RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 SERF1AO75920 110 aa8.11□□□□□ -1.11
VPS52-213ENST00000461743 DNAH10OSP0CZ25 163 aa8.11□□□□□ -1.11
VPS52-213ENST00000461743 LINC00310P59036 64 aa8.11□□□□□ -1.11
VPS52-213ENST00000461743 RPL36AP83881 106 aaKnown RBP8.11□□□□□ -1.11
VPS52-213ENST00000461743 LYZL1Q6UWQ5 148 aa8.11□□□□□ -1.11
VPS52-213ENST00000461743 C10orf126Q8N4M7 172 aa8.11□□□□□ -1.11
VPS52-213ENST00000461743 RPL36ALQ969Q0 106 aaKnown RBP8.11□□□□□ -1.11
VPS52-213ENST00000461743 GFRA4Q9GZZ7 299 aa8.11□□□□□ -1.11
VPS52-213ENST00000461743 KIF25-AS1Q9Y6Z4 181 aa8.11□□□□□ -1.11
VPS52-213ENST00000461743 TRBV7-3A0A075B6L6 115 aa8.1□□□□□ -1.11
VPS52-213ENST00000461743 C20orf202A1L168 122 aa8.1□□□□□ -1.11
VPS52-213ENST00000461743 GAGE12JA6NER3 117 aa8.1□□□□□ -1.11
VPS52-213ENST00000461743 MT-ND6P03923 174 aa8.1□□□□□ -1.11
VPS52-213ENST00000461743 RBX1P62877 108 aa8.1□□□□□ -1.11
VPS52-213ENST00000461743 GAGE4Q13068 117 aa8.1□□□□□ -1.11
VPS52-213ENST00000461743 GAGE5Q13069 117 aa8.1□□□□□ -1.11
VPS52-213ENST00000461743 GAGE13Q4V321 117 aa8.1□□□□□ -1.11
VPS52-213ENST00000461743 LINC01556Q5JQF7 62 aa8.1□□□□□ -1.11
VPS52-213ENST00000461743 KRTAP1-5Q9BYS1 174 aa8.1□□□□□ -1.11
VPS52-213ENST00000461743 PAM16Q9Y3D7 125 aa8.1□□□□□ -1.11
VPS52-213ENST00000461743 MUC21A0A0G2JKD1 596 aa8.09□□□□□ -1.11
VPS52-213ENST00000461743 MUC21A0A140T8X8 626 aa8.09□□□□□ -1.11
VPS52-213ENST00000461743 EVI2AP22794 236 aa8.09□□□□□ -1.11
VPS52-213ENST00000461743 HNRNPA3P51991 378 aaKnown RBP8.09□□□□□ -1.11
VPS52-213ENST00000461743 FOXA3P55318 350 aaPredicted RBP8.09□□□□□ -1.11
VPS52-213ENST00000461743 UBE2D3P61077 147 aa8.09□□□□□ -1.11
VPS52-213ENST00000461743 UBE2D2P62837 147 aa8.09□□□□□ -1.11
VPS52-213ENST00000461743 BATFQ16520 125 aa8.09□□□□□ -1.11
VPS52-213ENST00000461743 OR10J3Q5JRS4 329 aa8.09□□□□□ -1.11
VPS52-213ENST00000461743 WFDC10BQ8IUB3 73 aa8.09□□□□□ -1.11
VPS52-213ENST00000461743 Q8N976 141 aa8.09□□□□□ -1.11
VPS52-213ENST00000461743 TSKUQ8WUA8 353 aa8.09□□□□□ -1.11
VPS52-213ENST00000461743 MRPL18Q9H0U6 180 aaKnown RBP8.09□□□□□ -1.11
VPS52-213ENST00000461743 DPH3P1Q9H4G8 78 aa8.09□□□□□ -1.11
VPS52-213ENST00000461743 IGHV3-38A0A0C4DH36 116 aa8.08□□□□□ -1.12
VPS52-213ENST00000461743 PRSS29PA6NIE9 313 aa8.08□□□□□ -1.12
VPS52-213ENST00000461743 F5H697 171 aa8.08□□□□□ -1.12
VPS52-213ENST00000461743 IGLC3P0DOY3 106 aa8.08□□□□□ -1.12
VPS52-213ENST00000461743 NTF3P20783 257 aa8.08□□□□□ -1.12
VPS52-213ENST00000461743 LINC00315P59091 139 aa8.08□□□□□ -1.12
VPS52-213ENST00000461743 SPATA45Q537H7 98 aa8.08□□□□□ -1.12
VPS52-213ENST00000461743 TMEM97Q5BJF2 176 aa8.08□□□□□ -1.12
VPS52-213ENST00000461743 BAGE3Q86Y29 109 aa8.08□□□□□ -1.12
VPS52-213ENST00000461743 GTSF1Q8WW33 167 aa8.08□□□□□ -1.12
VPS52-213ENST00000461743 BORCS7Q96B45 105 aa8.08□□□□□ -1.12
VPS52-213ENST00000461743 GNB1LQ9BYB4 327 aa8.08□□□□□ -1.12
VPS52-213ENST00000461743 BIRC6Q9NR09 4857 aa8.08□□□□□ -1.12
VPS52-213ENST00000461743 PPBPP02775 128 aa8.07□□□□□ -1.12
VPS52-213ENST00000461743 PTTG1IPP53801 180 aa8.07□□□□□ -1.12
VPS52-213ENST00000461743 UBE2V1Q13404 147 aa8.07□□□□□ -1.12
VPS52-213ENST00000461743 SMIM15Q7Z3B0 74 aa8.07□□□□□ -1.12
VPS52-213ENST00000461743 NFE4Q86UQ8 179 aa8.07□□□□□ -1.12
VPS52-213ENST00000461743 NEXN-AS1Q8NBZ9 246 aa8.07□□□□□ -1.12
VPS52-213ENST00000461743 DNAJC30Q96LL9 226 aa8.07□□□□□ -1.12
VPS52-213ENST00000461743 MSRB1Q9NZV6 116 aa8.07□□□□□ -1.12
VPS52-213ENST00000461743 LAMTOR2Q9Y2Q5 125 aa8.07□□□□□ -1.12
VPS52-213ENST00000461743 DNAH11Q96DT5 4516 aa8.07□□□□□ -1.12
VPS52-213ENST00000461743 MGPP08493 103 aa8.06□□□□□ -1.12
VPS52-213ENST00000461743 LAGE3Q14657 143 aa8.06□□□□□ -1.12
VPS52-213ENST00000461743 TWIST1Q15672 202 aa8.06□□□□□ -1.12
VPS52-213ENST00000461743 DAZ4Q86SG3 579 aaKnown RBP8.06□□□□□ -1.12
VPS52-213ENST00000461743 CHCHD7Q9BUK0 85 aa8.06□□□□□ -1.12
VPS52-213ENST00000461743 DAZ3Q9NR90 486 aaKnown RBP8.06□□□□□ -1.12
VPS52-213ENST00000461743 COX11Q9Y6N1 276 aa8.06□□□□□ -1.12
VPS52-213ENST00000461743 V9GYV3 84 aa8.06□□□□□ -1.12
VPS52-213ENST00000461743 A0A1B0GUT8 65 aa8.05□□□□□ -1.12
VPS52-213ENST00000461743 A0A1B0GVY2 172 aa8.05□□□□□ -1.12
VPS52-213ENST00000461743 HIGD1CA8MV81 97 aa8.05□□□□□ -1.12
VPS52-213ENST00000461743 M0QY20 66 aa8.05□□□□□ -1.12
VPS52-213ENST00000461743 CCL25O15444 150 aa8.05□□□□□ -1.12
VPS52-213ENST00000461743 KRTDAPP60985 99 aa8.05□□□□□ -1.12
VPS52-213ENST00000461743 PMCHL1Q16048 86 aa8.05□□□□□ -1.12
VPS52-213ENST00000461743 SUMO4Q6EEV6 95 aa8.05□□□□□ -1.12
VPS52-213ENST00000461743 Q6ZN92 141 aa8.05□□□□□ -1.12
VPS52-213ENST00000461743 STPG4Q8N801 248 aa8.05□□□□□ -1.12
VPS52-213ENST00000461743 Q9UF83 564 aa8.05□□□□□ -1.12
VPS52-213ENST00000461743 RASL11AQ6T310 242 aa8.04□□□□□ -1.12
VPS52-213ENST00000461743 PGLYRP4Q96LB8 373 aa8.04□□□□□ -1.12
VPS52-213ENST00000461743 ALKBH7Q9BT30 221 aaPredicted RBP8.04□□□□□ -1.12
VPS52-213ENST00000461743 NAT8BQ9UHF3 227 aa8.04□□□□□ -1.12
VPS52-213ENST00000461743 HLA-DQA1P01909 254 aa8.03□□□□□ -1.12
VPS52-213ENST00000461743 AMTP48728 403 aa8.03□□□□□ -1.12
VPS52-213ENST00000461743 Q6ZRN7 208 aaPredicted RBP8.03□□□□□ -1.12
VPS52-213ENST00000461743 TNFRSF18Q9Y5U5 241 aa8.03□□□□□ -1.12
VPS52-213ENST00000461743 TRBV6-8A0A0A6YYG3 113 aa8.02□□□□□ -1.13
VPS52-213ENST00000461743 A0A1B0GW15 77 aa8.02□□□□□ -1.13
VPS52-213ENST00000461743 SMIM27A0A1W2PRY6 76 aa8.02□□□□□ -1.13
VPS52-213ENST00000461743 IBA57-AS1B1ANH7 110 aa8.02□□□□□ -1.13
VPS52-213ENST00000461743 RIGQ13278 110 aa8.02□□□□□ -1.13
VPS52-213ENST00000461743 TMEM136Q6ZRR5 245 aa8.02□□□□□ -1.13
VPS52-213ENST00000461743 TMEM191AQ9H0A3 160 aa8.02□□□□□ -1.13
VPS52-213ENST00000461743 DYNC1H1Q14204 4646 aaKnown RBP8.02□□□□□ -1.13
VPS52-213ENST00000461743 C3orf79P0CE67 100 aa8.01□□□□□ -1.13
VPS52-213ENST00000461743 NIT1Q86X76 327 aa8.01□□□□□ -1.13
VPS52-213ENST00000461743 NUP35Q8NFH5 326 aa8.01□□□□□ -1.13
VPS52-213ENST00000461743 TRBV25-1A0A075B6N4 114 aa8□□□□□ -1.13
VPS52-213ENST00000461743 PMCHP20382 165 aa8□□□□□ -1.13
VPS52-213ENST00000461743 TNP2Q05952 138 aa8□□□□□ -1.13
VPS52-213ENST00000461743 A0A087WX48 190 aa7.99□□□□□ -1.13
VPS52-213ENST00000461743 TRAV8-3A0A0A6YYJ7 113 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms