RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 RPH3ALQ9UNE2 315 aa4.14□□□□□ -1.75
CUX1-220ENST00000607092 LECT2O14960 151 aa4.13□□□□□ -1.75
CUX1-220ENST00000607092 SCO1O75880 301 aa4.13□□□□□ -1.75
CUX1-220ENST00000607092 TNFRSF6BO95407 300 aa4.13□□□□□ -1.75
CUX1-220ENST00000607092 GCGP01275 180 aa4.13□□□□□ -1.75
CUX1-220ENST00000607092 CRPP02741 224 aa4.13□□□□□ -1.75
CUX1-220ENST00000607092 ASIPP42127 132 aa4.13□□□□□ -1.75
CUX1-220ENST00000607092 PTTG1IPP53801 180 aa4.13□□□□□ -1.75
CUX1-220ENST00000607092 RPL37AP61513 92 aaKnown RBP4.13□□□□□ -1.75
CUX1-220ENST00000607092 TMEM241Q24JQ0 296 aa4.13□□□□□ -1.75
CUX1-220ENST00000607092 DGAT2L7PQ6IED9 249 aa4.13□□□□□ -1.75
CUX1-220ENST00000607092 NIT1Q86X76 327 aa4.13□□□□□ -1.75
CUX1-220ENST00000607092 C15orf54Q8N8G6 183 aa4.13□□□□□ -1.75
CUX1-220ENST00000607092 CIRBP-AS1Q8TBR5 109 aa4.13□□□□□ -1.75
CUX1-220ENST00000607092 C9orf85Q96MD7 179 aa4.13□□□□□ -1.75
CUX1-220ENST00000607092 CTDSP1Q9GZU7 261 aa4.13□□□□□ -1.75
CUX1-220ENST00000607092 IGHV3-73A0A0B4J1V6 119 aa4.12□□□□□ -1.75
CUX1-220ENST00000607092 TRBV10-1A0A0K0K1A3 114 aa4.12□□□□□ -1.75
CUX1-220ENST00000607092 A0A1B0GV50 99 aa4.12□□□□□ -1.75
CUX1-220ENST00000607092 A0A1W2PRE2 83 aa4.12□□□□□ -1.75
CUX1-220ENST00000607092 GAGE12JA6NER3 117 aa4.12□□□□□ -1.75
CUX1-220ENST00000607092 C9orf118A6NHY6 69 aa4.12□□□□□ -1.75
CUX1-220ENST00000607092 ZNF727A8MUV8 499 aa4.12□□□□□ -1.75
CUX1-220ENST00000607092 B5MCH6 92 aa4.12□□□□□ -1.75
CUX1-220ENST00000607092 M0R036 132 aa4.12□□□□□ -1.75
CUX1-220ENST00000607092 PAGE4O60829 102 aa4.12□□□□□ -1.75
CUX1-220ENST00000607092 MT-ND4LP03901 98 aa4.12□□□□□ -1.75
CUX1-220ENST00000607092 TCRAP04437 139 aa4.12□□□□□ -1.75
CUX1-220ENST00000607092 GCHFRP30047 84 aa4.12□□□□□ -1.75
CUX1-220ENST00000607092 RPL36AP83881 106 aaKnown RBP4.12□□□□□ -1.75
CUX1-220ENST00000607092 GAGE1Q13065 139 aa4.12□□□□□ -1.75
CUX1-220ENST00000607092 GAGE4Q13068 117 aa4.12□□□□□ -1.75
CUX1-220ENST00000607092 GAGE5Q13069 117 aa4.12□□□□□ -1.75
CUX1-220ENST00000607092 WFDC2Q14508 124 aa4.12□□□□□ -1.75
CUX1-220ENST00000607092 TMEM97Q5BJF2 176 aa4.12□□□□□ -1.75
CUX1-220ENST00000607092 DAZ4Q86SG3 579 aaKnown RBP4.12□□□□□ -1.75
CUX1-220ENST00000607092 TMEM75Q8N9X5 138 aa4.12□□□□□ -1.75
CUX1-220ENST00000607092 RPL36ALQ969Q0 106 aaKnown RBP4.12□□□□□ -1.75
CUX1-220ENST00000607092 UBE2WQ96B02 151 aa4.12□□□□□ -1.75
CUX1-220ENST00000607092 TCEAL7Q9BRU2 100 aa4.12□□□□□ -1.75
CUX1-220ENST00000607092 PARLQ9H300 379 aa4.12□□□□□ -1.75
CUX1-220ENST00000607092 RPS10P5Q9NQ39 176 aa4.12□□□□□ -1.75
CUX1-220ENST00000607092 DAZ3Q9NR90 486 aaKnown RBP4.12□□□□□ -1.75
CUX1-220ENST00000607092 IL36BQ9NZH7 164 aa4.12□□□□□ -1.75
CUX1-220ENST00000607092 NAT8Q9UHE5 227 aa4.12□□□□□ -1.75
CUX1-220ENST00000607092 RNF213Q63HN8 5207 aa4.12□□□□□ -1.75
CUX1-220ENST00000607092 FAT3Q8TDW7 4589 aa4.12□□□□□ -1.75
CUX1-220ENST00000607092 PGPEP1LA6NFU8 196 aa4.11□□□□□ -1.75
CUX1-220ENST00000607092 FAM74A7A6NL05 159 aa4.11□□□□□ -1.75
CUX1-220ENST00000607092 COLCA2A8K830 154 aa4.11□□□□□ -1.75
CUX1-220ENST00000607092 FABP5P3A8MUU1 101 aa4.11□□□□□ -1.75
CUX1-220ENST00000607092 HMGB3O15347 200 aaKnown RBP4.11□□□□□ -1.75
CUX1-220ENST00000607092 ARL14EPLP0DKL9 152 aa4.11□□□□□ -1.75
CUX1-220ENST00000607092 LINC00694P0DN24 101 aa4.11□□□□□ -1.75
CUX1-220ENST00000607092 RPL19P84098 196 aaKnown RBP4.11□□□□□ -1.75
CUX1-220ENST00000607092 FLI1Q01543 452 aaPredicted RBP4.11□□□□□ -1.75
CUX1-220ENST00000607092 MIAQ16674 131 aa4.11□□□□□ -1.75
CUX1-220ENST00000607092 Q6ZRU5 148 aa4.11□□□□□ -1.75
CUX1-220ENST00000607092 C11orf52Q96A22 123 aa4.11□□□□□ -1.75
CUX1-220ENST00000607092 ZC2HC1AQ96GY0 325 aa4.11□□□□□ -1.75
CUX1-220ENST00000607092 BTF3L4Q96K17 158 aa4.11□□□□□ -1.75
CUX1-220ENST00000607092 LINC00479Q96M42 142 aa4.11□□□□□ -1.75
CUX1-220ENST00000607092 DPH3P1Q9H4G8 78 aa4.11□□□□□ -1.75
CUX1-220ENST00000607092 KLK12Q9UKR0 248 aa4.11□□□□□ -1.75
CUX1-220ENST00000607092 PSG8Q9UQ74 426 aa4.11□□□□□ -1.75
CUX1-220ENST00000607092 TRBV7-3A0A075B6L6 115 aa4.1□□□□□ -1.75
CUX1-220ENST00000607092 PPP1R2P9O14990 202 aa4.1□□□□□ -1.75
CUX1-220ENST00000607092 S100A9P06702 114 aaKnown RBP4.1□□□□□ -1.75
CUX1-220ENST00000607092 RNASE3P12724 160 aaKnown RBP4.1□□□□□ -1.75
CUX1-220ENST00000607092 KRTAP10-4P60372 401 aaPredicted RBP4.1□□□□□ -1.75
CUX1-220ENST00000607092 CST9LP1Q5W188 147 aa4.1□□□□□ -1.75
CUX1-220ENST00000607092 RNF185Q96GF1 192 aa4.1□□□□□ -1.75
CUX1-220ENST00000607092 IMMP2LQ96T52 175 aa4.1□□□□□ -1.75
CUX1-220ENST00000607092 SMIM7Q9BQ49 75 aa4.1□□□□□ -1.75
CUX1-220ENST00000607092 EPDR1Q9UM22 224 aa4.1□□□□□ -1.75
CUX1-220ENST00000607092 PHLDA3Q9Y5J5 127 aa4.1□□□□□ -1.75
CUX1-220ENST00000607092 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.09□□□□□ -1.75
CUX1-220ENST00000607092 TMEM262E9PQX1 116 aa4.09□□□□□ -1.75
CUX1-220ENST00000607092 CEBPGP53567 150 aa4.09□□□□□ -1.75
CUX1-220ENST00000607092 RPL23P62829 140 aaKnown RBP4.09□□□□□ -1.75
CUX1-220ENST00000607092 GNG5P63218 68 aa4.09□□□□□ -1.75
CUX1-220ENST00000607092 DNLZQ5SXM8 178 aa4.09□□□□□ -1.75
CUX1-220ENST00000607092 PRNTQ86SH4 94 aa4.09□□□□□ -1.75
CUX1-220ENST00000607092 CBLN2Q8IUK8 224 aa4.09□□□□□ -1.75
CUX1-220ENST00000607092 ZFP82Q8N141 532 aa4.09□□□□□ -1.75
CUX1-220ENST00000607092 C9orf163Q8N9P6 203 aa4.09□□□□□ -1.75
CUX1-220ENST00000607092 C11orf21Q9P2W6 132 aa4.09□□□□□ -1.75
CUX1-220ENST00000607092 ZFP30Q9Y2G7 519 aa4.09□□□□□ -1.75
CUX1-220ENST00000607092 TRBV24-1A0A075B6N3 115 aa4.08□□□□□ -1.76
CUX1-220ENST00000607092 TRBV6-8A0A0A6YYG3 113 aa4.08□□□□□ -1.76
CUX1-220ENST00000607092 C1orf196B1AJZ1 125 aa4.08□□□□□ -1.76
CUX1-220ENST00000607092 RAB5AP20339 215 aa4.08□□□□□ -1.76
CUX1-220ENST00000607092 S100PP25815 95 aa4.08□□□□□ -1.76
CUX1-220ENST00000607092 ZNF80P51504 273 aaPredicted RBP4.08□□□□□ -1.76
CUX1-220ENST00000607092 LINC01620Q4KN68 170 aa4.08□□□□□ -1.76
CUX1-220ENST00000607092 FAM74A4Q5TZK3 123 aa4.08□□□□□ -1.76
CUX1-220ENST00000607092 UFSP1Q6NVU6 142 aa4.08□□□□□ -1.76
CUX1-220ENST00000607092 OR10G8Q8NGN5 311 aa4.08□□□□□ -1.76
CUX1-220ENST00000607092 HIST1H2BAQ96A08 127 aa4.08□□□□□ -1.76
CUX1-220ENST00000607092 SMIM12Q96EX1 92 aa4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 77.8 ms