RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 COX19Q49B96 90 aa13.4□□□□□ -0.26
COL9A3-204ENST00000463487 C20orf78Q9BR46 151 aa13.4□□□□□ -0.26
COL9A3-204ENST00000463487 TRAV8-3A0A0A6YYJ7 113 aa13.39□□□□□ -0.27
COL9A3-204ENST00000463487 D6R8Y8 96 aa13.39□□□□□ -0.27
COL9A3-204ENST00000463487 VCYO14598 125 aa13.39□□□□□ -0.27
COL9A3-204ENST00000463487 PHOX2AO14813 284 aa13.39□□□□□ -0.27
COL9A3-204ENST00000463487 RTL8CO15255 209 aa13.39□□□□□ -0.27
COL9A3-204ENST00000463487 GAS8-AS1O95177 125 aa13.39□□□□□ -0.27
COL9A3-204ENST00000463487 NRACQ8N912 160 aa13.39□□□□□ -0.27
COL9A3-204ENST00000463487 KIR2DL4Q99706 377 aa13.39□□□□□ -0.27
COL9A3-204ENST00000463487 TRBV24-1A0A075B6N3 115 aa13.38□□□□□ -0.27
COL9A3-204ENST00000463487 TRBV27A0A0K0K1C4 114 aa13.38□□□□□ -0.27
COL9A3-204ENST00000463487 PRSS29PA6NIE9 313 aa13.38□□□□□ -0.27
COL9A3-204ENST00000463487 SLC7A5P1Q8MH63 180 aa13.38□□□□□ -0.27
COL9A3-204ENST00000463487 LAMTOR2Q9Y2Q5 125 aa13.38□□□□□ -0.27
COL9A3-204ENST00000463487 TCAPO15273 167 aa13.37□□□□□ -0.27
COL9A3-204ENST00000463487 TNFRSF6BO95407 300 aa13.37□□□□□ -0.27
COL9A3-204ENST00000463487 FCER1GP30273 86 aa13.37□□□□□ -0.27
COL9A3-204ENST00000463487 POLR2KP53803 58 aaKnown RBP13.37□□□□□ -0.27
COL9A3-204ENST00000463487 GAGE6Q13070 117 aa13.37□□□□□ -0.27
COL9A3-204ENST00000463487 TMEM136Q6ZRR5 245 aa13.37□□□□□ -0.27
COL9A3-204ENST00000463487 H7C423 109 aa13.36□□□□□ -0.27
COL9A3-204ENST00000463487 HLA-DQA1P01909 254 aa13.36□□□□□ -0.27
COL9A3-204ENST00000463487 MPV17L2Q567V2 206 aa13.36□□□□□ -0.27
COL9A3-204ENST00000463487 RMI2Q96E14 147 aa13.36□□□□□ -0.27
COL9A3-204ENST00000463487 PRELID3AQ96N28 172 aa13.36□□□□□ -0.27
COL9A3-204ENST00000463487 Q9HAA7 133 aa13.36□□□□□ -0.27
COL9A3-204ENST00000463487 KLK12Q9UKR0 248 aa13.36□□□□□ -0.27
COL9A3-204ENST00000463487 PSCAO43653 123 aa13.35□□□□□ -0.27
COL9A3-204ENST00000463487 CRPP02741 224 aa13.35□□□□□ -0.27
COL9A3-204ENST00000463487 ANGP03950 147 aaKnown RBP13.35□□□□□ -0.27
COL9A3-204ENST00000463487 RPL32P62910 135 aaKnown RBP13.35□□□□□ -0.27
COL9A3-204ENST00000463487 Q0VG73 95 aa13.35□□□□□ -0.27
COL9A3-204ENST00000463487 Q8N3U1 123 aa13.35□□□□□ -0.27
COL9A3-204ENST00000463487 TM2D2Q9BX73 214 aa13.35□□□□□ -0.27
COL9A3-204ENST00000463487 MT-ND6P03923 174 aa13.34□□□□□ -0.27
COL9A3-204ENST00000463487 AMMECR1LQ6DCA0 310 aa13.34□□□□□ -0.27
COL9A3-204ENST00000463487 ATRAIDQ6UW56 229 aa13.34□□□□□ -0.27
COL9A3-204ENST00000463487 DEFB104AQ8WTQ1 72 aa13.34□□□□□ -0.27
COL9A3-204ENST00000463487 GNB1LQ9BYB4 327 aa13.34□□□□□ -0.27
COL9A3-204ENST00000463487 RBX1P62877 108 aa13.33□□□□□ -0.28
COL9A3-204ENST00000463487 SMAGPQ0VAQ4 97 aa13.33□□□□□ -0.28
COL9A3-204ENST00000463487 SMIM2Q9BVW6 85 aa13.33□□□□□ -0.28
COL9A3-204ENST00000463487 COX11Q9Y6N1 276 aa13.33□□□□□ -0.28
COL9A3-204ENST00000463487 A0A1B0GUV1 79 aa13.32□□□□□ -0.28
COL9A3-204ENST00000463487 TSHBP01222 138 aa13.32□□□□□ -0.28
COL9A3-204ENST00000463487 NPYP01303 97 aa13.32□□□□□ -0.28
COL9A3-204ENST00000463487 UBE2WQ96B02 151 aa13.32□□□□□ -0.28
COL9A3-204ENST00000463487 MAP1LC3AQ9H492 121 aa13.32□□□□□ -0.28
COL9A3-204ENST00000463487 EREGO14944 169 aa13.31□□□□□ -0.28
COL9A3-204ENST00000463487 Q8N976 141 aa13.31□□□□□ -0.28
COL9A3-204ENST00000463487 TMEM18Q96B42 140 aa13.31□□□□□ -0.28
COL9A3-204ENST00000463487 ZNF25P17030 456 aaPredicted RBP13.3□□□□□ -0.28
COL9A3-204ENST00000463487 Q6ZRN7 208 aaPredicted RBP13.3□□□□□ -0.28
COL9A3-204ENST00000463487 TMEM101Q96IK0 257 aa13.3□□□□□ -0.28
COL9A3-204ENST00000463487 RAB5AP20339 215 aa13.29□□□□□ -0.28
COL9A3-204ENST00000463487 TNP2Q05952 138 aa13.29□□□□□ -0.28
COL9A3-204ENST00000463487 RNASEKQ6P5S7 137 aaKnown RBP13.29□□□□□ -0.28
COL9A3-204ENST00000463487 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.28□□□□□ -0.28
COL9A3-204ENST00000463487 IGKV2-29A2NJV5 120 aaPredicted RBP13.28□□□□□ -0.28
COL9A3-204ENST00000463487 ESDP10768 282 aa13.28□□□□□ -0.28
COL9A3-204ENST00000463487 MIAQ16674 131 aa13.28□□□□□ -0.28
COL9A3-204ENST00000463487 SMCO4Q9NRQ5 59 aa13.28□□□□□ -0.28
COL9A3-204ENST00000463487 IGKV2D-24A0A075B6R9 120 aa13.27□□□□□ -0.29
COL9A3-204ENST00000463487 FGF6P10767 208 aa13.27□□□□□ -0.29
COL9A3-204ENST00000463487 LINC00269Q8N2A0 174 aa13.27□□□□□ -0.29
COL9A3-204ENST00000463487 C1orf43Q9BWL3 253 aa13.27□□□□□ -0.29
COL9A3-204ENST00000463487 TGIF2-C20orf24A0A0A6YYL0 155 aa13.26□□□□□ -0.29
COL9A3-204ENST00000463487 PRSS47A8MTI9 375 aa13.26□□□□□ -0.29
COL9A3-204ENST00000463487 MRPL18Q9H0U6 180 aaKnown RBP13.26□□□□□ -0.29
COL9A3-204ENST00000463487 PRR34Q9NV39 138 aa13.26□□□□□ -0.29
COL9A3-204ENST00000463487 REG3AQ06141 175 aa13.25□□□□□ -0.29
COL9A3-204ENST00000463487 DGAT2L7PQ6IED9 249 aa13.25□□□□□ -0.29
COL9A3-204ENST00000463487 C20orf203Q8NBC4 194 aa13.25□□□□□ -0.29
COL9A3-204ENST00000463487 OR5A1Q8NGJ0 315 aa13.25□□□□□ -0.29
COL9A3-204ENST00000463487 NXT2Q9NPJ8 142 aaKnown RBP13.25□□□□□ -0.29
COL9A3-204ENST00000463487 IGLV4-60A0A075B6I1 120 aa13.24□□□□□ -0.29
COL9A3-204ENST00000463487 LOC389332A0A1B0GUA5 103 aa13.24□□□□□ -0.29
COL9A3-204ENST00000463487 K7EMI3 77 aa13.24□□□□□ -0.29
COL9A3-204ENST00000463487 FABP9Q0Z7S8 132 aa13.24□□□□□ -0.29
COL9A3-204ENST00000463487 KIAA1644Q3SXP7 199 aa13.24□□□□□ -0.29
COL9A3-204ENST00000463487 ENHOQ6UWT2 76 aa13.24□□□□□ -0.29
COL9A3-204ENST00000463487 MRPL52Q86TS9 123 aaKnown RBP13.24□□□□□ -0.29
COL9A3-204ENST00000463487 CLPSL2Q6UWE3 100 aa13.23□□□□□ -0.29
COL9A3-204ENST00000463487 Q8N8P6 123 aa13.23□□□□□ -0.29
COL9A3-204ENST00000463487 TRAPPC1Q9Y5R8 145 aa13.23□□□□□ -0.29
COL9A3-204ENST00000463487 TRAV8-4A0A0B4J246 113 aa13.22□□□□□ -0.29
COL9A3-204ENST00000463487 CSDC2Q9Y534 153 aaKnown RBP13.21□□□□□ -0.29
COL9A3-204ENST00000463487 FRAS1Q86XX4 4008 aa13.21□□□□□ -0.29
COL9A3-204ENST00000463487 A0A087WTM6 91 aa13.2□□□□□ -0.3
COL9A3-204ENST00000463487 A0A1B0GVY2 172 aa13.2□□□□□ -0.3
COL9A3-204ENST00000463487 G0S2P27469 103 aa13.2□□□□□ -0.3
COL9A3-204ENST00000463487 ORMDL2Q53FV1 153 aa13.2□□□□□ -0.3
COL9A3-204ENST00000463487 CBLN2Q8IUK8 224 aa13.2□□□□□ -0.3
COL9A3-204ENST00000463487 TIMM21Q9BVV7 248 aa13.2□□□□□ -0.3
COL9A3-204ENST00000463487 PRSS3P2Q8NHM4 247 aa13.19□□□□□ -0.3
COL9A3-204ENST00000463487 ALKBH7Q9BT30 221 aaPredicted RBP13.19□□□□□ -0.3
COL9A3-204ENST00000463487 SPANXA1Q9NS26 97 aa13.19□□□□□ -0.3
COL9A3-204ENST00000463487 ZNF664Q8N3J9 261 aa13.18□□□□□ -0.3
COL9A3-204ENST00000463487 UBE2D4Q9Y2X8 147 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms