RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 S100A7L2Q5SY68 101 aa2.39□□□□□ -2.03
VPS54-204ENST00000416400 CHCHD2P9Q5T1J5 151 aaPredicted RBP2.39□□□□□ -2.03
VPS54-204ENST00000416400 LYZL1Q6UWQ5 148 aa2.39□□□□□ -2.03
VPS54-204ENST00000416400 Q86TA4 180 aa2.39□□□□□ -2.03
VPS54-204ENST00000416400 SERP2Q8N6R1 65 aa2.39□□□□□ -2.03
VPS54-204ENST00000416400 TMEM141Q96I45 108 aa2.39□□□□□ -2.03
VPS54-204ENST00000416400 SCGB3A1Q96QR1 104 aa2.39□□□□□ -2.03
VPS54-204ENST00000416400 TM2D3Q9BRN9 247 aa2.39□□□□□ -2.03
VPS54-204ENST00000416400 CNFNQ9BYD5 112 aa2.39□□□□□ -2.03
VPS54-204ENST00000416400 AGPAT4-IT1Q9H0P7 198 aa2.39□□□□□ -2.03
VPS54-204ENST00000416400 MRPL35Q9NZE8 188 aaKnown RBP2.39□□□□□ -2.03
VPS54-204ENST00000416400 PLXNA4Q9HCM2 1894 aa2.39□□□□□ -2.03
VPS54-204ENST00000416400 PRR14LQ5THK1 2151 aa2.39□□□□□ -2.03
VPS54-204ENST00000416400 PTPRDP23468 1912 aa2.38□□□□□ -2.03
VPS54-204ENST00000416400 DENND4CQ5VZ89 1909 aa2.38□□□□□ -2.03
VPS54-204ENST00000416400 PLXNB2O15031 1838 aa2.38□□□□□ -2.03
VPS54-204ENST00000416400 TRAV12-2A0A075B6T6 113 aa2.38□□□□□ -2.03
VPS54-204ENST00000416400 IGKV2D-26A0A0A0MRZ7 120 aa2.38□□□□□ -2.03
VPS54-204ENST00000416400 FAM236AA0A1B0GUQ0 79 aa2.38□□□□□ -2.03
VPS54-204ENST00000416400 FAM236BA0A1B0GV22 79 aa2.38□□□□□ -2.03
VPS54-204ENST00000416400 TINCRA0A1B0GVN0 87 aa2.38□□□□□ -2.03
VPS54-204ENST00000416400 NDUFA3O95167 84 aa2.38□□□□□ -2.03
VPS54-204ENST00000416400 IGLV6-57P01721 117 aa2.38□□□□□ -2.03
VPS54-204ENST00000416400 IGHV3-33P01772 117 aa2.38□□□□□ -2.03
VPS54-204ENST00000416400 LGALS3P17931 250 aaKnown RBP2.38□□□□□ -2.03
VPS54-204ENST00000416400 SPINK9Q5DT21 86 aa2.38□□□□□ -2.03
VPS54-204ENST00000416400 GOLT1AQ6ZVE7 132 aa2.38□□□□□ -2.03
VPS54-204ENST00000416400 C5orf38Q86SI9 138 aa2.38□□□□□ -2.03
VPS54-204ENST00000416400 DAND5Q8N907 189 aa2.38□□□□□ -2.03
VPS54-204ENST00000416400 NDUFA4L2Q9NRX3 87 aa2.38□□□□□ -2.03
VPS54-204ENST00000416400 RPUSD1Q9UJJ7 312 aaKnown RBP2.38□□□□□ -2.03
VPS54-204ENST00000416400 SERP1Q9Y6X1 66 aa2.38□□□□□ -2.03
VPS54-204ENST00000416400 SHANK1Q9Y566 2161 aa2.37□□□□□ -2.03
VPS54-204ENST00000416400 MGAMO43451 1857 aa2.37□□□□□ -2.03
VPS54-204ENST00000416400 PLXNA2O75051 1894 aa2.37□□□□□ -2.03
VPS54-204ENST00000416400 NLRC5Q86WI3 1866 aa2.37□□□□□ -2.03
VPS54-204ENST00000416400 GREB1Q4ZG55 1949 aa2.37□□□□□ -2.03
VPS54-204ENST00000416400 PLXND1Q9Y4D7 1925 aa2.37□□□□□ -2.03
VPS54-204ENST00000416400 TMSB15BA0A087X1C1 80 aa2.37□□□□□ -2.03
VPS54-204ENST00000416400 A0A0J9YX75 114 aa2.37□□□□□ -2.03
VPS54-204ENST00000416400 A0A0J9YY99 117 aa2.37□□□□□ -2.03
VPS54-204ENST00000416400 SPTY2D1-AS1A0A0U1RR47 76 aa2.37□□□□□ -2.03
VPS54-204ENST00000416400 LOC107984640A0A0U1RRK4 108 aa2.37□□□□□ -2.03
VPS54-204ENST00000416400 C11orf86A6NJI1 115 aa2.37□□□□□ -2.03
VPS54-204ENST00000416400 IQCF6A8MYZ5 107 aa2.37□□□□□ -2.03
VPS54-204ENST00000416400 OOSP1A8MZH6 123 aa2.37□□□□□ -2.03
VPS54-204ENST00000416400 NDUFC1O43677 76 aa2.37□□□□□ -2.03
VPS54-204ENST00000416400 SH2D1AO60880 128 aa2.37□□□□□ -2.03
VPS54-204ENST00000416400 IGHV3-30P01768 117 aa2.37□□□□□ -2.03
VPS54-204ENST00000416400 IGHV3-30-5P0DP03 117 aa2.37□□□□□ -2.03
VPS54-204ENST00000416400 ATP5EP56381 51 aaPredicted RBP2.37□□□□□ -2.03
VPS54-204ENST00000416400 NPC2P61916 151 aa2.37□□□□□ -2.03
VPS54-204ENST00000416400 DEFB110Q30KQ9 67 aa2.37□□□□□ -2.03
VPS54-204ENST00000416400 VMA21Q3ZAQ7 101 aa2.37□□□□□ -2.03
VPS54-204ENST00000416400 PATE2Q6UY27 113 aa2.37□□□□□ -2.03
VPS54-204ENST00000416400 LINC00322Q6ZN03 302 aaPredicted RBP2.37□□□□□ -2.03
VPS54-204ENST00000416400 CCL4L1Q8NHW4 92 aa2.37□□□□□ -2.03
VPS54-204ENST00000416400 TMEM167AQ8TBQ9 72 aa2.37□□□□□ -2.03
VPS54-204ENST00000416400 TOMM6Q96B49 74 aa2.37□□□□□ -2.03
VPS54-204ENST00000416400 SLC50A1Q9BRV3 221 aa2.37□□□□□ -2.03
VPS54-204ENST00000416400 TRPM6Q9BX84 2022 aa2.37□□□□□ -2.03
VPS54-204ENST00000416400 TNRC6AQ8NDV7 1962 aaKnown RBP2.36□□□□□ -2.03
VPS54-204ENST00000416400 CACNA1CQ13936 2221 aa2.36□□□□□ -2.03
VPS54-204ENST00000416400 TRBV19A0A075B6N1 114 aa2.36□□□□□ -2.03
VPS54-204ENST00000416400 TRAV3A0A0B4J244 114 aa2.36□□□□□ -2.03
VPS54-204ENST00000416400 A0A0J9YW62 118 aa2.36□□□□□ -2.03
VPS54-204ENST00000416400 A0A1W2PNN7 141 aa2.36□□□□□ -2.03
VPS54-204ENST00000416400 hADV29S1A0JD25 119 aa2.36□□□□□ -2.03
VPS54-204ENST00000416400 RBAKDNA6NC62 111 aa2.36□□□□□ -2.03
VPS54-204ENST00000416400 SDHAF1A6NFY7 115 aa2.36□□□□□ -2.03
VPS54-204ENST00000416400 M0R381 172 aa2.36□□□□□ -2.03
VPS54-204ENST00000416400 M0R3E3 92 aa2.36□□□□□ -2.03
VPS54-204ENST00000416400 CD24P25063 80 aa2.36□□□□□ -2.03
VPS54-204ENST00000416400 CIRBPQ14011 172 aaKnown RBP2.36□□□□□ -2.03
VPS54-204ENST00000416400 FAM201AQ5SY85 155 aa2.36□□□□□ -2.03
VPS54-204ENST00000416400 LCE1CQ5T751 118 aa2.36□□□□□ -2.03
VPS54-204ENST00000416400 LCE1BQ5T7P3 118 aa2.36□□□□□ -2.03
VPS54-204ENST00000416400 TMEM263Q8WUH6 116 aaKnown RBP2.36□□□□□ -2.03
VPS54-204ENST00000416400 DPH3P1Q9H4G8 78 aa2.36□□□□□ -2.03
VPS54-204ENST00000416400 LINC00527Q9UJ94 153 aa2.36□□□□□ -2.03
VPS54-204ENST00000416400 PHLDA3Q9Y5J5 127 aa2.36□□□□□ -2.03
VPS54-204ENST00000416400 NUP210LQ5VU65 1888 aa2.36□□□□□ -2.03
VPS54-204ENST00000416400 HEATR5BQ9P2D3 2071 aa2.36□□□□□ -2.03
VPS54-204ENST00000416400 NUMA1Q14980 2115 aa2.36□□□□□ -2.03
VPS54-204ENST00000416400 CACNA1DQ01668 2161 aa2.36□□□□□ -2.03
VPS54-204ENST00000416400 NUP210Q8TEM1 1887 aaPredicted RBP2.35□□□□□ -2.03
VPS54-204ENST00000416400 TRBV7-1A0A0A6YYK4 115 aa2.35□□□□□ -2.03
VPS54-204ENST00000416400 TRGV5A0A0B4J1U4 118 aa2.35□□□□□ -2.03
VPS54-204ENST00000416400 TRBV10-3A0A0K0K1G6 114 aa2.35□□□□□ -2.03
VPS54-204ENST00000416400 TEX49A0A1B0GTD5 131 aa2.35□□□□□ -2.03
VPS54-204ENST00000416400 KNCNA6PVL3 124 aa2.35□□□□□ -2.03
VPS54-204ENST00000416400 LST1O00453 97 aa2.35□□□□□ -2.03
VPS54-204ENST00000416400 LEPROTO15243 131 aa2.35□□□□□ -2.03
VPS54-204ENST00000416400 COX6B1P14854 86 aa2.35□□□□□ -2.03
VPS54-204ENST00000416400 C4orf26Q17RF5 130 aa2.35□□□□□ -2.03
VPS54-204ENST00000416400 C1orf195Q5TG92 126 aa2.35□□□□□ -2.03
VPS54-204ENST00000416400 ATP5EP2Q5VTU8 51 aa2.35□□□□□ -2.03
VPS54-204ENST00000416400 HRCT1Q6UXD1 115 aa2.35□□□□□ -2.03
VPS54-204ENST00000416400 SDIM1Q6ZPB5 146 aa2.35□□□□□ -2.03
VPS54-204ENST00000416400 SCN3AQ9NY46 2000 aa2.35□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms