RNA–Protein interactions for RNA: ENST00000472217.1

USF1-204, Transcript of upstream transcription factor 1, humanhuman

TSL 2

Gene USF1, Length 1,097 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-204ENST00000472217 CEBPGP53567 150 aa5.86□□□□□ -1.47
USF1-204ENST00000472217 REG3AQ06141 175 aa5.86□□□□□ -1.47
USF1-204ENST00000472217 GATD1Q8NB37 220 aa5.86□□□□□ -1.47
USF1-204ENST00000472217 C20orf203Q8NBC4 194 aa5.86□□□□□ -1.47
USF1-204ENST00000472217 GTSF1Q8WW33 167 aa5.86□□□□□ -1.47
USF1-204ENST00000472217 TMEM243Q9BU79 118 aa5.86□□□□□ -1.47
USF1-204ENST00000472217 CHAC1Q9BUX1 264 aa5.86□□□□□ -1.47
USF1-204ENST00000472217 A0A1B0GUV1 79 aa5.85□□□□□ -1.47
USF1-204ENST00000472217 GATCO43716 136 aaKnown RBP5.85□□□□□ -1.47
USF1-204ENST00000472217 AMTP48728 403 aa5.85□□□□□ -1.47
USF1-204ENST00000472217 COTL1Q14019 142 aa5.85□□□□□ -1.47
USF1-204ENST00000472217 FAM231DQ6ZW35 169 aa5.85□□□□□ -1.47
USF1-204ENST00000472217 CIRBP-AS1Q8TBR5 109 aa5.85□□□□□ -1.47
USF1-204ENST00000472217 GFRA4Q9GZZ7 299 aa5.85□□□□□ -1.47
USF1-204ENST00000472217 SRRM2Q9UQ35 2752 aaKnown RBP5.85□□□□□ -1.47
USF1-204ENST00000472217 FOXA3P55318 350 aaPredicted RBP5.84□□□□□ -1.47
USF1-204ENST00000472217 RPL39LQ96EH5 51 aaKnown RBP5.84□□□□□ -1.47
USF1-204ENST00000472217 FAT1Q14517 4588 aa5.84□□□□□ -1.48
USF1-204ENST00000472217 TRAV8-4A0A0B4J246 113 aa5.83□□□□□ -1.48
USF1-204ENST00000472217 A8MWL6 223 aa5.83□□□□□ -1.48
USF1-204ENST00000472217 UBE2L6O14933 153 aa5.83□□□□□ -1.48
USF1-204ENST00000472217 CT83Q5H943 113 aa5.83□□□□□ -1.48
USF1-204ENST00000472217 DGAT2L7PQ6IED9 249 aa5.83□□□□□ -1.48
USF1-204ENST00000472217 SMIM15Q7Z3B0 74 aa5.83□□□□□ -1.48
USF1-204ENST00000472217 C9orf163Q8N9P6 203 aa5.83□□□□□ -1.48
USF1-204ENST00000472217 SMIM7Q9BQ49 75 aa5.83□□□□□ -1.48
USF1-204ENST00000472217 EIF5A2Q9GZV4 153 aaKnown RBP5.83□□□□□ -1.48
USF1-204ENST00000472217 SDHAF1A6NFY7 115 aa5.82□□□□□ -1.48
USF1-204ENST00000472217 KRTAP10-4P60372 401 aaPredicted RBP5.82□□□□□ -1.48
USF1-204ENST00000472217 LINC01551Q86U37 167 aa5.82□□□□□ -1.48
USF1-204ENST00000472217 FAM210AQ96ND0 272 aa5.82□□□□□ -1.48
USF1-204ENST00000472217 DMBT1Q9UGM3 2413 aaPredicted RBP5.82□□□□□ -1.48
USF1-204ENST00000472217 FLG2Q5D862 2391 aaPredicted RBP5.81□□□□□ -1.48
USF1-204ENST00000472217 A0A1B0GVG6 124 aa5.81□□□□□ -1.48
USF1-204ENST00000472217 hDV102S1A0JD36 115 aa5.81□□□□□ -1.48
USF1-204ENST00000472217 ZNF727A8MUV8 499 aa5.81□□□□□ -1.48
USF1-204ENST00000472217 PANO1I0J062 215 aa5.81□□□□□ -1.48
USF1-204ENST00000472217 NDUFS6O75380 124 aaKnown RBP5.81□□□□□ -1.48
USF1-204ENST00000472217 SRP19P09132 144 aaKnown RBP5.81□□□□□ -1.48
USF1-204ENST00000472217 TEX261Q6UWH6 196 aa5.81□□□□□ -1.48
USF1-204ENST00000472217 CLRN3Q8NCR9 226 aa5.81□□□□□ -1.48
USF1-204ENST00000472217 VPS13BQ7Z7G8 4022 aa5.81□□□□□ -1.48
USF1-204ENST00000472217 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.8□□□□□ -1.48
USF1-204ENST00000472217 IGKV3OR2-268A0A0C4DH90 116 aa5.8□□□□□ -1.48
USF1-204ENST00000472217 A0A1B0GUT8 65 aa5.8□□□□□ -1.48
USF1-204ENST00000472217 IGKV2-29A2NJV5 120 aaPredicted RBP5.8□□□□□ -1.48
USF1-204ENST00000472217 HIGD1CA8MV81 97 aa5.8□□□□□ -1.48
USF1-204ENST00000472217 GAS8-AS1O95177 125 aa5.8□□□□□ -1.48
USF1-204ENST00000472217 NCR2O95944 276 aa5.8□□□□□ -1.48
USF1-204ENST00000472217 APCSP02743 223 aa5.8□□□□□ -1.48
USF1-204ENST00000472217 CNBPP62633 177 aaKnown RBP5.8□□□□□ -1.48
USF1-204ENST00000472217 AMMECR1LQ6DCA0 310 aa5.8□□□□□ -1.48
USF1-204ENST00000472217 SDIM1Q6ZPB5 146 aa5.8□□□□□ -1.48
USF1-204ENST00000472217 TSKUQ8WUA8 353 aa5.8□□□□□ -1.48
USF1-204ENST00000472217 BORCS7Q96B45 105 aa5.8□□□□□ -1.48
USF1-204ENST00000472217 OSTCQ9NRP0 149 aa5.8□□□□□ -1.48
USF1-204ENST00000472217 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.8□□□□□ -1.48
USF1-204ENST00000472217 TRBV6-5A0A0K0K1A5 114 aa5.79□□□□□ -1.48
USF1-204ENST00000472217 FAM231BA6NCW3 169 aa5.79□□□□□ -1.48
USF1-204ENST00000472217 GAGE12HA6NDE8 117 aa5.79□□□□□ -1.48
USF1-204ENST00000472217 H7C423 109 aa5.79□□□□□ -1.48
USF1-204ENST00000472217 I3L3M4 83 aa5.79□□□□□ -1.48
USF1-204ENST00000472217 SLPIP03973 132 aa5.79□□□□□ -1.48
USF1-204ENST00000472217 FGF6P10767 208 aa5.79□□□□□ -1.48
USF1-204ENST00000472217 PMCHP20382 165 aa5.79□□□□□ -1.48
USF1-204ENST00000472217 LCE2CQ5TA81 110 aa5.79□□□□□ -1.48
USF1-204ENST00000472217 RNASEKQ6P5S7 137 aaKnown RBP5.79□□□□□ -1.48
USF1-204ENST00000472217 C15orf56Q8N910 161 aa5.79□□□□□ -1.48
USF1-204ENST00000472217 TMEM191AQ9H0A3 160 aa5.79□□□□□ -1.48
USF1-204ENST00000472217 V9GYV3 84 aa5.79□□□□□ -1.48
USF1-204ENST00000472217 DNAH8Q96JB1 4490 aa5.78□□□□□ -1.48
USF1-204ENST00000472217 MYCBP2O75592 4640 aa5.78□□□□□ -1.48
USF1-204ENST00000472217 KRTAP29-1A8MX34 341 aaPredicted RBP5.78□□□□□ -1.48
USF1-204ENST00000472217 TSHBP01222 138 aa5.78□□□□□ -1.48
USF1-204ENST00000472217 RPS10P46783 165 aaKnown RBP5.78□□□□□ -1.48
USF1-204ENST00000472217 AMN1Q8IY45 258 aa5.78□□□□□ -1.48
USF1-204ENST00000472217 RNF185Q96GF1 192 aa5.78□□□□□ -1.48
USF1-204ENST00000472217 AP5S1Q9NUS5 200 aa5.78□□□□□ -1.48
USF1-204ENST00000472217 TMEM242Q9NWH2 141 aa5.78□□□□□ -1.48
USF1-204ENST00000472217 IGHV3-64A0A075B6Q5 118 aa5.77□□□□□ -1.49
USF1-204ENST00000472217 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.77□□□□□ -1.49
USF1-204ENST00000472217 ESDP10768 282 aa5.77□□□□□ -1.49
USF1-204ENST00000472217 ZNF25P17030 456 aaPredicted RBP5.77□□□□□ -1.49
USF1-204ENST00000472217 RAB4AP20338 218 aa5.77□□□□□ -1.49
USF1-204ENST00000472217 RPL37AP61513 92 aaKnown RBP5.77□□□□□ -1.49
USF1-204ENST00000472217 CIRBPQ14011 172 aaKnown RBP5.77□□□□□ -1.49
USF1-204ENST00000472217 CHCHD10Q8WYQ3 142 aaPredicted RBP5.77□□□□□ -1.49
USF1-204ENST00000472217 ISOC2Q96AB3 205 aa5.77□□□□□ -1.49
USF1-204ENST00000472217 ST20Q9HBF5 79 aa5.77□□□□□ -1.49
USF1-204ENST00000472217 HERC1Q15751 4861 aa5.77□□□□□ -1.49
USF1-204ENST00000472217 C9JQL5 133 aa5.76□□□□□ -1.49
USF1-204ENST00000472217 SMKR1H3BMG3 65 aa5.76□□□□□ -1.49
USF1-204ENST00000472217 POLR2KP53803 58 aaKnown RBP5.76□□□□□ -1.49
USF1-204ENST00000472217 RPL23P62829 140 aaKnown RBP5.76□□□□□ -1.49
USF1-204ENST00000472217 ADIRFQ15847 76 aa5.76□□□□□ -1.49
USF1-204ENST00000472217 TMEM241Q24JQ0 296 aa5.76□□□□□ -1.49
USF1-204ENST00000472217 HIGD2BQ4VC39 106 aa5.76□□□□□ -1.49
USF1-204ENST00000472217 NUP35Q8NFH5 326 aa5.76□□□□□ -1.49
USF1-204ENST00000472217 OR5A1Q8NGJ0 315 aa5.76□□□□□ -1.49
USF1-204ENST00000472217 MRAP2Q96G30 205 aa5.76□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms