RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 AMTP48728 403 aa7.37□□□□□ -1.23
USP4-204ENST00000416417 FOXA3P55318 350 aaPredicted RBP7.37□□□□□ -1.23
USP4-204ENST00000416417 MEF2BQ02080 365 aaPredicted RBP7.37□□□□□ -1.23
USP4-204ENST00000416417 RNASE7Q9H1E1 156 aaKnown RBP7.37□□□□□ -1.23
USP4-204ENST00000416417 IGHV3-64A0A075B6Q5 118 aa7.36□□□□□ -1.23
USP4-204ENST00000416417 A0A1B0GUV1 79 aa7.36□□□□□ -1.23
USP4-204ENST00000416417 F2Z2F3 143 aa7.36□□□□□ -1.23
USP4-204ENST00000416417 TRGC1P0CF51 173 aa7.36□□□□□ -1.23
USP4-204ENST00000416417 SULT1A2P50226 295 aa7.36□□□□□ -1.23
USP4-204ENST00000416417 CNBPP62633 177 aaKnown RBP7.36□□□□□ -1.23
USP4-204ENST00000416417 COTL1Q14019 142 aa7.36□□□□□ -1.23
USP4-204ENST00000416417 TWIST1Q15672 202 aa7.36□□□□□ -1.23
USP4-204ENST00000416417 HIGD2BQ4VC39 106 aa7.36□□□□□ -1.23
USP4-204ENST00000416417 GATD1Q8NB37 220 aa7.36□□□□□ -1.23
USP4-204ENST00000416417 RPL39LQ96EH5 51 aaKnown RBP7.36□□□□□ -1.23
USP4-204ENST00000416417 A0A087WYN8 130 aa7.35□□□□□ -1.23
USP4-204ENST00000416417 TRAV8-4A0A0B4J246 113 aa7.35□□□□□ -1.23
USP4-204ENST00000416417 XKRY2A2RUG3 117 aa7.35□□□□□ -1.23
USP4-204ENST00000416417 K7EN84 100 aa7.35□□□□□ -1.23
USP4-204ENST00000416417 PDE6DO43924 150 aa7.35□□□□□ -1.23
USP4-204ENST00000416417 MT1HL1P0DM35 61 aa7.35□□□□□ -1.23
USP4-204ENST00000416417 BCL2P10415 239 aa7.35□□□□□ -1.23
USP4-204ENST00000416417 Q6ZNX1 250 aa7.35□□□□□ -1.23
USP4-204ENST00000416417 C15orf56Q8N910 161 aa7.35□□□□□ -1.23
USP4-204ENST00000416417 PGLYRP4Q96LB8 373 aa7.35□□□□□ -1.23
USP4-204ENST00000416417 AP5S1Q9NUS5 200 aa7.35□□□□□ -1.23
USP4-204ENST00000416417 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.34□□□□□ -1.23
USP4-204ENST00000416417 IGKV2-29A2NJV5 120 aaPredicted RBP7.34□□□□□ -1.23
USP4-204ENST00000416417 CTRLP40313 264 aa7.34□□□□□ -1.23
USP4-204ENST00000416417 CIRBPQ14011 172 aaKnown RBP7.34□□□□□ -1.23
USP4-204ENST00000416417 C9orf62Q8N4C0 152 aa7.34□□□□□ -1.23
USP4-204ENST00000416417 TEX46H3BTG2 121 aa7.33□□□□□ -1.24
USP4-204ENST00000416417 WDR73Q6P4I2 378 aa7.33□□□□□ -1.24
USP4-204ENST00000416417 OCC1Q8TAD7 63 aa7.33□□□□□ -1.24
USP4-204ENST00000416417 SPACA4Q8TDM5 124 aa7.33□□□□□ -1.24
USP4-204ENST00000416417 SMIM12Q96EX1 92 aa7.33□□□□□ -1.24
USP4-204ENST00000416417 RPP21Q9H633 154 aaKnown RBP7.33□□□□□ -1.24
USP4-204ENST00000416417 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.32□□□□□ -1.24
USP4-204ENST00000416417 COX6A2Q02221 97 aa7.32□□□□□ -1.24
USP4-204ENST00000416417 GTSF1Q8WW33 167 aa7.32□□□□□ -1.24
USP4-204ENST00000416417 IGKV2-24A0A0C4DH68 120 aa7.32□□□□□ -1.24
USP4-204ENST00000416417 PHOX2AO14813 284 aa7.32□□□□□ -1.24
USP4-204ENST00000416417 GAS8-AS1O95177 125 aa7.32□□□□□ -1.24
USP4-204ENST00000416417 ODF1Q14990 250 aa7.32□□□□□ -1.24
USP4-204ENST00000416417 AMMECR1LQ6DCA0 310 aa7.32□□□□□ -1.24
USP4-204ENST00000416417 EIF5AL1Q6IS14 154 aaKnown RBP7.32□□□□□ -1.24
USP4-204ENST00000416417 RNASEKQ6P5S7 137 aaKnown RBP7.32□□□□□ -1.24
USP4-204ENST00000416417 PRSS3P2Q8NHM4 247 aa7.32□□□□□ -1.24
USP4-204ENST00000416417 CHCHD10Q8WYQ3 142 aaPredicted RBP7.32□□□□□ -1.24
USP4-204ENST00000416417 MAJINQ3KP22 176 aa7.31□□□□□ -1.24
USP4-204ENST00000416417 LYPD6BQ8NI32 183 aa7.31□□□□□ -1.24
USP4-204ENST00000416417 LINC00526Q96FQ7 95 aa7.31□□□□□ -1.24
USP4-204ENST00000416417 BIN3Q9NQY0 253 aa7.31□□□□□ -1.24
USP4-204ENST00000416417 CNFNQ9BYD5 112 aa7.3□□□□□ -1.24
USP4-204ENST00000416417 APCSP02743 223 aa7.29□□□□□ -1.24
USP4-204ENST00000416417 FGF6P10767 208 aa7.29□□□□□ -1.24
USP4-204ENST00000416417 RPS10P46783 165 aaKnown RBP7.29□□□□□ -1.24
USP4-204ENST00000416417 CEBPGP53567 150 aa7.29□□□□□ -1.24
USP4-204ENST00000416417 Q6ZRU5 148 aa7.29□□□□□ -1.24
USP4-204ENST00000416417 SLC51BQ86UW2 128 aa7.29□□□□□ -1.24
USP4-204ENST00000416417 PLAC8Q9NZF1 115 aa7.29□□□□□ -1.24
USP4-204ENST00000416417 FAM231BA6NCW3 169 aa7.28□□□□□ -1.24
USP4-204ENST00000416417 SDHAF1A6NFY7 115 aa7.28□□□□□ -1.24
USP4-204ENST00000416417 GATCO43716 136 aaKnown RBP7.28□□□□□ -1.24
USP4-204ENST00000416417 XCL1P47992 114 aa7.28□□□□□ -1.24
USP4-204ENST00000416417 FOXI1Q12951 378 aa7.28□□□□□ -1.24
USP4-204ENST00000416417 CFAP161Q6P656 301 aa7.28□□□□□ -1.24
USP4-204ENST00000416417 RNF185Q96GF1 192 aa7.28□□□□□ -1.24
USP4-204ENST00000416417 A0A096LNI7 61 aa7.27□□□□□ -1.25
USP4-204ENST00000416417 NDUFS6O75380 124 aaKnown RBP7.27□□□□□ -1.25
USP4-204ENST00000416417 PMCHP20382 165 aa7.27□□□□□ -1.25
USP4-204ENST00000416417 TCTE3Q8IZS6 198 aa7.27□□□□□ -1.25
USP4-204ENST00000416417 STPG4Q8N801 248 aa7.27□□□□□ -1.25
USP4-204ENST00000416417 CCL25O15444 150 aa7.27□□□□□ -1.25
USP4-204ENST00000416417 ALKAL2Q6UX46 152 aa7.27□□□□□ -1.25
USP4-204ENST00000416417 SMIM15Q7Z3B0 74 aa7.27□□□□□ -1.25
USP4-204ENST00000416417 C7orf33Q8WU49 177 aa7.27□□□□□ -1.25
USP4-204ENST00000416417 TMEM242Q9NWH2 141 aa7.27□□□□□ -1.25
USP4-204ENST00000416417 GVQW2A0A096LPI5 108 aaPredicted RBP7.26□□□□□ -1.25
USP4-204ENST00000416417 NCR2O95944 276 aa7.26□□□□□ -1.25
USP4-204ENST00000416417 TSHBP01222 138 aa7.26□□□□□ -1.25
USP4-204ENST00000416417 LINC00959A0A1B0GUT2 108 aa7.25□□□□□ -1.25
USP4-204ENST00000416417 I3L3M4 83 aa7.25□□□□□ -1.25
USP4-204ENST00000416417 OR5A1Q8NGJ0 315 aa7.25□□□□□ -1.25
USP4-204ENST00000416417 A8MWL6 223 aa7.24□□□□□ -1.25
USP4-204ENST00000416417 SMKR1H3BMG3 65 aa7.24□□□□□ -1.25
USP4-204ENST00000416417 TAGLN2P37802 199 aaKnown RBP7.24□□□□□ -1.25
USP4-204ENST00000416417 PRR3P79522 188 aaKnown RBP7.24□□□□□ -1.25
USP4-204ENST00000416417 TMEM101Q96IK0 257 aa7.24□□□□□ -1.25
USP4-204ENST00000416417 ST20Q9HBF5 79 aa7.24□□□□□ -1.25
USP4-204ENST00000416417 hCG_2014768A0A024R1R8 64 aa7.23□□□□□ -1.25
USP4-204ENST00000416417 H7C423 109 aa7.23□□□□□ -1.25
USP4-204ENST00000416417 ESDP10768 282 aa7.23□□□□□ -1.25
USP4-204ENST00000416417 FAM231DQ6ZW35 169 aa7.23□□□□□ -1.25
USP4-204ENST00000416417 BTF3L4Q96K17 158 aa7.23□□□□□ -1.25
USP4-204ENST00000416417 TRBV6-5A0A0K0K1A5 114 aa7.22□□□□□ -1.25
USP4-204ENST00000416417 TMEM250H0YL14 139 aa7.22□□□□□ -1.25
USP4-204ENST00000416417 RNASE13Q5GAN3 156 aaKnown RBP7.22□□□□□ -1.25
USP4-204ENST00000416417 TEX261Q6UWH6 196 aa7.22□□□□□ -1.25
USP4-204ENST00000416417 AMN1Q8IY45 258 aa7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 102.9 ms