RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 Q8N976 141 aa11.32□□□□□ -0.6
CLN3-203ENST00000357806 DEFB104AQ8WTQ1 72 aa11.32□□□□□ -0.6
CLN3-203ENST00000357806 ST20Q9HBF5 79 aa11.32□□□□□ -0.6
CLN3-203ENST00000357806 GAS8-AS1O95177 125 aa11.32□□□□□ -0.6
CLN3-203ENST00000357806 KRTAP10-2P60368 255 aa11.32□□□□□ -0.6
CLN3-203ENST00000357806 RBX1P62877 108 aa11.32□□□□□ -0.6
CLN3-203ENST00000357806 FAM104BQ5XKR9 115 aa11.32□□□□□ -0.6
CLN3-203ENST00000357806 ATP5L2Q7Z4Y8 100 aa11.32□□□□□ -0.6
CLN3-203ENST00000357806 IGKV2D-24A0A075B6R9 120 aa11.31□□□□□ -0.6
CLN3-203ENST00000357806 A0A1B0GXF2 115 aa11.31□□□□□ -0.6
CLN3-203ENST00000357806 I3L3M4 83 aa11.31□□□□□ -0.6
CLN3-203ENST00000357806 PPP1R17O96001 155 aa11.31□□□□□ -0.6
CLN3-203ENST00000357806 APCSP02743 223 aa11.31□□□□□ -0.6
CLN3-203ENST00000357806 RPS10P46783 165 aaKnown RBP11.31□□□□□ -0.6
CLN3-203ENST00000357806 LRCOL1A6NCL2 159 aa11.3□□□□□ -0.6
CLN3-203ENST00000357806 PMCHP20382 165 aa11.3□□□□□ -0.6
CLN3-203ENST00000357806 MRPL51Q4U2R6 128 aaKnown RBP11.3□□□□□ -0.6
CLN3-203ENST00000357806 TMEM70Q9BUB7 260 aa11.3□□□□□ -0.6
CLN3-203ENST00000357806 SEC11CQ9BY50 192 aa11.3□□□□□ -0.6
CLN3-203ENST00000357806 DYNC1H1Q14204 4646 aaKnown RBP11.29□□□□□ -0.6
CLN3-203ENST00000357806 LINC00862A6NCI5 91 aa11.29□□□□□ -0.6
CLN3-203ENST00000357806 SMKR1H3BMG3 65 aa11.29□□□□□ -0.6
CLN3-203ENST00000357806 CDPF1Q6NVV7 123 aa11.29□□□□□ -0.6
CLN3-203ENST00000357806 C1orf43Q9BWL3 253 aa11.29□□□□□ -0.6
CLN3-203ENST00000357806 PGPEP1Q9NXJ5 209 aa11.29□□□□□ -0.6
CLN3-203ENST00000357806 A0A1B0GUV1 79 aa11.28□□□□□ -0.6
CLN3-203ENST00000357806 MIAQ16674 131 aa11.28□□□□□ -0.6
CLN3-203ENST00000357806 ENHOQ6UWT2 76 aa11.28□□□□□ -0.6
CLN3-203ENST00000357806 POLR2KP53803 58 aaKnown RBP11.27□□□□□ -0.6
CLN3-203ENST00000357806 CLPSL2Q6UWE3 100 aa11.27□□□□□ -0.6
CLN3-203ENST00000357806 NRACQ8N912 160 aa11.27□□□□□ -0.6
CLN3-203ENST00000357806 PRR34Q9NV39 138 aa11.27□□□□□ -0.6
CLN3-203ENST00000357806 TRBV27A0A0K0K1C4 114 aa11.26□□□□□ -0.61
CLN3-203ENST00000357806 H7C423 109 aa11.26□□□□□ -0.61
CLN3-203ENST00000357806 CKS2P33552 79 aa11.26□□□□□ -0.61
CLN3-203ENST00000357806 SUMO2P61956 95 aaKnown RBP11.26□□□□□ -0.61
CLN3-203ENST00000357806 LINC00269Q8N2A0 174 aa11.26□□□□□ -0.61
CLN3-203ENST00000357806 Q8N814 137 aa11.26□□□□□ -0.61
CLN3-203ENST00000357806 C20orf203Q8NBC4 194 aa11.26□□□□□ -0.61
CLN3-203ENST00000357806 TMEM242Q9NWH2 141 aa11.25□□□□□ -0.61
CLN3-203ENST00000357806 IGLV4-60A0A075B6I1 120 aa11.25□□□□□ -0.61
CLN3-203ENST00000357806 TSHBP01222 138 aa11.25□□□□□ -0.61
CLN3-203ENST00000357806 REG3AQ06141 175 aa11.25□□□□□ -0.61
CLN3-203ENST00000357806 AMMECR1LQ6DCA0 310 aa11.25□□□□□ -0.61
CLN3-203ENST00000357806 MAPKAPK5-AS1Q8N8E1 139 aa11.25□□□□□ -0.61
CLN3-203ENST00000357806 BTF3L4Q96K17 158 aa11.25□□□□□ -0.61
CLN3-203ENST00000357806 IMMP2LQ96T52 175 aa11.25□□□□□ -0.61
CLN3-203ENST00000357806 CTDSP1Q9GZU7 261 aa11.25□□□□□ -0.61
CLN3-203ENST00000357806 DNAH5Q8TE73 4624 aa11.25□□□□□ -0.61
CLN3-203ENST00000357806 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.24□□□□□ -0.61
CLN3-203ENST00000357806 IGKV2-29A2NJV5 120 aaPredicted RBP11.24□□□□□ -0.61
CLN3-203ENST00000357806 D6R8Y8 96 aa11.24□□□□□ -0.61
CLN3-203ENST00000357806 VCYO14598 125 aa11.24□□□□□ -0.61
CLN3-203ENST00000357806 FUSP35637 526 aaKnown RBP eCLIP11.24□□□□□ -0.61
CLN3-203ENST00000357806 NTN5Q8WTR8 489 aaPredicted RBP11.24□□□□□ -0.61
CLN3-203ENST00000357806 TRBV24-1A0A075B6N3 115 aa11.23□□□□□ -0.61
CLN3-203ENST00000357806 LECT2O14960 151 aa11.23□□□□□ -0.61
CLN3-203ENST00000357806 PPBPP02775 128 aa11.23□□□□□ -0.61
CLN3-203ENST00000357806 WFDC2Q14508 124 aa11.23□□□□□ -0.61
CLN3-203ENST00000357806 BAALCQ8WXS3 180 aa11.23□□□□□ -0.61
CLN3-203ENST00000357806 KIR2DL4Q99706 377 aa11.23□□□□□ -0.61
CLN3-203ENST00000357806 C20orf78Q9BR46 151 aa11.23□□□□□ -0.61
CLN3-203ENST00000357806 TNFRSF6BO95407 300 aa11.22□□□□□ -0.61
CLN3-203ENST00000357806 ESDP10768 282 aa11.22□□□□□ -0.61
CLN3-203ENST00000357806 ZNF25P17030 456 aaPredicted RBP11.22□□□□□ -0.61
CLN3-203ENST00000357806 FCER1GP30273 86 aa11.22□□□□□ -0.61
CLN3-203ENST00000357806 C10orf91Q5T1B1 145 aa11.22□□□□□ -0.61
CLN3-203ENST00000357806 RNASEKQ6P5S7 137 aaKnown RBP11.22□□□□□ -0.61
CLN3-203ENST00000357806 IGLV5-52A0A0A0MRZ9 124 aa11.21□□□□□ -0.61
CLN3-203ENST00000357806 C7orf77A4D0Y5 90 aa11.21□□□□□ -0.61
CLN3-203ENST00000357806 HLA-DQA1P01909 254 aa11.21□□□□□ -0.61
CLN3-203ENST00000357806 FGF6P10767 208 aa11.21□□□□□ -0.61
CLN3-203ENST00000357806 ORMDL3Q8N138 153 aa11.21□□□□□ -0.61
CLN3-203ENST00000357806 CARHSP1Q9Y2V2 147 aaKnown RBP11.21□□□□□ -0.61
CLN3-203ENST00000357806 TRAV8-4A0A0B4J246 113 aa11.2□□□□□ -0.62
CLN3-203ENST00000357806 PHOX2AO14813 284 aa11.2□□□□□ -0.62
CLN3-203ENST00000357806 RPL32P62910 135 aaKnown RBP11.2□□□□□ -0.62
CLN3-203ENST00000357806 LRP1BQ9NZR2 4599 aa11.2□□□□□ -0.62
CLN3-203ENST00000357806 TRAV9-1A0A075B6T8 112 aa11.19□□□□□ -0.62
CLN3-203ENST00000357806 NPYP01303 97 aa11.19□□□□□ -0.62
CLN3-203ENST00000357806 TMEM101Q96IK0 257 aa11.19□□□□□ -0.62
CLN3-203ENST00000357806 SMIM2Q9BVW6 85 aa11.19□□□□□ -0.62
CLN3-203ENST00000357806 IGLV10-54A0A075B6I4 117 aa11.19□□□□□ -0.62
CLN3-203ENST00000357806 TCAPO15273 167 aa11.19□□□□□ -0.62
CLN3-203ENST00000357806 CDK2AP2O75956 126 aa11.19□□□□□ -0.62
CLN3-203ENST00000357806 S100PP25815 95 aa11.19□□□□□ -0.62
CLN3-203ENST00000357806 RHEBQ15382 184 aa11.19□□□□□ -0.62
CLN3-203ENST00000357806 TMEM136Q6ZRR5 245 aa11.19□□□□□ -0.62
CLN3-203ENST00000357806 GCSHP23434 173 aa11.18□□□□□ -0.62
CLN3-203ENST00000357806 C14orf177Q52M58 125 aa11.18□□□□□ -0.62
CLN3-203ENST00000357806 PRELID3AQ96N28 172 aa11.18□□□□□ -0.62
CLN3-203ENST00000357806 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.17□□□□□ -0.62
CLN3-203ENST00000357806 SMAGPQ0VAQ4 97 aa11.17□□□□□ -0.62
CLN3-203ENST00000357806 KRTAP26-1Q6PEX3 210 aa11.17□□□□□ -0.62
CLN3-203ENST00000357806 MRPL52Q86TS9 123 aaKnown RBP11.17□□□□□ -0.62
CLN3-203ENST00000357806 CLRN3Q8NCR9 226 aa11.17□□□□□ -0.62
CLN3-203ENST00000357806 OR5A1Q8NGJ0 315 aa11.17□□□□□ -0.62
CLN3-203ENST00000357806 LAMTOR2Q9Y2Q5 125 aa11.17□□□□□ -0.62
CLN3-203ENST00000357806 KIAA1109Q2LD37 5005 aa11.16□□□□□ -0.62
CLN3-203ENST00000357806 IGKV3OR2-268A0A0C4DH90 116 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms