RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 AMTP48728 403 aa14.5□□□□□ -0.09
CLN3-207ENST00000395653 Q8N976 141 aa14.5□□□□□ -0.09
CLN3-207ENST00000395653 UBE2WQ96B02 151 aa14.5□□□□□ -0.09
CLN3-207ENST00000395653 RBX1P62877 108 aa14.49□□□□□ -0.09
CLN3-207ENST00000395653 MRPL51Q4U2R6 128 aaKnown RBP14.49□□□□□ -0.09
CLN3-207ENST00000395653 DEFB104AQ8WTQ1 72 aa14.49□□□□□ -0.09
CLN3-207ENST00000395653 RMI2Q96E14 147 aa14.49□□□□□ -0.09
CLN3-207ENST00000395653 TMEM70Q9BUB7 260 aa14.49□□□□□ -0.09
CLN3-207ENST00000395653 COX11Q9Y6N1 276 aa14.49□□□□□ -0.09
CLN3-207ENST00000395653 I3L3M4 83 aa14.49□□□□□ -0.09
CLN3-207ENST00000395653 Q0VG73 95 aa14.49□□□□□ -0.09
CLN3-207ENST00000395653 SPATA12Q7Z6I5 190 aa14.49□□□□□ -0.09
CLN3-207ENST00000395653 SMKR1H3BMG3 65 aa14.48□□□□□ -0.09
CLN3-207ENST00000395653 ANGP03950 147 aaKnown RBP14.48□□□□□ -0.09
CLN3-207ENST00000395653 POLR2KP53803 58 aaKnown RBP14.48□□□□□ -0.09
CLN3-207ENST00000395653 A0A1B0GUV1 79 aa14.47□□□□□ -0.09
CLN3-207ENST00000395653 UBE2L6O14933 153 aa14.47□□□□□ -0.09
CLN3-207ENST00000395653 CRPP02741 224 aa14.47□□□□□ -0.09
CLN3-207ENST00000395653 APCSP02743 223 aa14.47□□□□□ -0.09
CLN3-207ENST00000395653 PMCHP20382 165 aa14.47□□□□□ -0.09
CLN3-207ENST00000395653 C10orf91Q5T1B1 145 aa14.47□□□□□ -0.09
CLN3-207ENST00000395653 NRACQ8N912 160 aa14.47□□□□□ -0.09
CLN3-207ENST00000395653 CTDSP1Q9GZU7 261 aa14.47□□□□□ -0.09
CLN3-207ENST00000395653 TRBV27A0A0K0K1C4 114 aa14.46□□□□□ -0.09
CLN3-207ENST00000395653 LRCOL1A6NCL2 159 aa14.46□□□□□ -0.09
CLN3-207ENST00000395653 KRTAP10-2P60368 255 aa14.46□□□□□ -0.09
CLN3-207ENST00000395653 IMMP2LQ96T52 175 aa14.46□□□□□ -0.09
CLN3-207ENST00000395653 ENHOQ6UWT2 76 aa14.45□□□□□ -0.1
CLN3-207ENST00000395653 PRR34Q9NV39 138 aa14.45□□□□□ -0.1
CLN3-207ENST00000395653 IGKV2D-24A0A075B6R9 120 aa14.44□□□□□ -0.1
CLN3-207ENST00000395653 C16orf90A8MZG2 172 aa14.44□□□□□ -0.1
CLN3-207ENST00000395653 CKS2P33552 79 aa14.44□□□□□ -0.1
CLN3-207ENST00000395653 SUMO2P61956 95 aaKnown RBP14.44□□□□□ -0.1
CLN3-207ENST00000395653 BTF3L4Q96K17 158 aa14.44□□□□□ -0.1
CLN3-207ENST00000395653 CARHSP1Q9Y2V2 147 aaKnown RBP14.44□□□□□ -0.1
CLN3-207ENST00000395653 DNAH5Q8TE73 4624 aa14.44□□□□□ -0.1
CLN3-207ENST00000395653 TRBV24-1A0A075B6N3 115 aa14.43□□□□□ -0.1
CLN3-207ENST00000395653 H7C423 109 aa14.43□□□□□ -0.1
CLN3-207ENST00000395653 TSHBP01222 138 aa14.43□□□□□ -0.1
CLN3-207ENST00000395653 MIAQ16674 131 aa14.43□□□□□ -0.1
CLN3-207ENST00000395653 VCYO14598 125 aa14.42□□□□□ -0.1
CLN3-207ENST00000395653 LINC00269Q8N2A0 174 aa14.42□□□□□ -0.1
CLN3-207ENST00000395653 C20orf203Q8NBC4 194 aa14.42□□□□□ -0.1
CLN3-207ENST00000395653 C1orf43Q9BWL3 253 aa14.42□□□□□ -0.1
CLN3-207ENST00000395653 TMEM242Q9NWH2 141 aa14.42□□□□□ -0.1
CLN3-207ENST00000395653 PGPEP1Q9NXJ5 209 aa14.42□□□□□ -0.1
CLN3-207ENST00000395653 D6R8Y8 96 aa14.41□□□□□ -0.1
CLN3-207ENST00000395653 PPBPP02775 128 aa14.41□□□□□ -0.1
CLN3-207ENST00000395653 CDPF1Q6NVV7 123 aa14.41□□□□□ -0.1
CLN3-207ENST00000395653 C20orf78Q9BR46 151 aa14.41□□□□□ -0.1
CLN3-207ENST00000395653 IGLV4-60A0A075B6I1 120 aa14.41□□□□□ -0.1
CLN3-207ENST00000395653 ESDP10768 282 aa14.41□□□□□ -0.1
CLN3-207ENST00000395653 MAPKAPK5-AS1Q8N8E1 139 aa14.41□□□□□ -0.1
CLN3-207ENST00000395653 LRP1BQ9NZR2 4599 aa14.41□□□□□ -0.1
CLN3-207ENST00000395653 IGKV2D-29A0A075B6S2 120 aaPredicted RBP14.4□□□□□ -0.1
CLN3-207ENST00000395653 IGKV2-29A2NJV5 120 aaPredicted RBP14.4□□□□□ -0.1
CLN3-207ENST00000395653 TNFRSF6BO95407 300 aa14.4□□□□□ -0.1
CLN3-207ENST00000395653 RPL32P62910 135 aaKnown RBP14.4□□□□□ -0.1
CLN3-207ENST00000395653 TRAV9-1A0A075B6T8 112 aa14.39□□□□□ -0.11
CLN3-207ENST00000395653 PHOX2AO14813 284 aa14.39□□□□□ -0.11
CLN3-207ENST00000395653 REG3AQ06141 175 aa14.39□□□□□ -0.11
CLN3-207ENST00000395653 CLPSL2Q6UWE3 100 aa14.39□□□□□ -0.11
CLN3-207ENST00000395653 Q8N814 137 aa14.39□□□□□ -0.11
CLN3-207ENST00000395653 KIR2DL4Q99706 377 aa14.39□□□□□ -0.11
CLN3-207ENST00000395653 RHEBQ15382 184 aa14.38□□□□□ -0.11
CLN3-207ENST00000395653 AMMECR1LQ6DCA0 310 aa14.38□□□□□ -0.11
CLN3-207ENST00000395653 ORMDL3Q8N138 153 aa14.38□□□□□ -0.11
CLN3-207ENST00000395653 C7orf77A4D0Y5 90 aa14.37□□□□□ -0.11
CLN3-207ENST00000395653 FGF6P10767 208 aa14.37□□□□□ -0.11
CLN3-207ENST00000395653 ZNF25P17030 456 aaPredicted RBP14.37□□□□□ -0.11
CLN3-207ENST00000395653 FCER1GP30273 86 aa14.37□□□□□ -0.11
CLN3-207ENST00000395653 TMEM136Q6ZRR5 245 aa14.37□□□□□ -0.11
CLN3-207ENST00000395653 CLRN3Q8NCR9 226 aa14.37□□□□□ -0.11
CLN3-207ENST00000395653 NPYP01303 97 aa14.36□□□□□ -0.11
CLN3-207ENST00000395653 WFDC2Q14508 124 aa14.36□□□□□ -0.11
CLN3-207ENST00000395653 RNASEKQ6P5S7 137 aaKnown RBP14.36□□□□□ -0.11
CLN3-207ENST00000395653 NTN5Q8WTR8 489 aaPredicted RBP14.36□□□□□ -0.11
CLN3-207ENST00000395653 BAALCQ8WXS3 180 aa14.36□□□□□ -0.11
CLN3-207ENST00000395653 KIAA1109Q2LD37 5005 aa14.36□□□□□ -0.11
CLN3-207ENST00000395653 TRAV8-4A0A0B4J246 113 aa14.35□□□□□ -0.11
CLN3-207ENST00000395653 S100PP25815 95 aa14.35□□□□□ -0.11
CLN3-207ENST00000395653 PRELID3AQ96N28 172 aa14.34□□□□□ -0.11
CLN3-207ENST00000395653 SMIM2Q9BVW6 85 aa14.34□□□□□ -0.11
CLN3-207ENST00000395653 LECT2O14960 151 aa14.33□□□□□ -0.11
CLN3-207ENST00000395653 TCAPO15273 167 aa14.33□□□□□ -0.11
CLN3-207ENST00000395653 FUSP35637 526 aaKnown RBP eCLIP14.33□□□□□ -0.11
CLN3-207ENST00000395653 LAMTOR2Q9Y2Q5 125 aa14.33□□□□□ -0.11
CLN3-207ENST00000395653 KRTAP26-1Q6PEX3 210 aa14.32□□□□□ -0.12
CLN3-207ENST00000395653 MRPL52Q86TS9 123 aaKnown RBP14.32□□□□□ -0.12
CLN3-207ENST00000395653 TMEM101Q96IK0 257 aa14.32□□□□□ -0.12
CLN3-207ENST00000395653 RPS10P5Q9NQ39 176 aa14.32□□□□□ -0.12
CLN3-207ENST00000395653 NDUFA5Q16718 116 aa14.32□□□□□ -0.12
CLN3-207ENST00000395653 IGLV5-52A0A0A0MRZ9 124 aa14.31□□□□□ -0.12
CLN3-207ENST00000395653 HLA-DQA1P01909 254 aa14.31□□□□□ -0.12
CLN3-207ENST00000395653 APOC3P02656 99 aa14.31□□□□□ -0.12
CLN3-207ENST00000395653 IGLV10-54A0A075B6I4 117 aa14.3□□□□□ -0.12
CLN3-207ENST00000395653 PRSS47A8MTI9 375 aa14.3□□□□□ -0.12
CLN3-207ENST00000395653 SMAGPQ0VAQ4 97 aa14.3□□□□□ -0.12
CLN3-207ENST00000395653 OR5A1Q8NGJ0 315 aa14.3□□□□□ -0.12
CLN3-207ENST00000395653 HERC2O95714 4834 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms