RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 PRR34Q9NV39 138 aa16.22■□□□□ 0.19
UPF3A-209ENST00000492270 A0A1B0GUT8 65 aa16.21■□□□□ 0.19
UPF3A-209ENST00000492270 COTL1Q14019 142 aa16.21■□□□□ 0.19
UPF3A-209ENST00000492270 PEA15Q15121 130 aa16.21■□□□□ 0.19
UPF3A-209ENST00000492270 ADIRFQ15847 76 aa16.21■□□□□ 0.19
UPF3A-209ENST00000492270 FRZBQ92765 325 aa16.21■□□□□ 0.19
UPF3A-209ENST00000492270 GAS8-AS1O95177 125 aa16.2■□□□□ 0.18
UPF3A-209ENST00000492270 AMTP48728 403 aa16.2■□□□□ 0.18
UPF3A-209ENST00000492270 MIAQ16674 131 aa16.2■□□□□ 0.18
UPF3A-209ENST00000492270 C20orf203Q8NBC4 194 aa16.2■□□□□ 0.18
UPF3A-209ENST00000492270 NAT8Q9UHE5 227 aa16.2■□□□□ 0.18
UPF3A-209ENST00000492270 IGLV4-60A0A075B6I1 120 aa16.19■□□□□ 0.18
UPF3A-209ENST00000492270 FAM231BA6NCW3 169 aa16.19■□□□□ 0.18
UPF3A-209ENST00000492270 FAM30AQ9NZY2 134 aa16.19■□□□□ 0.18
UPF3A-209ENST00000492270 HLA-DQA1P01909 254 aa16.18■□□□□ 0.18
UPF3A-209ENST00000492270 LINC01620Q4KN68 170 aa16.18■□□□□ 0.18
UPF3A-209ENST00000492270 NUP35Q8NFH5 326 aa16.17■□□□□ 0.18
UPF3A-209ENST00000492270 TMEM70Q9BUB7 260 aa16.17■□□□□ 0.18
UPF3A-209ENST00000492270 TMEM191AQ9H0A3 160 aa16.17■□□□□ 0.18
UPF3A-209ENST00000492270 DNAH8Q96JB1 4490 aa16.17■□□□□ 0.18
UPF3A-209ENST00000492270 SDHAF1A6NFY7 115 aa16.16■□□□□ 0.18
UPF3A-209ENST00000492270 REG3AQ06141 175 aa16.16■□□□□ 0.18
UPF3A-209ENST00000492270 KRTAP26-1Q6PEX3 210 aa16.16■□□□□ 0.18
UPF3A-209ENST00000492270 RNF185Q96GF1 192 aa16.16■□□□□ 0.18
UPF3A-209ENST00000492270 A0A1B0GUV1 79 aa16.15■□□□□ 0.18
UPF3A-209ENST00000492270 UBE2L6O14933 153 aa16.15■□□□□ 0.18
UPF3A-209ENST00000492270 SMDT1Q9H4I9 107 aa16.15■□□□□ 0.18
UPF3A-209ENST00000492270 IGLV10-54A0A075B6I4 117 aa16.14■□□□□ 0.17
UPF3A-209ENST00000492270 SMR3BP02814 79 aaPredicted RBP16.14■□□□□ 0.17
UPF3A-209ENST00000492270 AMN1Q8IY45 258 aa16.14■□□□□ 0.17
UPF3A-209ENST00000492270 USP17L23D6RBM5 183 aa16.13■□□□□ 0.17
UPF3A-209ENST00000492270 RAB4AP20338 218 aa16.13■□□□□ 0.17
UPF3A-209ENST00000492270 TRBV6-5A0A0K0K1A5 114 aa16.12■□□□□ 0.17
UPF3A-209ENST00000492270 EPM2AB3EWF7 344 aa16.12■□□□□ 0.17
UPF3A-209ENST00000492270 RPS10P46783 165 aaKnown RBP16.12■□□□□ 0.17
UPF3A-209ENST00000492270 RIGQ13278 110 aa16.12■□□□□ 0.17
UPF3A-209ENST00000492270 NAT8BQ9UHF3 227 aa16.12■□□□□ 0.17
UPF3A-209ENST00000492270 IGKV2D-29A0A075B6S2 120 aaPredicted RBP16.11■□□□□ 0.17
UPF3A-209ENST00000492270 IGKV2-29A2NJV5 120 aaPredicted RBP16.11■□□□□ 0.17
UPF3A-209ENST00000492270 APCSP02743 223 aa16.11■□□□□ 0.17
UPF3A-209ENST00000492270 SMIM27A0A1W2PRY6 76 aa16.1■□□□□ 0.17
UPF3A-209ENST00000492270 SMKR1H3BMG3 65 aa16.1■□□□□ 0.17
UPF3A-209ENST00000492270 NCR2O95944 276 aa16.1■□□□□ 0.17
UPF3A-209ENST00000492270 Q5VSD8 79 aa16.1■□□□□ 0.17
UPF3A-209ENST00000492270 FAT1Q14517 4588 aa16.1■□□□□ 0.17
UPF3A-209ENST00000492270 C14orf177Q52M58 125 aa16.09■□□□□ 0.17
UPF3A-209ENST00000492270 Q6ZSA8 131 aa16.09■□□□□ 0.17
UPF3A-209ENST00000492270 ST20Q9HBF5 79 aa16.09■□□□□ 0.17
UPF3A-209ENST00000492270 I3L3M4 83 aa16.08■□□□□ 0.16
UPF3A-209ENST00000492270 PMCHP20382 165 aa16.08■□□□□ 0.16
UPF3A-209ENST00000492270 MRAP2Q96G30 205 aa16.08■□□□□ 0.16
UPF3A-209ENST00000492270 VPS13BQ7Z7G8 4022 aa16.08■□□□□ 0.16
UPF3A-209ENST00000492270 TSHBP01222 138 aa16.07■□□□□ 0.16
UPF3A-209ENST00000492270 PRSS1P07477 247 aa16.07■□□□□ 0.16
UPF3A-209ENST00000492270 TMEM242Q9NWH2 141 aa16.07■□□□□ 0.16
UPF3A-209ENST00000492270 TRAV8-4A0A0B4J246 113 aa16.06■□□□□ 0.16
UPF3A-209ENST00000492270 CAMPP49913 170 aa16.05■□□□□ 0.16
UPF3A-209ENST00000492270 POLR2KP53803 58 aaKnown RBP16.05■□□□□ 0.16
UPF3A-209ENST00000492270 AMMECR1LQ6DCA0 310 aa16.05■□□□□ 0.16
UPF3A-209ENST00000492270 RNASEKQ6P5S7 137 aaKnown RBP16.05■□□□□ 0.16
UPF3A-209ENST00000492270 IGKV3OR2-268A0A0C4DH90 116 aa16.04■□□□□ 0.16
UPF3A-209ENST00000492270 FGF6P10767 208 aa16.04■□□□□ 0.16
UPF3A-209ENST00000492270 NRACQ8N912 160 aa16.03■□□□□ 0.16
UPF3A-209ENST00000492270 H7C423 109 aa16.02■□□□□ 0.16
UPF3A-209ENST00000492270 ESDP10768 282 aa16.02■□□□□ 0.16
UPF3A-209ENST00000492270 RAB14P61106 215 aa16.02■□□□□ 0.16
UPF3A-209ENST00000492270 MRPL51Q4U2R6 128 aaKnown RBP16.02■□□□□ 0.16
UPF3A-209ENST00000492270 FAM104BQ5XKR9 115 aa16.02■□□□□ 0.16
UPF3A-209ENST00000492270 TRBV27A0A0K0K1C4 114 aa16.01■□□□□ 0.15
UPF3A-209ENST00000492270 MRPL54Q6P161 138 aaKnown RBP16.01■□□□□ 0.15
UPF3A-209ENST00000492270 SCXQ7RTU7 201 aa15.99■□□□□ 0.15
UPF3A-209ENST00000492270 A0A1B0GW15 77 aa15.98■□□□□ 0.15
UPF3A-209ENST00000492270 GAGE12HA6NDE8 117 aa15.98■□□□□ 0.15
UPF3A-209ENST00000492270 SRRM2Q9UQ35 2752 aaKnown RBP15.98■□□□□ 0.15
UPF3A-209ENST00000492270 A0A1B0GXF2 115 aa15.97■□□□□ 0.15
UPF3A-209ENST00000492270 ZNF25P17030 456 aaPredicted RBP15.97■□□□□ 0.15
UPF3A-209ENST00000492270 SUMO2P61956 95 aaKnown RBP15.97■□□□□ 0.15
UPF3A-209ENST00000492270 FAM229AH3BQW9 127 aa15.96■□□□□ 0.15
UPF3A-209ENST00000492270 HBBP68871 147 aa15.96■□□□□ 0.15
UPF3A-209ENST00000492270 DGAT2L7PQ6IED9 249 aa15.96■□□□□ 0.15
UPF3A-209ENST00000492270 hDV102S1A0JD36 115 aa15.95■□□□□ 0.14
UPF3A-209ENST00000492270 VCYO14598 125 aa15.95■□□□□ 0.14
UPF3A-209ENST00000492270 PPP1R17O96001 155 aa15.95■□□□□ 0.14
UPF3A-209ENST00000492270 INAFM2P0DMQ5 153 aa15.95■□□□□ 0.14
UPF3A-209ENST00000492270 CLLU1Q5K131 121 aa15.95■□□□□ 0.14
UPF3A-209ENST00000492270 CLRN3Q8NCR9 226 aa15.95■□□□□ 0.14
UPF3A-209ENST00000492270 CHCHD10Q8WYQ3 142 aaPredicted RBP15.95■□□□□ 0.14
UPF3A-209ENST00000492270 BTF3L4Q96K17 158 aa15.95■□□□□ 0.14
UPF3A-209ENST00000492270 C7orf77A4D0Y5 90 aa15.94■□□□□ 0.14
UPF3A-209ENST00000492270 IFITM2Q01629 132 aa15.94■□□□□ 0.14
UPF3A-209ENST00000492270 C9orf163Q8N9P6 203 aa15.94■□□□□ 0.14
UPF3A-209ENST00000492270 TMEM101Q96IK0 257 aa15.94■□□□□ 0.14
UPF3A-209ENST00000492270 CHAC1Q9BUX1 264 aa15.94■□□□□ 0.14
UPF3A-209ENST00000492270 FCER1GP30273 86 aa15.93■□□□□ 0.14
UPF3A-209ENST00000492270 CKS2P33552 79 aa15.93■□□□□ 0.14
UPF3A-209ENST00000492270 MRPL52Q86TS9 123 aaKnown RBP15.93■□□□□ 0.14
UPF3A-209ENST00000492270 C15orf56Q8N910 161 aa15.93■□□□□ 0.14
UPF3A-209ENST00000492270 OR5A1Q8NGJ0 315 aa15.93■□□□□ 0.14
UPF3A-209ENST00000492270 LINC00862A6NCI5 91 aa15.92■□□□□ 0.14
UPF3A-209ENST00000492270 PPP1R2P9O14990 202 aa15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 260.1 ms