RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 NRACQ8N912 160 aa8.08□□□□□ -1.12
VPS13D-204ENST00000469054 DEFB104AQ8WTQ1 72 aa8.08□□□□□ -1.12
VPS13D-204ENST00000469054 CHCHD5Q9BSY4 110 aa8.08□□□□□ -1.12
VPS13D-204ENST00000469054 TMEM70Q9BUB7 260 aa8.08□□□□□ -1.12
VPS13D-204ENST00000469054 CHCHD7Q9BUK0 85 aa8.08□□□□□ -1.12
VPS13D-204ENST00000469054 URGCP-MRPS24S4R325 110 aa8.08□□□□□ -1.12
VPS13D-204ENST00000469054 A0A087WX48 190 aa8.07□□□□□ -1.12
VPS13D-204ENST00000469054 IBA57-AS1B1ANH7 110 aa8.07□□□□□ -1.12
VPS13D-204ENST00000469054 I3L3M4 83 aa8.07□□□□□ -1.12
VPS13D-204ENST00000469054 POLR2KP53803 58 aaKnown RBP8.07□□□□□ -1.12
VPS13D-204ENST00000469054 LINC00336Q6ZUF6 198 aa8.07□□□□□ -1.12
VPS13D-204ENST00000469054 DNAH17Q9UFH2 4485 aa8.07□□□□□ -1.12
VPS13D-204ENST00000469054 TRBV24-1A0A075B6N3 115 aa8.06□□□□□ -1.12
VPS13D-204ENST00000469054 D6R8Y8 96 aa8.06□□□□□ -1.12
VPS13D-204ENST00000469054 PPBPP02775 128 aa8.06□□□□□ -1.12
VPS13D-204ENST00000469054 PMCHP20382 165 aa8.06□□□□□ -1.12
VPS13D-204ENST00000469054 PKIAP61925 76 aa8.06□□□□□ -1.12
VPS13D-204ENST00000469054 SUMO2P61956 95 aaKnown RBP8.06□□□□□ -1.12
VPS13D-204ENST00000469054 GAGE6Q13070 117 aa8.06□□□□□ -1.12
VPS13D-204ENST00000469054 TMEM136Q6ZRR5 245 aa8.06□□□□□ -1.12
VPS13D-204ENST00000469054 TMEM243Q9BU79 118 aa8.06□□□□□ -1.12
VPS13D-204ENST00000469054 TRBV27A0A0K0K1C4 114 aa8.05□□□□□ -1.12
VPS13D-204ENST00000469054 VCYO14598 125 aa8.05□□□□□ -1.12
VPS13D-204ENST00000469054 TNFRSF6BO95407 300 aa8.05□□□□□ -1.12
VPS13D-204ENST00000469054 AMTP48728 403 aa8.05□□□□□ -1.12
VPS13D-204ENST00000469054 ATRAIDQ6UW56 229 aa8.05□□□□□ -1.12
VPS13D-204ENST00000469054 NFE4Q86UQ8 179 aa8.05□□□□□ -1.12
VPS13D-204ENST00000469054 ORMDL3Q8N138 153 aa8.05□□□□□ -1.12
VPS13D-204ENST00000469054 C20orf78Q9BR46 151 aa8.05□□□□□ -1.12
VPS13D-204ENST00000469054 FAT2Q9NYQ8 4349 aa8.05□□□□□ -1.12
VPS13D-204ENST00000469054 PRSS29PA6NIE9 313 aa8.04□□□□□ -1.12
VPS13D-204ENST00000469054 PHOX2AO14813 284 aa8.04□□□□□ -1.12
VPS13D-204ENST00000469054 NPYP01303 97 aa8.04□□□□□ -1.12
VPS13D-204ENST00000469054 APCSP02743 223 aa8.04□□□□□ -1.12
VPS13D-204ENST00000469054 LAGE3Q14657 143 aa8.04□□□□□ -1.12
VPS13D-204ENST00000469054 ELOBQ15370 118 aa8.04□□□□□ -1.12
VPS13D-204ENST00000469054 MPV17L2Q567V2 206 aa8.04□□□□□ -1.12
VPS13D-204ENST00000469054 Q6ZRN7 208 aaPredicted RBP8.04□□□□□ -1.12
VPS13D-204ENST00000469054 KLK12Q9UKR0 248 aa8.04□□□□□ -1.12
VPS13D-204ENST00000469054 UBE2L6O14933 153 aa8.03□□□□□ -1.12
VPS13D-204ENST00000469054 TSHBP01222 138 aa8.03□□□□□ -1.12
VPS13D-204ENST00000469054 RBX1P62877 108 aa8.03□□□□□ -1.12
VPS13D-204ENST00000469054 RPL32P62910 135 aaKnown RBP8.03□□□□□ -1.12
VPS13D-204ENST00000469054 COX19Q49B96 90 aa8.03□□□□□ -1.12
VPS13D-204ENST00000469054 Q8N976 141 aa8.03□□□□□ -1.12
VPS13D-204ENST00000469054 PRELID3AQ96N28 172 aa8.03□□□□□ -1.12
VPS13D-204ENST00000469054 GNB1LQ9BYB4 327 aa8.03□□□□□ -1.12
VPS13D-204ENST00000469054 TRAV8-3A0A0A6YYJ7 113 aa8.02□□□□□ -1.13
VPS13D-204ENST00000469054 A0A1B0GUV1 79 aa8.02□□□□□ -1.13
VPS13D-204ENST00000469054 HLA-DQA1P01909 254 aa8.02□□□□□ -1.13
VPS13D-204ENST00000469054 ESDP10768 282 aa8.02□□□□□ -1.13
VPS13D-204ENST00000469054 KIR2DL4Q99706 377 aa8.02□□□□□ -1.13
VPS13D-204ENST00000469054 Q9HAA7 133 aa8.02□□□□□ -1.13
VPS13D-204ENST00000469054 LAMTOR2Q9Y2Q5 125 aa8.02□□□□□ -1.13
VPS13D-204ENST00000469054 TGIF2-C20orf24A0A0A6YYL0 155 aa8.01□□□□□ -1.13
VPS13D-204ENST00000469054 H7C423 109 aa8.01□□□□□ -1.13
VPS13D-204ENST00000469054 ANGP03950 147 aaKnown RBP8.01□□□□□ -1.13
VPS13D-204ENST00000469054 FCER1GP30273 86 aa8.01□□□□□ -1.13
VPS13D-204ENST00000469054 UBE2WQ96B02 151 aa8.01□□□□□ -1.13
VPS13D-204ENST00000469054 FRAS1Q86XX4 4008 aa8.01□□□□□ -1.13
VPS13D-204ENST00000469054 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8□□□□□ -1.13
VPS13D-204ENST00000469054 IGKV2-29A2NJV5 120 aaPredicted RBP8□□□□□ -1.13
VPS13D-204ENST00000469054 PRSS47A8MTI9 375 aa8□□□□□ -1.13
VPS13D-204ENST00000469054 Q0VG73 95 aa8□□□□□ -1.13
VPS13D-204ENST00000469054 C20orf203Q8NBC4 194 aa8□□□□□ -1.13
VPS13D-204ENST00000469054 SMIM2Q9BVW6 85 aa8□□□□□ -1.13
VPS13D-204ENST00000469054 IGLV4-60A0A075B6I1 120 aa7.99□□□□□ -1.13
VPS13D-204ENST00000469054 TCAPO15273 167 aa7.99□□□□□ -1.13
VPS13D-204ENST00000469054 CRPP02741 224 aa7.99□□□□□ -1.13
VPS13D-204ENST00000469054 MT-ND6P03923 174 aa7.99□□□□□ -1.13
VPS13D-204ENST00000469054 KIAA1644Q3SXP7 199 aa7.99□□□□□ -1.13
VPS13D-204ENST00000469054 ENHOQ6UWT2 76 aa7.99□□□□□ -1.13
VPS13D-204ENST00000469054 LINC00269Q8N2A0 174 aa7.99□□□□□ -1.13
VPS13D-204ENST00000469054 TM2D2Q9BX73 214 aa7.99□□□□□ -1.13
VPS13D-204ENST00000469054 MAP1LC3AQ9H492 121 aa7.99□□□□□ -1.13
VPS13D-204ENST00000469054 A0A1B0GVY2 172 aa7.98□□□□□ -1.13
VPS13D-204ENST00000469054 FGF6P10767 208 aa7.98□□□□□ -1.13
VPS13D-204ENST00000469054 AMMECR1LQ6DCA0 310 aa7.98□□□□□ -1.13
VPS13D-204ENST00000469054 RNASEKQ6P5S7 137 aaKnown RBP7.98□□□□□ -1.13
VPS13D-204ENST00000469054 RMI2Q96E14 147 aa7.98□□□□□ -1.13
VPS13D-204ENST00000469054 YPEL4Q96NS1 127 aa7.98□□□□□ -1.13
VPS13D-204ENST00000469054 SMCO4Q9NRQ5 59 aa7.98□□□□□ -1.13
VPS13D-204ENST00000469054 PRR34Q9NV39 138 aa7.98□□□□□ -1.13
VPS13D-204ENST00000469054 COX11Q9Y6N1 276 aa7.98□□□□□ -1.13
VPS13D-204ENST00000469054 IGKV2D-24A0A075B6R9 120 aa7.97□□□□□ -1.13
VPS13D-204ENST00000469054 LOC389332A0A1B0GUA5 103 aa7.97□□□□□ -1.13
VPS13D-204ENST00000469054 PSCAO43653 123 aa7.97□□□□□ -1.13
VPS13D-204ENST00000469054 ZNF25P17030 456 aaPredicted RBP7.97□□□□□ -1.13
VPS13D-204ENST00000469054 FABP9Q0Z7S8 132 aa7.97□□□□□ -1.13
VPS13D-204ENST00000469054 MRPL18Q9H0U6 180 aaKnown RBP7.97□□□□□ -1.13
VPS13D-204ENST00000469054 RAB5AP20339 215 aa7.96□□□□□ -1.14
VPS13D-204ENST00000469054 REG3AQ06141 175 aa7.96□□□□□ -1.14
VPS13D-204ENST00000469054 MIAQ16674 131 aa7.96□□□□□ -1.14
VPS13D-204ENST00000469054 CLPSL2Q6UWE3 100 aa7.96□□□□□ -1.14
VPS13D-204ENST00000469054 MRPL52Q86TS9 123 aaKnown RBP7.96□□□□□ -1.14
VPS13D-204ENST00000469054 CBLN2Q8IUK8 224 aa7.96□□□□□ -1.14
VPS13D-204ENST00000469054 Q8N8P6 123 aa7.96□□□□□ -1.14
VPS13D-204ENST00000469054 TMEM18Q96B42 140 aa7.96□□□□□ -1.14
VPS13D-204ENST00000469054 TMEM101Q96IK0 257 aa7.96□□□□□ -1.14
VPS13D-204ENST00000469054 TRAPPC1Q9Y5R8 145 aa7.96□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms