RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 PTH2Q96A98 100 aa12.16□□□□□ -0.46
VPS54-201ENST00000272322 TRBV7-9A0A0J9YWB2 115 aa12.16□□□□□ -0.46
VPS54-201ENST00000272322 I3L3M4 83 aa12.16□□□□□ -0.46
VPS54-201ENST00000272322 SCGB1C2P0DMR2 95 aa12.16□□□□□ -0.46
VPS54-201ENST00000272322 MAP6D1Q9H9H5 199 aa12.16□□□□□ -0.46
VPS54-201ENST00000272322 Q6ZSV7 163 aa12.16□□□□□ -0.46
VPS54-201ENST00000272322 TRGV11A0A075B6L2 103 aa12.15□□□□□ -0.46
VPS54-201ENST00000272322 C20orf203Q8NBC4 194 aa12.15□□□□□ -0.46
VPS54-201ENST00000272322 TRGV1A0A0A0MS02 117 aa12.15□□□□□ -0.46
VPS54-201ENST00000272322 A0A1B0GWB2 263 aa12.15□□□□□ -0.46
VPS54-201ENST00000272322 RRN3P1Q2M238 152 aa12.15□□□□□ -0.46
VPS54-201ENST00000272322 OR5A1Q8NGJ0 315 aa12.15□□□□□ -0.46
VPS54-201ENST00000272322 ZNF625Q96I27 306 aaPredicted RBP12.14□□□□□ -0.47
VPS54-201ENST00000272322 A0A0J9YY99 117 aa12.14□□□□□ -0.47
VPS54-201ENST00000272322 RPL35AP18077 110 aaKnown RBP12.14□□□□□ -0.47
VPS54-201ENST00000272322 DAND5Q8N907 189 aa12.14□□□□□ -0.47
VPS54-201ENST00000272322 IGKV3OR2-268A0A0C4DH90 116 aa12.13□□□□□ -0.47
VPS54-201ENST00000272322 NDUFA7O95182 113 aa12.13□□□□□ -0.47
VPS54-201ENST00000272322 CITED2Q99967 270 aaPredicted RBP12.13□□□□□ -0.47
VPS54-201ENST00000272322 GTSF1LQ9H1H1 148 aa12.13□□□□□ -0.47
VPS54-201ENST00000272322 ESM1Q9NQ30 184 aa12.13□□□□□ -0.47
VPS54-201ENST00000272322 IGLV4-3A0A075B6K6 122 aa12.13□□□□□ -0.47
VPS54-201ENST00000272322 SAMD13Q5VXD3 122 aa12.13□□□□□ -0.47
VPS54-201ENST00000272322 PEMTQ9UBM1 199 aa12.13□□□□□ -0.47
VPS54-201ENST00000272322 DEFB114Q30KQ6 69 aa12.12□□□□□ -0.47
VPS54-201ENST00000272322 SPINK8P0C7L1 97 aa12.12□□□□□ -0.47
VPS54-201ENST00000272322 GAGE13Q4V321 117 aa12.12□□□□□ -0.47
VPS54-201ENST00000272322 STHQ8IWL8 128 aa12.12□□□□□ -0.47
VPS54-201ENST00000272322 SMR3AQ99954 134 aa12.12□□□□□ -0.47
VPS54-201ENST00000272322 YAE1D1Q9NRH1 226 aa12.12□□□□□ -0.47
VPS54-201ENST00000272322 DNAJC9-AS1A6NH13 148 aa12.12□□□□□ -0.47
VPS54-201ENST00000272322 Q1RN00 199 aa12.12□□□□□ -0.47
VPS54-201ENST00000272322 NSUN5P1Q3KNT7 163 aa12.11□□□□□ -0.47
VPS54-201ENST00000272322 DGAT2L7PQ6IED9 249 aa12.11□□□□□ -0.47
VPS54-201ENST00000272322 TMEM141Q96I45 108 aa12.11□□□□□ -0.47
VPS54-201ENST00000272322 TIMM17AQ99595 171 aa12.11□□□□□ -0.47
VPS54-201ENST00000272322 ZNF22P17026 224 aaPredicted RBP12.1□□□□□ -0.47
VPS54-201ENST00000272322 OTOGQ6ZRI0 2925 aa12.1□□□□□ -0.47
VPS54-201ENST00000272322 A4D1N5 150 aa12.1□□□□□ -0.47
VPS54-201ENST00000272322 G3V4G9 280 aa12.1□□□□□ -0.47
VPS54-201ENST00000272322 TSPAN13O95857 204 aa12.1□□□□□ -0.47
VPS54-201ENST00000272322 M0R2P5 195 aa12.09□□□□□ -0.47
VPS54-201ENST00000272322 ODF3L2Q3SX64 289 aa12.09□□□□□ -0.47
VPS54-201ENST00000272322 LINC00467Q9BRT7 94 aa12.09□□□□□ -0.47
VPS54-201ENST00000272322 CFAP126Q5VTH2 177 aa12.09□□□□□ -0.47
VPS54-201ENST00000272322 CCL24O00175 119 aa12.08□□□□□ -0.48
VPS54-201ENST00000272322 FSHBP01225 129 aa12.08□□□□□ -0.48
VPS54-201ENST00000272322 Q6ZUT4 128 aa12.08□□□□□ -0.48
VPS54-201ENST00000272322 POM121L12Q8N7R1 296 aa12.08□□□□□ -0.48
VPS54-201ENST00000272322 TSSC4Q9Y5U2 329 aaPredicted RBP12.08□□□□□ -0.48
VPS54-201ENST00000272322 TRBV6-5A0A0K0K1A5 114 aa12.08□□□□□ -0.48
VPS54-201ENST00000272322 TMEM89A2RUT3 159 aa12.08□□□□□ -0.48
VPS54-201ENST00000272322 RHODO00212 210 aa12.08□□□□□ -0.48
VPS54-201ENST00000272322 SMAGPQ0VAQ4 97 aa12.08□□□□□ -0.48
VPS54-201ENST00000272322 Q6ZTI0 123 aa12.08□□□□□ -0.48
VPS54-201ENST00000272322 CFC1BP0CG36 223 aa12.07□□□□□ -0.48
VPS54-201ENST00000272322 CFC1P0CG37 223 aa12.07□□□□□ -0.48
VPS54-201ENST00000272322 ZNF415Q09FC8 603 aa12.07□□□□□ -0.48
VPS54-201ENST00000272322 TAL2Q16559 108 aa12.07□□□□□ -0.48
VPS54-201ENST00000272322 MUSTN1Q8IVN3 82 aa12.07□□□□□ -0.48
VPS54-201ENST00000272322 TRAV13-1A0A0B4J241 112 aa12.07□□□□□ -0.48
VPS54-201ENST00000272322 TMEM238LA0A1B0GVL6 79 aa12.07□□□□□ -0.48
VPS54-201ENST00000272322 A6NJY4 79 aa12.07□□□□□ -0.48
VPS54-201ENST00000272322 PAPPA-AS1Q5QFB9 102 aa12.06□□□□□ -0.48
VPS54-201ENST00000272322 C4orf3Q8WVX3 66 aa12.06□□□□□ -0.48
VPS54-201ENST00000272322 ODF3Q96PU9 254 aa12.06□□□□□ -0.48
VPS54-201ENST00000272322 GAGE12JA6NER3 117 aa12.06□□□□□ -0.48
VPS54-201ENST00000272322 GAGE4Q13068 117 aa12.06□□□□□ -0.48
VPS54-201ENST00000272322 GAGE5Q13069 117 aa12.06□□□□□ -0.48
VPS54-201ENST00000272322 NDUFA11Q86Y39 141 aa12.06□□□□□ -0.48
VPS54-201ENST00000272322 KRTAP1-3Q8IUG1 177 aa12.06□□□□□ -0.48
VPS54-201ENST00000272322 NOP10Q9NPE3 64 aaKnown RBP12.06□□□□□ -0.48
VPS54-201ENST00000272322 TENM1Q9UKZ4 2725 aa12.06□□□□□ -0.48
VPS54-201ENST00000272322 IGHV3-30-3P0DP02 117 aa12.06□□□□□ -0.48
VPS54-201ENST00000272322 C10orf126Q8N4M7 172 aa12.06□□□□□ -0.48
VPS54-201ENST00000272322 INSP01308 110 aa12.05□□□□□ -0.48
VPS54-201ENST00000272322 TIMM21Q9BVV7 248 aa12.05□□□□□ -0.48
VPS54-201ENST00000272322 PDZD2O15018 2839 aa12.05□□□□□ -0.48
VPS54-201ENST00000272322 IGHV3-30P01768 117 aa12.05□□□□□ -0.48
VPS54-201ENST00000272322 IGHV3-30-5P0DP03 117 aa12.05□□□□□ -0.48
VPS54-201ENST00000272322 GEMIN7Q9H840 131 aaKnown RBP12.05□□□□□ -0.48
VPS54-201ENST00000272322 TMEM223A0PJW6 202 aa12.04□□□□□ -0.48
VPS54-201ENST00000272322 COTL1Q14019 142 aa12.04□□□□□ -0.48
VPS54-201ENST00000272322 RHOHQ15669 191 aa12.04□□□□□ -0.48
VPS54-201ENST00000272322 SLC25A29Q8N8R3 303 aa12.04□□□□□ -0.48
VPS54-201ENST00000272322 TEP1Q99973 2627 aaKnown RBP12.04□□□□□ -0.48
VPS54-201ENST00000272322 SPANXB1Q9NS25 103 aaPredicted RBP12.04□□□□□ -0.48
VPS54-201ENST00000272322 A8MWV9 139 aa12.03□□□□□ -0.48
VPS54-201ENST00000272322 GAGE7O76087 117 aa12.03□□□□□ -0.48
VPS54-201ENST00000272322 GAGE12FP0CL80 117 aa12.03□□□□□ -0.48
VPS54-201ENST00000272322 GAGE12GP0CL81 117 aa12.03□□□□□ -0.48
VPS54-201ENST00000272322 GAGE12IP0CL82 117 aa12.03□□□□□ -0.48
VPS54-201ENST00000272322 TCL1BO95988 128 aa12.03□□□□□ -0.48
VPS54-201ENST00000272322 LINC00694P0DN24 101 aa12.03□□□□□ -0.48
VPS54-201ENST00000272322 LOC100131303A0A0U1RQF7 123 aa12.02□□□□□ -0.48
VPS54-201ENST00000272322 C1orf158Q8N1D5 194 aa12.02□□□□□ -0.48
VPS54-201ENST00000272322 AMELXQ99217 191 aa12.02□□□□□ -0.48
VPS54-201ENST00000272322 CDKN2A-AS1Q9UH64 79 aa12.02□□□□□ -0.49
VPS54-201ENST00000272322 ADAMTSL4-AS1Q5T5F5 129 aa12.02□□□□□ -0.49
VPS54-201ENST00000272322 C11orf72Q8NBR9 251 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 83.5 ms