RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 NIT1Q86X76 327 aa15.03■□□□□ -0
SHMT1-203ENST00000354098 C20orf78Q9BR46 151 aa15.03■□□□□ -0
SHMT1-203ENST00000354098 CHCHD5Q9BSY4 110 aa15.03■□□□□ -0
SHMT1-203ENST00000354098 DNAH6Q9C0G6 4158 aa15.03■□□□□ -0
SHMT1-203ENST00000354098 VCYO14598 125 aa15.02□□□□□ -0.01
SHMT1-203ENST00000354098 TSHBP01222 138 aa15.02□□□□□ -0.01
SHMT1-203ENST00000354098 MRPL18Q9H0U6 180 aaKnown RBP15.02□□□□□ -0.01
SHMT1-203ENST00000354098 PHOX2AO14813 284 aa15.01□□□□□ -0.01
SHMT1-203ENST00000354098 AMTP48728 403 aa15.01□□□□□ -0.01
SHMT1-203ENST00000354098 TMEM262E9PQX1 116 aa15□□□□□ -0.01
SHMT1-203ENST00000354098 SCO1O75880 301 aa15□□□□□ -0.01
SHMT1-203ENST00000354098 MT-ND6P03923 174 aa15□□□□□ -0.01
SHMT1-203ENST00000354098 FABP9Q0Z7S8 132 aa15□□□□□ -0.01
SHMT1-203ENST00000354098 GAGE6Q13070 117 aa15□□□□□ -0.01
SHMT1-203ENST00000354098 TTC32Q5I0X7 151 aa15□□□□□ -0.01
SHMT1-203ENST00000354098 TMEM243Q9BU79 118 aa15□□□□□ -0.01
SHMT1-203ENST00000354098 SMIM2Q9BVW6 85 aa14.99□□□□□ -0.01
SHMT1-203ENST00000354098 LAMTOR2Q9Y2Q5 125 aa14.99□□□□□ -0.01
SHMT1-203ENST00000354098 TRAPPC1Q9Y5R8 145 aa14.99□□□□□ -0.01
SHMT1-203ENST00000354098 TRAV9-2A0A087WT02 112 aa14.98□□□□□ -0.01
SHMT1-203ENST00000354098 LOC389332A0A1B0GUA5 103 aa14.98□□□□□ -0.01
SHMT1-203ENST00000354098 RPL32P62910 135 aaKnown RBP14.98□□□□□ -0.01
SHMT1-203ENST00000354098 MPV17L2Q567V2 206 aa14.98□□□□□ -0.01
SHMT1-203ENST00000354098 CHCHD7Q9BUK0 85 aa14.98□□□□□ -0.01
SHMT1-203ENST00000354098 A0A087WX48 190 aa14.97□□□□□ -0.01
SHMT1-203ENST00000354098 ATP6V1G1O75348 118 aa14.97□□□□□ -0.01
SHMT1-203ENST00000354098 Q8N976 141 aa14.97□□□□□ -0.01
SHMT1-203ENST00000354098 KIR2DL4Q99706 377 aa14.97□□□□□ -0.01
SHMT1-203ENST00000354098 IGKV2D-29A0A075B6S2 120 aaPredicted RBP14.96□□□□□ -0.01
SHMT1-203ENST00000354098 IGKV2-29A2NJV5 120 aaPredicted RBP14.96□□□□□ -0.01
SHMT1-203ENST00000354098 PRSS47A8MTI9 375 aa14.96□□□□□ -0.01
SHMT1-203ENST00000354098 FCER1GP30273 86 aa14.96□□□□□ -0.01
SHMT1-203ENST00000354098 ALKBH7Q9BT30 221 aaPredicted RBP14.96□□□□□ -0.01
SHMT1-203ENST00000354098 MAP1LC3AQ9H492 121 aa14.96□□□□□ -0.01
SHMT1-203ENST00000354098 ESDP10768 282 aa14.95□□□□□ -0.02
SHMT1-203ENST00000354098 K7EP13 123 aa14.94□□□□□ -0.02
SHMT1-203ENST00000354098 TCAPO15273 167 aa14.94□□□□□ -0.02
SHMT1-203ENST00000354098 C10orf126Q8N4M7 172 aa14.94□□□□□ -0.02
SHMT1-203ENST00000354098 UBE2L6O14933 153 aa14.93□□□□□ -0.02
SHMT1-203ENST00000354098 RBX1P62877 108 aa14.93□□□□□ -0.02
SHMT1-203ENST00000354098 KLK12Q9UKR0 248 aa14.93□□□□□ -0.02
SHMT1-203ENST00000354098 COLCA2A8K830 154 aa14.93□□□□□ -0.02
SHMT1-203ENST00000354098 IBA57-AS1B1ANH7 110 aa14.93□□□□□ -0.02
SHMT1-203ENST00000354098 C1orf134Q5TEV5 83 aa14.93□□□□□ -0.02
SHMT1-203ENST00000354098 C6orf223Q8N319 242 aa14.93□□□□□ -0.02
SHMT1-203ENST00000354098 DNAH2Q9P225 4427 aa14.93□□□□□ -0.02
SHMT1-203ENST00000354098 PKIAP61925 76 aa14.91□□□□□ -0.02
SHMT1-203ENST00000354098 IGLV4-60A0A075B6I1 120 aa14.9□□□□□ -0.02
SHMT1-203ENST00000354098 RTL8CO15255 209 aa14.9□□□□□ -0.02
SHMT1-203ENST00000354098 S100A1P23297 94 aa14.9□□□□□ -0.02
SHMT1-203ENST00000354098 IFI27P40305 119 aaPredicted RBP14.9□□□□□ -0.02
SHMT1-203ENST00000354098 Q8N8P6 123 aa14.9□□□□□ -0.02
SHMT1-203ENST00000354098 ANGP03950 147 aaKnown RBP14.9□□□□□ -0.02
SHMT1-203ENST00000354098 A0A1B0GUV1 79 aa14.89□□□□□ -0.03
SHMT1-203ENST00000354098 FGF6P10767 208 aa14.89□□□□□ -0.03
SHMT1-203ENST00000354098 Q9HAA7 133 aa14.89□□□□□ -0.03
SHMT1-203ENST00000354098 H7C423 109 aa14.88□□□□□ -0.03
SHMT1-203ENST00000354098 RAB5AP20339 215 aa14.88□□□□□ -0.03
SHMT1-203ENST00000354098 C20orf203Q8NBC4 194 aa14.88□□□□□ -0.03
SHMT1-203ENST00000354098 AMMECR1LQ6DCA0 310 aa14.87□□□□□ -0.03
SHMT1-203ENST00000354098 RNASEKQ6P5S7 137 aaKnown RBP14.87□□□□□ -0.03
SHMT1-203ENST00000354098 LAGE3Q14657 143 aa14.87□□□□□ -0.03
SHMT1-203ENST00000354098 UBE2WQ96B02 151 aa14.87□□□□□ -0.03
SHMT1-203ENST00000354098 NXT2Q9NPJ8 142 aaKnown RBP14.87□□□□□ -0.03
SHMT1-203ENST00000354098 ENHOQ6UWT2 76 aa14.86□□□□□ -0.03
SHMT1-203ENST00000354098 LINC00269Q8N2A0 174 aa14.86□□□□□ -0.03
SHMT1-203ENST00000354098 TRGC2P03986 189 aa14.85□□□□□ -0.03
SHMT1-203ENST00000354098 BTF3P20290 206 aaKnown RBP14.85□□□□□ -0.03
SHMT1-203ENST00000354098 RPL39P62891 51 aaKnown RBP14.85□□□□□ -0.03
SHMT1-203ENST00000354098 CLPSL2Q6UWE3 100 aa14.85□□□□□ -0.03
SHMT1-203ENST00000354098 Q6ZRN7 208 aaPredicted RBP14.85□□□□□ -0.03
SHMT1-203ENST00000354098 PRSS3P2Q8NHM4 247 aa14.85□□□□□ -0.03
SHMT1-203ENST00000354098 C18orf32Q8TCD1 76 aa14.84□□□□□ -0.03
SHMT1-203ENST00000354098 FRAS1Q86XX4 4008 aa14.83□□□□□ -0.04
SHMT1-203ENST00000354098 TRAV8-3A0A0A6YYJ7 113 aa14.83□□□□□ -0.04
SHMT1-203ENST00000354098 MRPL52Q86TS9 123 aaKnown RBP14.83□□□□□ -0.04
SHMT1-203ENST00000354098 PRR34Q9NV39 138 aa14.83□□□□□ -0.04
SHMT1-203ENST00000354098 UBE2D4Q9Y2X8 147 aa14.83□□□□□ -0.04
SHMT1-203ENST00000354098 NFE4Q86UQ8 179 aa14.82□□□□□ -0.04
SHMT1-203ENST00000354098 DNAH10Q8IVF4 4471 aa14.81□□□□□ -0.04
SHMT1-203ENST00000354098 ZNF25P17030 456 aaPredicted RBP14.81□□□□□ -0.04
SHMT1-203ENST00000354098 REG3AQ06141 175 aa14.81□□□□□ -0.04
SHMT1-203ENST00000354098 TMEM18Q96B42 140 aa14.81□□□□□ -0.04
SHMT1-203ENST00000354098 CRPP02741 224 aa14.81□□□□□ -0.04
SHMT1-203ENST00000354098 ORMDL2Q53FV1 153 aa14.81□□□□□ -0.04
SHMT1-203ENST00000354098 OR5A1Q8NGJ0 315 aa14.81□□□□□ -0.04
SHMT1-203ENST00000354098 TMEM101Q96IK0 257 aa14.81□□□□□ -0.04
SHMT1-203ENST00000354098 K7EMI3 77 aa14.8□□□□□ -0.04
SHMT1-203ENST00000354098 URB1-AS1Q96HZ7 61 aa14.8□□□□□ -0.04
SHMT1-203ENST00000354098 Q0VG73 95 aa14.79□□□□□ -0.04
SHMT1-203ENST00000354098 CDC42SE2Q9NRR3 84 aa14.79□□□□□ -0.04
SHMT1-203ENST00000354098 LINC01546A6NGU7 62 aa14.78□□□□□ -0.04
SHMT1-203ENST00000354098 TNP2Q05952 138 aa14.78□□□□□ -0.04
SHMT1-203ENST00000354098 DGAT2L7PQ6IED9 249 aa14.78□□□□□ -0.04
SHMT1-203ENST00000354098 IGKV2D-24A0A075B6R9 120 aa14.77□□□□□ -0.04
SHMT1-203ENST00000354098 IGKV3OR2-268A0A0C4DH90 116 aa14.77□□□□□ -0.04
SHMT1-203ENST00000354098 PRSS29PA6NIE9 313 aa14.77□□□□□ -0.04
SHMT1-203ENST00000354098 C2orf66Q6UXQ4 117 aa14.77□□□□□ -0.04
SHMT1-203ENST00000354098 FA2HQ7L5A8 372 aa14.77□□□□□ -0.04
SHMT1-203ENST00000354098 TIMM21Q9BVV7 248 aa14.77□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 89 ms