RNA–Protein interactions for RNA: ENST00000340477.9

SYNE4-202, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE4, Length 1,004 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-202ENST00000340477 TRBV6-5A0A0K0K1A5 114 aa12.81□□□□□ -0.36
SYNE4-202ENST00000340477 F8W036 122 aa12.81□□□□□ -0.36
SYNE4-202ENST00000340477 I3L3M4 83 aa12.81□□□□□ -0.36
SYNE4-202ENST00000340477 PMCHP20382 165 aa12.81□□□□□ -0.36
SYNE4-202ENST00000340477 KRTAP10-2P60368 255 aa12.81□□□□□ -0.36
SYNE4-202ENST00000340477 MRPL54Q6P161 138 aaKnown RBP12.81□□□□□ -0.36
SYNE4-202ENST00000340477 Q8N976 141 aa12.81□□□□□ -0.36
SYNE4-202ENST00000340477 RNF185Q96GF1 192 aa12.81□□□□□ -0.36
SYNE4-202ENST00000340477 DNAH11Q96DT5 4516 aa12.81□□□□□ -0.36
SYNE4-202ENST00000340477 MIAQ16674 131 aa12.79□□□□□ -0.36
SYNE4-202ENST00000340477 ATP5L2Q7Z4Y8 100 aa12.79□□□□□ -0.36
SYNE4-202ENST00000340477 COMMD7Q86VX2 200 aa12.79□□□□□ -0.36
SYNE4-202ENST00000340477 DEFB104AQ8WTQ1 72 aa12.79□□□□□ -0.36
SYNE4-202ENST00000340477 FAM104BQ5XKR9 115 aa12.78□□□□□ -0.36
SYNE4-202ENST00000340477 AMMECR1LQ6DCA0 310 aa12.78□□□□□ -0.36
SYNE4-202ENST00000340477 NTN5Q8WTR8 489 aaPredicted RBP12.78□□□□□ -0.36
SYNE4-202ENST00000340477 A0A1B0GUV1 79 aa12.77□□□□□ -0.37
SYNE4-202ENST00000340477 TMEM218A2RU14 115 aa12.77□□□□□ -0.37
SYNE4-202ENST00000340477 LRCOL1A6NCL2 159 aa12.77□□□□□ -0.37
SYNE4-202ENST00000340477 LINC00269Q8N2A0 174 aa12.77□□□□□ -0.37
SYNE4-202ENST00000340477 TMEM70Q9BUB7 260 aa12.77□□□□□ -0.37
SYNE4-202ENST00000340477 LINC00862A6NCI5 91 aa12.76□□□□□ -0.37
SYNE4-202ENST00000340477 SMKR1H3BMG3 65 aa12.76□□□□□ -0.37
SYNE4-202ENST00000340477 H7C423 109 aa12.76□□□□□ -0.37
SYNE4-202ENST00000340477 CKS2P33552 79 aa12.76□□□□□ -0.37
SYNE4-202ENST00000340477 MRPL51Q4U2R6 128 aaKnown RBP12.76□□□□□ -0.37
SYNE4-202ENST00000340477 CLPSL2Q6UWE3 100 aa12.76□□□□□ -0.37
SYNE4-202ENST00000340477 ENHOQ6UWT2 76 aa12.76□□□□□ -0.37
SYNE4-202ENST00000340477 Q8N814 137 aa12.76□□□□□ -0.37
SYNE4-202ENST00000340477 IGLV5-52A0A0A0MRZ9 124 aa12.75□□□□□ -0.37
SYNE4-202ENST00000340477 A0A1B0GXF2 115 aa12.75□□□□□ -0.37
SYNE4-202ENST00000340477 FCER1GP30273 86 aa12.75□□□□□ -0.37
SYNE4-202ENST00000340477 RPS10P46783 165 aaKnown RBP12.75□□□□□ -0.37
SYNE4-202ENST00000340477 VCYO14598 125 aa12.74□□□□□ -0.37
SYNE4-202ENST00000340477 GAS8-AS1O95177 125 aa12.74□□□□□ -0.37
SYNE4-202ENST00000340477 SUMO2P61956 95 aaKnown RBP12.74□□□□□ -0.37
SYNE4-202ENST00000340477 REG3AQ06141 175 aa12.74□□□□□ -0.37
SYNE4-202ENST00000340477 RNASEKQ6P5S7 137 aaKnown RBP12.74□□□□□ -0.37
SYNE4-202ENST00000340477 KIR2DL4Q99706 377 aa12.74□□□□□ -0.37
SYNE4-202ENST00000340477 SEC11CQ9BY50 192 aa12.74□□□□□ -0.37
SYNE4-202ENST00000340477 PRR34Q9NV39 138 aa12.74□□□□□ -0.37
SYNE4-202ENST00000340477 TMEM242Q9NWH2 141 aa12.74□□□□□ -0.37
SYNE4-202ENST00000340477 DYNC1H1Q14204 4646 aaKnown RBP12.74□□□□□ -0.37
SYNE4-202ENST00000340477 TRBV27A0A0K0K1C4 114 aa12.73□□□□□ -0.37
SYNE4-202ENST00000340477 LECT2O14960 151 aa12.73□□□□□ -0.37
SYNE4-202ENST00000340477 BAALCQ8WXS3 180 aa12.73□□□□□ -0.37
SYNE4-202ENST00000340477 TMEM101Q96IK0 257 aa12.73□□□□□ -0.37
SYNE4-202ENST00000340477 BTF3L4Q96K17 158 aa12.73□□□□□ -0.37
SYNE4-202ENST00000340477 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.72□□□□□ -0.37
SYNE4-202ENST00000340477 IGKV2-29A2NJV5 120 aaPredicted RBP12.72□□□□□ -0.37
SYNE4-202ENST00000340477 TSHBP01222 138 aa12.72□□□□□ -0.37
SYNE4-202ENST00000340477 HLA-DQA1P01909 254 aa12.72□□□□□ -0.37
SYNE4-202ENST00000340477 PPBPP02775 128 aa12.72□□□□□ -0.37
SYNE4-202ENST00000340477 ADCYAP1P18509 176 aa12.72□□□□□ -0.37
SYNE4-202ENST00000340477 POLR2KP53803 58 aaKnown RBP12.72□□□□□ -0.37
SYNE4-202ENST00000340477 C14orf177Q52M58 125 aa12.72□□□□□ -0.37
SYNE4-202ENST00000340477 NRACQ8N912 160 aa12.72□□□□□ -0.37
SYNE4-202ENST00000340477 C20orf203Q8NBC4 194 aa12.72□□□□□ -0.37
SYNE4-202ENST00000340477 TRAV8-4A0A0B4J246 113 aa12.71□□□□□ -0.37
SYNE4-202ENST00000340477 CDK2AP2O75956 126 aa12.71□□□□□ -0.37
SYNE4-202ENST00000340477 ZNF25P17030 456 aaPredicted RBP12.71□□□□□ -0.37
SYNE4-202ENST00000340477 FUSP35637 526 aaKnown RBP eCLIP12.71□□□□□ -0.37
SYNE4-202ENST00000340477 SMAGPQ0VAQ4 97 aa12.71□□□□□ -0.37
SYNE4-202ENST00000340477 C20orf78Q9BR46 151 aa12.71□□□□□ -0.37
SYNE4-202ENST00000340477 CTDSP1Q9GZU7 261 aa12.71□□□□□ -0.37
SYNE4-202ENST00000340477 IGLV4-60A0A075B6I1 120 aa12.7□□□□□ -0.38
SYNE4-202ENST00000340477 C7orf77A4D0Y5 90 aa12.7□□□□□ -0.38
SYNE4-202ENST00000340477 D6R8Y8 96 aa12.7□□□□□ -0.38
SYNE4-202ENST00000340477 TCAPO15273 167 aa12.7□□□□□ -0.38
SYNE4-202ENST00000340477 FGF6P10767 208 aa12.7□□□□□ -0.38
SYNE4-202ENST00000340477 GCSHP23434 173 aa12.7□□□□□ -0.38
SYNE4-202ENST00000340477 IMMP2LQ96T52 175 aa12.7□□□□□ -0.38
SYNE4-202ENST00000340477 ORMDL3Q8N138 153 aa12.69□□□□□ -0.38
SYNE4-202ENST00000340477 MAPKAPK5-AS1Q8N8E1 139 aa12.69□□□□□ -0.38
SYNE4-202ENST00000340477 IGLV10-54A0A075B6I4 117 aa12.68□□□□□ -0.38
SYNE4-202ENST00000340477 TNFRSF6BO95407 300 aa12.68□□□□□ -0.38
SYNE4-202ENST00000340477 S100PP25815 95 aa12.68□□□□□ -0.38
SYNE4-202ENST00000340477 WFDC2Q14508 124 aa12.68□□□□□ -0.38
SYNE4-202ENST00000340477 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.67□□□□□ -0.38
SYNE4-202ENST00000340477 TRBV24-1A0A075B6N3 115 aa12.67□□□□□ -0.38
SYNE4-202ENST00000340477 PHOX2AO14813 284 aa12.67□□□□□ -0.38
SYNE4-202ENST00000340477 ESDP10768 282 aa12.67□□□□□ -0.38
SYNE4-202ENST00000340477 RPL32P62910 135 aaKnown RBP12.67□□□□□ -0.38
SYNE4-202ENST00000340477 OR5A1Q8NGJ0 315 aa12.67□□□□□ -0.38
SYNE4-202ENST00000340477 TMEM18Q96B42 140 aa12.67□□□□□ -0.38
SYNE4-202ENST00000340477 IGKV3OR2-268A0A0C4DH90 116 aa12.66□□□□□ -0.38
SYNE4-202ENST00000340477 DGAT2L7PQ6IED9 249 aa12.66□□□□□ -0.38
SYNE4-202ENST00000340477 TMEM136Q6ZRR5 245 aa12.66□□□□□ -0.38
SYNE4-202ENST00000340477 SMIM2Q9BVW6 85 aa12.66□□□□□ -0.38
SYNE4-202ENST00000340477 TRAV9-1A0A075B6T8 112 aa12.65□□□□□ -0.38
SYNE4-202ENST00000340477 PRELID3AQ96N28 172 aa12.65□□□□□ -0.38
SYNE4-202ENST00000340477 DNAH5Q8TE73 4624 aa12.65□□□□□ -0.39
SYNE4-202ENST00000340477 NPYP01303 97 aa12.64□□□□□ -0.39
SYNE4-202ENST00000340477 RHEBQ15382 184 aa12.64□□□□□ -0.39
SYNE4-202ENST00000340477 LAMTOR2Q9Y2Q5 125 aa12.64□□□□□ -0.39
SYNE4-202ENST00000340477 LRP1BQ9NZR2 4599 aa12.63□□□□□ -0.39
SYNE4-202ENST00000340477 KIAA1109Q2LD37 5005 aa12.63□□□□□ -0.39
SYNE4-202ENST00000340477 USP17L23D6RBM5 183 aa12.63□□□□□ -0.39
SYNE4-202ENST00000340477 NDUFA5Q16718 116 aa12.63□□□□□ -0.39
SYNE4-202ENST00000340477 MRPL52Q86TS9 123 aaKnown RBP12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms