RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 FAM236BA0A1B0GV22 79 aa1.48□□□□□ -2.17
HMGB1-201ENST00000326004 A0A1B0GX51 115 aa1.48□□□□□ -2.17
HMGB1-201ENST00000326004 DUXBA0A1W2PPF3 345 aa1.48□□□□□ -2.17
HMGB1-201ENST00000326004 A0A1W2PPM0 123 aa1.48□□□□□ -2.17
HMGB1-201ENST00000326004 IRGMA1A4Y4 181 aa1.48□□□□□ -2.17
HMGB1-201ENST00000326004 MEIS3P1A6NDR6 274 aa1.48□□□□□ -2.17
HMGB1-201ENST00000326004 FAM24AA6NFZ4 105 aa1.48□□□□□ -2.17
HMGB1-201ENST00000326004 A8MT66 165 aa1.48□□□□□ -2.17
HMGB1-201ENST00000326004 ZNF736B4DX44 427 aaPredicted RBP1.48□□□□□ -2.17
HMGB1-201ENST00000326004 E7EQL1 145 aa1.48□□□□□ -2.17
HMGB1-201ENST00000326004 C3orf84H3BNL1 204 aa1.48□□□□□ -2.17
HMGB1-201ENST00000326004 J3QRE1 110 aa1.48□□□□□ -2.17
HMGB1-201ENST00000326004 NPFFO15130 113 aa1.48□□□□□ -2.17
HMGB1-201ENST00000326004 RER1O15258 196 aa1.48□□□□□ -2.17
HMGB1-201ENST00000326004 PGLYRP1O75594 196 aaPredicted RBP1.48□□□□□ -2.17
HMGB1-201ENST00000326004 OR2H2O95918 312 aa1.48□□□□□ -2.17
HMGB1-201ENST00000326004 DBIP07108 87 aaKnown RBP1.48□□□□□ -2.17
HMGB1-201ENST00000326004 C3orf79P0CE67 100 aa1.48□□□□□ -2.17
HMGB1-201ENST00000326004 IGLC6P0CF74 106 aa1.48□□□□□ -2.17
HMGB1-201ENST00000326004 PRB4P10163 310 aaPredicted RBP1.48□□□□□ -2.17
HMGB1-201ENST00000326004 FABP2P12104 132 aa1.48□□□□□ -2.17
HMGB1-201ENST00000326004 FAUP35544 74 aaKnown RBP1.48□□□□□ -2.17
HMGB1-201ENST00000326004 G6PCP35575 357 aa1.48□□□□□ -2.17
HMGB1-201ENST00000326004 ZNF93P35789 620 aaPredicted RBP1.48□□□□□ -2.17
HMGB1-201ENST00000326004 INSL3P51460 131 aa1.48□□□□□ -2.17
HMGB1-201ENST00000326004 HSPE1P61604 102 aaKnown RBP1.48□□□□□ -2.17
HMGB1-201ENST00000326004 LCN6P62502 163 aa1.48□□□□□ -2.17
HMGB1-201ENST00000326004 RPS28P62857 69 aaKnown RBP1.48□□□□□ -2.17
HMGB1-201ENST00000326004 SEC11AP67812 179 aa1.48□□□□□ -2.17
HMGB1-201ENST00000326004 DEFB133Q30KQ1 61 aa1.48□□□□□ -2.17
HMGB1-201ENST00000326004 ZNF791Q3KP31 576 aaPredicted RBP1.48□□□□□ -2.17
HMGB1-201ENST00000326004 KRTAP6-3Q3LI67 103 aa1.48□□□□□ -2.17
HMGB1-201ENST00000326004 MRPL54Q6P161 138 aaKnown RBP1.48□□□□□ -2.17
HMGB1-201ENST00000326004 TMEM86AQ8N2M4 240 aa1.48□□□□□ -2.17
HMGB1-201ENST00000326004 TMEM229BQ8NBD8 167 aa1.48□□□□□ -2.17
HMGB1-201ENST00000326004 FDCSPQ8NFU4 85 aa1.48□□□□□ -2.17
HMGB1-201ENST00000326004 OR51T1Q8NGJ9 327 aa1.48□□□□□ -2.17
HMGB1-201ENST00000326004 OR4C16Q8NGL9 310 aa1.48□□□□□ -2.17
HMGB1-201ENST00000326004 CLDND2Q8NHS1 167 aa1.48□□□□□ -2.17
HMGB1-201ENST00000326004 MRPL30Q8TCC3 161 aaKnown RBP1.48□□□□□ -2.17
HMGB1-201ENST00000326004 C18orf32Q8TCD1 76 aa1.48□□□□□ -2.17
HMGB1-201ENST00000326004 AQP3Q92482 292 aa1.48□□□□□ -2.17
HMGB1-201ENST00000326004 RAB37Q96AX2 223 aa1.48□□□□□ -2.17
HMGB1-201ENST00000326004 PRELID3AQ96N28 172 aa1.48□□□□□ -2.17
HMGB1-201ENST00000326004 AQP10Q96PS8 301 aa1.48□□□□□ -2.17
HMGB1-201ENST00000326004 PRADC1Q9BSG0 188 aa1.48□□□□□ -2.17
HMGB1-201ENST00000326004 C11orf68Q9H3H3 251 aaKnown RBP1.48□□□□□ -2.17
HMGB1-201ENST00000326004 TMEM242Q9NWH2 141 aa1.48□□□□□ -2.17
HMGB1-201ENST00000326004 ABRACLQ9P1F3 81 aa1.48□□□□□ -2.17
HMGB1-201ENST00000326004 PRNDQ9UKY0 176 aa1.48□□□□□ -2.17
HMGB1-201ENST00000326004 HILPDAQ9Y5L2 63 aa1.48□□□□□ -2.17
HMGB1-201ENST00000326004 DNAJC15Q9Y5T4 150 aa1.48□□□□□ -2.17
HMGB1-201ENST00000326004 U3KQA8 63 aa1.48□□□□□ -2.17
HMGB1-201ENST00000326004 AKAP6Q13023 2319 aa1.48□□□□□ -2.17
HMGB1-201ENST00000326004 PLIN4Q96Q06 1357 aa1.47□□□□□ -2.17
HMGB1-201ENST00000326004 IGKV1D-43A0A0B4J1Z2 117 aa1.47□□□□□ -2.17
HMGB1-201ENST00000326004 F2Z2F3 143 aa1.47□□□□□ -2.17
HMGB1-201ENST00000326004 C17orf112F2Z3M2 114 aa1.47□□□□□ -2.17
HMGB1-201ENST00000326004 F8W1H4 67 aa1.47□□□□□ -2.17
HMGB1-201ENST00000326004 ZNF737O75373 536 aa1.47□□□□□ -2.17
HMGB1-201ENST00000326004 APOA2P02652 100 aa1.47□□□□□ -2.17
HMGB1-201ENST00000326004 APOC2P02655 101 aa1.47□□□□□ -2.17
HMGB1-201ENST00000326004 MT-ND6P03923 174 aa1.47□□□□□ -2.17
HMGB1-201ENST00000326004 SLC25A5P05141 298 aaKnown RBP1.47□□□□□ -2.17
HMGB1-201ENST00000326004 GPX1P07203 203 aa1.47□□□□□ -2.17
HMGB1-201ENST00000326004 CSN1S1P47710 185 aa1.47□□□□□ -2.17
HMGB1-201ENST00000326004 HES1Q14469 280 aa1.47□□□□□ -2.17
HMGB1-201ENST00000326004 PMCHL1Q16048 86 aa1.47□□□□□ -2.17
HMGB1-201ENST00000326004 ETDBQ3ZM63 59 aa1.47□□□□□ -2.17
HMGB1-201ENST00000326004 Q56UQ5 140 aa1.47□□□□□ -2.17
HMGB1-201ENST00000326004 C9orf153Q5TBE3 101 aa1.47□□□□□ -2.17
HMGB1-201ENST00000326004 Q5XG85 94 aa1.47□□□□□ -2.17
HMGB1-201ENST00000326004 C12orf73Q69YU5 71 aa1.47□□□□□ -2.17
HMGB1-201ENST00000326004 GOLT1AQ6ZVE7 132 aa1.47□□□□□ -2.17
HMGB1-201ENST00000326004 C10orf126Q8N4M7 172 aa1.47□□□□□ -2.17
HMGB1-201ENST00000326004 OR11H6Q8NGC7 330 aa1.47□□□□□ -2.17
HMGB1-201ENST00000326004 ZNF563Q8TA94 476 aa1.47□□□□□ -2.17
HMGB1-201ENST00000326004 SMCR5Q8TEV8 140 aa1.47□□□□□ -2.17
HMGB1-201ENST00000326004 CARD19Q96LW7 228 aa1.47□□□□□ -2.17
HMGB1-201ENST00000326004 MCEEQ96PE7 176 aa1.47□□□□□ -2.17
HMGB1-201ENST00000326004 HIGD2AQ9BW72 106 aa1.47□□□□□ -2.17
HMGB1-201ENST00000326004 NMES1Q9C002 83 aa1.47□□□□□ -2.17
HMGB1-201ENST00000326004 SH3BGRL3Q9H299 93 aa1.47□□□□□ -2.17
HMGB1-201ENST00000326004 ACER3Q9NUN7 267 aa1.47□□□□□ -2.17
HMGB1-201ENST00000326004 IER3IP1Q9Y5U9 82 aa1.47□□□□□ -2.17
HMGB1-201ENST00000326004 ARL2-SNX15V9GYD0 113 aa1.47□□□□□ -2.17
HMGB1-201ENST00000326004 TENM2Q9NT68 2774 aa1.47□□□□□ -2.17
HMGB1-201ENST00000326004 POLEQ07864 2286 aa1.46□□□□□ -2.18
HMGB1-201ENST00000326004 PLXNA2O75051 1894 aa1.46□□□□□ -2.18
HMGB1-201ENST00000326004 TRAV1-2A0A0B4J238 106 aa1.46□□□□□ -2.18
HMGB1-201ENST00000326004 TRAV5A0A0B4J249 113 aa1.46□□□□□ -2.18
HMGB1-201ENST00000326004 ARRDC5A6NEK1 342 aa1.46□□□□□ -2.18
HMGB1-201ENST00000326004 OOSP1A8MZH6 123 aa1.46□□□□□ -2.18
HMGB1-201ENST00000326004 H3BPC8 53 aa1.46□□□□□ -2.18
HMGB1-201ENST00000326004 SYS1-DBNDD2H3BUS1 97 aa1.46□□□□□ -2.18
HMGB1-201ENST00000326004 CDC42EP2O14613 210 aa1.46□□□□□ -2.18
HMGB1-201ENST00000326004 LEPROTO15243 131 aa1.46□□□□□ -2.18
HMGB1-201ENST00000326004 NPYP01303 97 aa1.46□□□□□ -2.18
HMGB1-201ENST00000326004 IGKV1-5P01602 117 aa1.46□□□□□ -2.18
HMGB1-201ENST00000326004 CD3DP04234 171 aa1.46□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 117.7 ms