538570 NUP210Q8TEM1 1887 aaPredicted RBP7.46□□□□□ -1.21
COL4A6-208ENST00000538570 LINC00308Q8TCZ7 52 aa7.46□□□□□ -1.21
COL4A6-208ENST00000538570 ZNF22P17026 224 aaPredicted RBP7.46□□□□□ -1.21
COL4A6-208ENST00000538570 PLA2G5P39877 138 aa7.46□□□□□ -1.21
COL4A6-208ENST00000538570 TRBV7-6A0A0J9YX20 115 aa7.46□□□□□ -1.22
COL4A6-208ENST00000538570 WFDC10BQ8IUB3 73 aa7.46□□□□□ -1.22
COL4A6-208ENST00000538570 ZGRF1Q86YA3 2104 aa7.46□□□□□ -1.22
COL4A6-208ENST00000538570 IGLV4-3A0A075B6K6 122 aa7.46□□□□□ -1.22
COL4A6-208ENST00000538570 TRAV7A0A075B6U4 112 aa7.46□□□□□ -1.22
COL4A6-208ENST00000538570 P0C879 139 aa7.46□□□□□ -1.22
COL4A6-208ENST00000538570 Q6JHZ5 121 aa7.46□□□□□ -1.22
COL4A6-208ENST00000538570 A0A087WZ39 114 aa7.46□□□□□ -1.22
COL4A6-208ENST00000538570 TNFRSF13BO14836 293 aaPredicted RBP7.46□□□□□ -1.22
COL4A6-208ENST00000538570 FAM222AQ5U5X8 452 aa7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms