RNA–Protein interactions for RNA: ENST00000371817.7

COL5A1-201, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL5A1, Length 8,471 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-201ENST00000371817 DEFB112Q30KQ8 113 aa11.71□□□□□ -0.53
COL5A1-201ENST00000371817 IGHV3-30P01768 117 aa11.71□□□□□ -0.53
COL5A1-201ENST00000371817 IGHV3-30-5P0DP03 117 aa11.71□□□□□ -0.53
COL5A1-201ENST00000371817 CPAMD8Q8IZJ3 1885 aa11.71□□□□□ -0.53
COL5A1-201ENST00000371817 IGKV1-17P01599 117 aa11.71□□□□□ -0.54
COL5A1-201ENST00000371817 NEXN-AS1Q8NBZ9 246 aa11.71□□□□□ -0.54
COL5A1-201ENST00000371817 RAI1Q7Z5J4 1906 aaPredicted RBP11.7□□□□□ -0.54
COL5A1-201ENST00000371817 C3orf84H3BNL1 204 aa11.7□□□□□ -0.54
COL5A1-201ENST00000371817 IGLV2-23P01705 113 aa11.7□□□□□ -0.54
COL5A1-201ENST00000371817 PRR4Q16378 134 aa11.7□□□□□ -0.54
COL5A1-201ENST00000371817 EPOPA6NHQ4 379 aa11.7□□□□□ -0.54
COL5A1-201ENST00000371817 KAAG1Q9UBP8 84 aa11.7□□□□□ -0.54
COL5A1-201ENST00000371817 APRG1Q8IVJ8 170 aa11.7□□□□□ -0.54
COL5A1-201ENST00000371817 UFSP1Q6NVU6 142 aa11.69□□□□□ -0.54
COL5A1-201ENST00000371817 VPREB3Q9UKI3 123 aa11.69□□□□□ -0.54
COL5A1-201ENST00000371817 SOSTDC1Q6X4U4 206 aa11.69□□□□□ -0.54
COL5A1-201ENST00000371817 CCL24O00175 119 aa11.69□□□□□ -0.54
COL5A1-201ENST00000371817 SPART-AS1P0CW21 52 aa11.69□□□□□ -0.54
COL5A1-201ENST00000371817 TP73-AS1Q9UF72 201 aa11.69□□□□□ -0.54
COL5A1-201ENST00000371817 CCL18P55774 89 aa11.69□□□□□ -0.54
COL5A1-201ENST00000371817 LINC00308Q8TCZ7 52 aa11.69□□□□□ -0.54
COL5A1-201ENST00000371817 IGHV4-30-2A0A087WSY4 118 aa11.68□□□□□ -0.54
COL5A1-201ENST00000371817 PATE2Q6UY27 113 aa11.68□□□□□ -0.54
COL5A1-201ENST00000371817 LINC00526Q96FQ7 95 aa11.68□□□□□ -0.54
COL5A1-201ENST00000371817 IGLV11-55A0A075B6I3 123 aa11.68□□□□□ -0.54
COL5A1-201ENST00000371817 J3QLI3 93 aa11.68□□□□□ -0.54
COL5A1-201ENST00000371817 C1orf158Q8N1D5 194 aa11.68□□□□□ -0.54
COL5A1-201ENST00000371817 TMEM223A0PJW6 202 aa11.68□□□□□ -0.54
COL5A1-201ENST00000371817 C2orf91Q6ZV80 131 aa11.68□□□□□ -0.54
COL5A1-201ENST00000371817 PRO0628Q9UI54 55 aa11.67□□□□□ -0.54
COL5A1-201ENST00000371817 ACACBO00763 2458 aa11.67□□□□□ -0.54
COL5A1-201ENST00000371817 PROK2Q9HC23 129 aa11.67□□□□□ -0.54
COL5A1-201ENST00000371817 CSRP1P21291 193 aaKnown RBP11.67□□□□□ -0.54
COL5A1-201ENST00000371817 VWCEQ96DN2 955 aa11.67□□□□□ -0.54
COL5A1-201ENST00000371817 LST1O00453 97 aa11.67□□□□□ -0.54
COL5A1-201ENST00000371817 RSPO1Q2MKA7 263 aaPredicted RBP11.67□□□□□ -0.54
COL5A1-201ENST00000371817 LRCOL1A6NCL2 159 aa11.67□□□□□ -0.54
COL5A1-201ENST00000371817 HIVEP3Q5T1R4 2406 aa11.66□□□□□ -0.54
COL5A1-201ENST00000371817 LY6DQ14210 128 aa11.66□□□□□ -0.54
COL5A1-201ENST00000371817 C9orf85Q96MD7 179 aa11.66□□□□□ -0.54
COL5A1-201ENST00000371817 ZNF462Q96JM2 2506 aa11.66□□□□□ -0.54
COL5A1-201ENST00000371817 CTSGP08311 255 aa11.66□□□□□ -0.54
COL5A1-201ENST00000371817 WFDC10AQ9H1F0 79 aa11.66□□□□□ -0.54
COL5A1-201ENST00000371817 NRGNQ92686 78 aa11.65□□□□□ -0.54
COL5A1-201ENST00000371817 TRBV10-1A0A0K0K1A3 114 aa11.65□□□□□ -0.54
COL5A1-201ENST00000371817 IBA57-AS1B1ANH7 110 aa11.65□□□□□ -0.54
COL5A1-201ENST00000371817 H7C423 109 aa11.65□□□□□ -0.54
COL5A1-201ENST00000371817 HIVEP2P31629 2446 aa11.65□□□□□ -0.54
COL5A1-201ENST00000371817 EBI3Q14213 229 aa11.65□□□□□ -0.54
COL5A1-201ENST00000371817 Q6JHZ5 121 aa11.65□□□□□ -0.54
COL5A1-201ENST00000371817 KIR2DL5BQ8NHK3 375 aa11.65□□□□□ -0.54
COL5A1-201ENST00000371817 KLK12Q9UKR0 248 aa11.65□□□□□ -0.54
COL5A1-201ENST00000371817 RNF223E7ERA6 249 aa11.65□□□□□ -0.54
COL5A1-201ENST00000371817 PSPHP1O15172 72 aa11.65□□□□□ -0.54
COL5A1-201ENST00000371817 INSL3P51460 131 aa11.64□□□□□ -0.55
COL5A1-201ENST00000371817 FAM222AQ5U5X8 452 aa11.64□□□□□ -0.55
COL5A1-201ENST00000371817 MAPKAPK5-AS1Q8N8E1 139 aa11.64□□□□□ -0.55
COL5A1-201ENST00000371817 FAM30AQ9NZY2 134 aa11.64□□□□□ -0.55
COL5A1-201ENST00000371817 GDF5OSQ5U4N7 250 aa11.64□□□□□ -0.55
COL5A1-201ENST00000371817 ZFAND2AQ8N6M9 145 aa11.64□□□□□ -0.55
COL5A1-201ENST00000371817 IGLV1-44P01699 117 aa11.64□□□□□ -0.55
COL5A1-201ENST00000371817 PRAC2D3DTV9 90 aa11.63□□□□□ -0.55
COL5A1-201ENST00000371817 DEFB136Q30KP8 78 aa11.63□□□□□ -0.55
COL5A1-201ENST00000371817 CEMP1Q6PRD7 247 aaPredicted RBP11.63□□□□□ -0.55
COL5A1-201ENST00000371817 C17orf82Q86X59 251 aaPredicted RBP11.63□□□□□ -0.55
COL5A1-201ENST00000371817 PRYO14603 147 aa11.61□□□□□ -0.55
COL5A1-201ENST00000371817 F8P00451 2351 aa11.61□□□□□ -0.55
COL5A1-201ENST00000371817 TRBV6-5A0A0K0K1A5 114 aa11.61□□□□□ -0.55
COL5A1-201ENST00000371817 ZNF503-AS2A6NEH8 195 aa11.61□□□□□ -0.55
COL5A1-201ENST00000371817 IGHV7-81A0A0B4J1V7 117 aa11.61□□□□□ -0.55
COL5A1-201ENST00000371817 Q8N9W7 124 aa11.61□□□□□ -0.55
COL5A1-201ENST00000371817 LOC107984640A0A0U1RRK4 108 aa11.6□□□□□ -0.55
COL5A1-201ENST00000371817 C22orf34Q6ZV56 151 aa11.6□□□□□ -0.55
COL5A1-201ENST00000371817 TMEM105Q8N8V8 129 aa11.6□□□□□ -0.55
COL5A1-201ENST00000371817 SLURP1P55000 103 aa11.6□□□□□ -0.55
COL5A1-201ENST00000371817 HIGD2AQ9BW72 106 aa11.6□□□□□ -0.55
COL5A1-201ENST00000371817 SIRPDQ9H106 197 aa11.6□□□□□ -0.55
COL5A1-201ENST00000371817 CDKN2A-AS1Q9UH64 79 aa11.59□□□□□ -0.55
COL5A1-201ENST00000371817 RITA1Q96K30 269 aa11.59□□□□□ -0.55
COL5A1-201ENST00000371817 K7ENP7 123 aa11.59□□□□□ -0.55
COL5A1-201ENST00000371817 AJUBAQ96IF1 538 aa11.59□□□□□ -0.55
COL5A1-201ENST00000371817 YPEL4Q96NS1 127 aa11.59□□□□□ -0.55
COL5A1-201ENST00000371817 LINC00467Q9BRT7 94 aa11.58□□□□□ -0.56
COL5A1-201ENST00000371817 A8MZ25 164 aa11.58□□□□□ -0.56
COL5A1-201ENST00000371817 ZNF22P17026 224 aaPredicted RBP11.58□□□□□ -0.56
COL5A1-201ENST00000371817 WFDC13Q8IUB5 93 aa11.58□□□□□ -0.56
COL5A1-201ENST00000371817 NRACQ8N912 160 aa11.58□□□□□ -0.56
COL5A1-201ENST00000371817 RNF138Q8WVD3 245 aa11.58□□□□□ -0.56
COL5A1-201ENST00000371817 MAPK1IP1LQ8NDC0 245 aa11.57□□□□□ -0.56
COL5A1-201ENST00000371817 U3KQK5 164 aa11.57□□□□□ -0.56
COL5A1-201ENST00000371817 BDP1A6H8Y1 2624 aa11.57□□□□□ -0.56
COL5A1-201ENST00000371817 IGLV4-3A0A075B6K6 122 aa11.57□□□□□ -0.56
COL5A1-201ENST00000371817 C6orf99Q4VX62 202 aa11.56□□□□□ -0.56
COL5A1-201ENST00000371817 LINC00269Q8N2A0 174 aa11.56□□□□□ -0.56
COL5A1-201ENST00000371817 ESM1Q9NQ30 184 aa11.56□□□□□ -0.56
COL5A1-201ENST00000371817 LINC00322Q6ZN03 302 aaPredicted RBP11.56□□□□□ -0.56
COL5A1-201ENST00000371817 COL4A5P29400 1685 aa11.56□□□□□ -0.56
COL5A1-201ENST00000371817 C9orf66Q5T8R8 295 aa11.56□□□□□ -0.56
COL5A1-201ENST00000371817 Q8N976 141 aa11.56□□□□□ -0.56
COL5A1-201ENST00000371817 IGLV2-8P01709 118 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 107.8 ms