RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 ODF1Q14990 250 aa8.16□□□□□ -1.1
CLIP1-209ENST00000537178 C14orf177Q52M58 125 aa8.16□□□□□ -1.1
CLIP1-209ENST00000537178 TTC28Q96AY4 2481 aa8.16□□□□□ -1.1
CLIP1-209ENST00000537178 PTPN13Q12923 2485 aa8.15□□□□□ -1.1
CLIP1-209ENST00000537178 TNRC6BQ9UPQ9 1833 aaKnown RBP8.15□□□□□ -1.1
CLIP1-209ENST00000537178 CASC2Q6XLA1 102 aa8.15□□□□□ -1.1
CLIP1-209ENST00000537178 PIP4P1Q86T03 277 aa8.15□□□□□ -1.1
CLIP1-209ENST00000537178 BRK1Q8WUW1 75 aa8.15□□□□□ -1.1
CLIP1-209ENST00000537178 IGKV2D-26A0A0A0MRZ7 120 aa8.15□□□□□ -1.1
CLIP1-209ENST00000537178 TRBV6-1A0A0K0K1D8 114 aa8.15□□□□□ -1.1
CLIP1-209ENST00000537178 K7ERS5 55 aa8.15□□□□□ -1.1
CLIP1-209ENST00000537178 UFSP1Q6NVU6 142 aa8.15□□□□□ -1.1
CLIP1-209ENST00000537178 ANKHD1Q8IWZ3 2542 aaKnown RBP8.15□□□□□ -1.1
CLIP1-209ENST00000537178 INSL3P51460 131 aa8.15□□□□□ -1.11
CLIP1-209ENST00000537178 TMEM263Q8WUH6 116 aaKnown RBP8.15□□□□□ -1.11
CLIP1-209ENST00000537178 MUC6Q6W4X9 2439 aa8.14□□□□□ -1.11
CLIP1-209ENST00000537178 C2CD3Q4AC94 2353 aa8.14□□□□□ -1.11
CLIP1-209ENST00000537178 MUC3AQ02505 3323 aa8.14□□□□□ -1.11
CLIP1-209ENST00000537178 IL17DQ8TAD2 202 aa8.14□□□□□ -1.11
CLIP1-209ENST00000537178 ZFHX2Q9C0A1 2572 aaPredicted RBP8.13□□□□□ -1.11
CLIP1-209ENST00000537178 USP17L23D6RBM5 183 aa8.13□□□□□ -1.11
CLIP1-209ENST00000537178 IGFL2Q6UWQ7 119 aa8.13□□□□□ -1.11
CLIP1-209ENST00000537178 Q6ZUT4 128 aa8.13□□□□□ -1.11
CLIP1-209ENST00000537178 RITA1Q96K30 269 aa8.13□□□□□ -1.11
CLIP1-209ENST00000537178 A0A0J9YX75 114 aa8.13□□□□□ -1.11
CLIP1-209ENST00000537178 MIAQ16674 131 aa8.13□□□□□ -1.11
CLIP1-209ENST00000537178 HIST2H2BDQ6DRA6 164 aa8.13□□□□□ -1.11
CLIP1-209ENST00000537178 SPTSSBQ8NFR3 76 aa8.13□□□□□ -1.11
CLIP1-209ENST00000537178 HIGD2AQ9BW72 106 aa8.13□□□□□ -1.11
CLIP1-209ENST00000537178 NDUFA11Q86Y39 141 aa8.13□□□□□ -1.11
CLIP1-209ENST00000537178 KIR2DL5BQ8NHK3 375 aa8.13□□□□□ -1.11
CLIP1-209ENST00000537178 RNF183Q96D59 192 aa8.13□□□□□ -1.11
CLIP1-209ENST00000537178 IGLV1-47P01700 117 aa8.12□□□□□ -1.11
CLIP1-209ENST00000537178 UPK3BQ9BT76 320 aa8.12□□□□□ -1.11
CLIP1-209ENST00000537178 OTOGLQ3ZCN5 2332 aa8.12□□□□□ -1.11
CLIP1-209ENST00000537178 SPRNQ5BIV9 151 aa8.12□□□□□ -1.11
CLIP1-209ENST00000537178 C4orf3Q8WVX3 66 aa8.12□□□□□ -1.11
CLIP1-209ENST00000537178 CUL9Q8IWT3 2517 aa8.12□□□□□ -1.11
CLIP1-209ENST00000537178 TRAV23DV6A0A075B6W5 121 aa8.11□□□□□ -1.11
CLIP1-209ENST00000537178 DEFB4AO15263 64 aa8.11□□□□□ -1.11
CLIP1-209ENST00000537178 G3V4G9 280 aa8.11□□□□□ -1.11
CLIP1-209ENST00000537178 SPATA12Q7Z6I5 190 aa8.11□□□□□ -1.11
CLIP1-209ENST00000537178 PTH2Q96A98 100 aa8.11□□□□□ -1.11
CLIP1-209ENST00000537178 MDFICQ9P1T7 246 aa8.11□□□□□ -1.11
CLIP1-209ENST00000537178 TRAV26-1A0A087WT03 109 aa8.1□□□□□ -1.11
CLIP1-209ENST00000537178 IGKV2-24A0A0C4DH68 120 aa8.1□□□□□ -1.11
CLIP1-209ENST00000537178 C20orf197Q8N268 126 aa8.1□□□□□ -1.11
CLIP1-209ENST00000537178 ZNF295-AS1Q8N0V1 137 aa8.1□□□□□ -1.11
CLIP1-209ENST00000537178 CEP192Q8TEP8 1941 aa8.1□□□□□ -1.11
CLIP1-209ENST00000537178 KRTAP27-1Q3LI81 207 aa8.1□□□□□ -1.11
CLIP1-209ENST00000537178 ATP5EP2Q5VTU8 51 aa8.1□□□□□ -1.11
CLIP1-209ENST00000537178 MRPL55Q7Z7F7 128 aaKnown RBP8.1□□□□□ -1.11
CLIP1-209ENST00000537178 NFE4Q86UQ8 179 aa8.09□□□□□ -1.11
CLIP1-209ENST00000537178 C19orf71A6NCJ1 209 aa8.09□□□□□ -1.11
CLIP1-209ENST00000537178 CCDC168Q8NDH2 2452 aa8.09□□□□□ -1.11
CLIP1-209ENST00000537178 DSCAML1Q8TD84 2053 aa8.09□□□□□ -1.11
CLIP1-209ENST00000537178 NCKAP5O14513 1909 aa8.09□□□□□ -1.11
CLIP1-209ENST00000537178 UQCRQO14949 82 aa8.09□□□□□ -1.11
CLIP1-209ENST00000537178 C3orf22Q8N5N4 141 aa8.09□□□□□ -1.11
CLIP1-209ENST00000537178 IGF2-ASQ6U949 168 aa8.08□□□□□ -1.12
CLIP1-209ENST00000537178 A0A0J9YXY3 114 aa8.08□□□□□ -1.12
CLIP1-209ENST00000537178 TCL1BO95988 128 aa8.08□□□□□ -1.12
CLIP1-209ENST00000537178 ZFAND2AQ8N6M9 145 aa8.08□□□□□ -1.12
CLIP1-209ENST00000537178 Q8N7P7 452 aa8.08□□□□□ -1.12
CLIP1-209ENST00000537178 KMT2EQ8IZD2 1858 aa8.08□□□□□ -1.12
CLIP1-209ENST00000537178 WT1P19544 449 aaPredicted RBP8.08□□□□□ -1.12
CLIP1-209ENST00000537178 DEFB1P60022 68 aa8.08□□□□□ -1.12
CLIP1-209ENST00000537178 CLUHP3Q96NS8 147 aa8.07□□□□□ -1.12
CLIP1-209ENST00000537178 FAM240AA0A1B0GVK7 77 aa8.07□□□□□ -1.12
CLIP1-209ENST00000537178 COL27A1Q8IZC6 1860 aaPredicted RBP8.07□□□□□ -1.12
CLIP1-209ENST00000537178 REG3AQ06141 175 aa8.07□□□□□ -1.12
CLIP1-209ENST00000537178 C11orf45Q8TAV5 145 aa8.07□□□□□ -1.12
CLIP1-209ENST00000537178 MAP6D1Q9H9H5 199 aa8.07□□□□□ -1.12
CLIP1-209ENST00000537178 PRR14LQ5THK1 2151 aa8.07□□□□□ -1.12
CLIP1-209ENST00000537178 PTPRBP23467 1997 aa8.07□□□□□ -1.12
CLIP1-209ENST00000537178 FAM236DA0A1B0GTK5 79 aa8.07□□□□□ -1.12
CLIP1-209ENST00000537178 FAM236CP0DP71 79 aa8.07□□□□□ -1.12
CLIP1-209ENST00000537178 UNQ9165/PRO28630Q6UXU0 137 aa8.07□□□□□ -1.12
CLIP1-209ENST00000537178 TNRC6AQ8NDV7 1962 aaKnown RBP8.07□□□□□ -1.12
CLIP1-209ENST00000537178 ZFP36P26651 326 aaKnown RBP8.06□□□□□ -1.12
CLIP1-209ENST00000537178 CEMP1Q6PRD7 247 aaPredicted RBP8.06□□□□□ -1.12
CLIP1-209ENST00000537178 NBEAQ8NFP9 2946 aa8.06□□□□□ -1.12
CLIP1-209ENST00000537178 LINC00269Q8N2A0 174 aa8.06□□□□□ -1.12
CLIP1-209ENST00000537178 ODF3Q96PU9 254 aa8.06□□□□□ -1.12
CLIP1-209ENST00000537178 SIRPDQ9H106 197 aa8.06□□□□□ -1.12
CLIP1-209ENST00000537178 A0A096LNI7 61 aa8.06□□□□□ -1.12
CLIP1-209ENST00000537178 FREM1Q5H8C1 2179 aa8.05□□□□□ -1.12
CLIP1-209ENST00000537178 A6NDX4 124 aa8.05□□□□□ -1.12
CLIP1-209ENST00000537178 SMIM9A6NGZ8 99 aa8.05□□□□□ -1.12
CLIP1-209ENST00000537178 NDUFV3P56181 108 aaKnown RBP8.05□□□□□ -1.12
CLIP1-209ENST00000537178 ADORA2A-AS1P86434 159 aa8.05□□□□□ -1.12
CLIP1-209ENST00000537178 FAM19A1Q7Z5A9 133 aa8.05□□□□□ -1.12
CLIP1-209ENST00000537178 ZFHX4Q86UP3 3567 aa8.05□□□□□ -1.12
CLIP1-209ENST00000537178 A0A1B0GXF2 115 aa8.04□□□□□ -1.12
CLIP1-209ENST00000537178 LYRM9A8MSI8 78 aa8.04□□□□□ -1.12
CLIP1-209ENST00000537178 H7C423 109 aa8.04□□□□□ -1.12
CLIP1-209ENST00000537178 CHCHD10Q8WYQ3 142 aaPredicted RBP8.04□□□□□ -1.12
CLIP1-209ENST00000537178 V9GYY9 64 aa8.04□□□□□ -1.12
CLIP1-209ENST00000537178 A0A087WZ39 114 aa8.04□□□□□ -1.12
CLIP1-209ENST00000537178 IBA57-AS1B1ANH7 110 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms