RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 CELA1Q9UNI1 258 aa10.81□□□□□ -0.68
SS18-215ENST00000580642 IGHV3-73A0A0B4J1V6 119 aa10.8□□□□□ -0.68
SS18-215ENST00000580642 SMKR1H3BMG3 65 aa10.8□□□□□ -0.68
SS18-215ENST00000580642 K7EQD1 137 aa10.8□□□□□ -0.68
SS18-215ENST00000580642 PMCHP20382 165 aa10.8□□□□□ -0.68
SS18-215ENST00000580642 BAGE3Q86Y29 109 aa10.8□□□□□ -0.68
SS18-215ENST00000580642 C11orf45Q8TAV5 145 aa10.8□□□□□ -0.68
SS18-215ENST00000580642 CHCHD1Q96BP2 118 aaKnown RBP10.8□□□□□ -0.68
SS18-215ENST00000580642 PRADC1Q9BSG0 188 aa10.8□□□□□ -0.68
SS18-215ENST00000580642 HHLA3Q9XRX5 114 aa10.8□□□□□ -0.68
SS18-215ENST00000580642 LINC01546A6NGU7 62 aa10.79□□□□□ -0.68
SS18-215ENST00000580642 VCYO14598 125 aa10.79□□□□□ -0.68
SS18-215ENST00000580642 ESDP10768 282 aa10.79□□□□□ -0.68
SS18-215ENST00000580642 RPL36AP83881 106 aaKnown RBP10.79□□□□□ -0.68
SS18-215ENST00000580642 C12orf74Q32Q52 190 aa10.79□□□□□ -0.68
SS18-215ENST00000580642 Q8N8P6 123 aa10.79□□□□□ -0.68
SS18-215ENST00000580642 SLC25A29Q8N8R3 303 aa10.79□□□□□ -0.68
SS18-215ENST00000580642 PRSS3P2Q8NHM4 247 aa10.79□□□□□ -0.68
SS18-215ENST00000580642 RPL36ALQ969Q0 106 aaKnown RBP10.79□□□□□ -0.68
SS18-215ENST00000580642 TNFRSF18Q9Y5U5 241 aa10.79□□□□□ -0.68
SS18-215ENST00000580642 TRBV27A0A0K0K1C4 114 aa10.78□□□□□ -0.68
SS18-215ENST00000580642 H3BNG1 76 aa10.78□□□□□ -0.68
SS18-215ENST00000580642 LINC00614P0C842 121 aa10.78□□□□□ -0.68
SS18-215ENST00000580642 POLR2KP53803 58 aaKnown RBP10.78□□□□□ -0.68
SS18-215ENST00000580642 Q6ZSN1 163 aa10.78□□□□□ -0.68
SS18-215ENST00000580642 SMIM2Q9BVW6 85 aa10.78□□□□□ -0.68
SS18-215ENST00000580642 TRBV7-3A0A075B6L6 115 aa10.77□□□□□ -0.69
SS18-215ENST00000580642 GAS8-AS1O95177 125 aa10.77□□□□□ -0.69
SS18-215ENST00000580642 G0S2P27469 103 aa10.77□□□□□ -0.69
SS18-215ENST00000580642 CRYBA4P53673 196 aa10.77□□□□□ -0.69
SS18-215ENST00000580642 NDUFA6P56556 154 aa10.77□□□□□ -0.69
SS18-215ENST00000580642 RPL39LQ96EH5 51 aaKnown RBP10.77□□□□□ -0.69
SS18-215ENST00000580642 TMEM70Q9BUB7 260 aa10.77□□□□□ -0.69
SS18-215ENST00000580642 IGLV2-18A0A075B6J9 118 aa10.76□□□□□ -0.69
SS18-215ENST00000580642 SDHAF1A6NFY7 115 aa10.76□□□□□ -0.69
SS18-215ENST00000580642 FA2HQ7L5A8 372 aa10.76□□□□□ -0.69
SS18-215ENST00000580642 DAZ4Q86SG3 579 aaKnown RBP10.76□□□□□ -0.69
SS18-215ENST00000580642 NIT1Q86X76 327 aa10.76□□□□□ -0.69
SS18-215ENST00000580642 NEXN-AS1Q8NBZ9 246 aa10.76□□□□□ -0.69
SS18-215ENST00000580642 PACRGQ96M98 296 aaPredicted RBP10.76□□□□□ -0.69
SS18-215ENST00000580642 KIR2DL4Q99706 377 aa10.76□□□□□ -0.69
SS18-215ENST00000580642 DAZ3Q9NR90 486 aaKnown RBP10.76□□□□□ -0.69
SS18-215ENST00000580642 AP5S1Q9NUS5 200 aa10.76□□□□□ -0.69
SS18-215ENST00000580642 TMA7Q9Y2S6 64 aaKnown RBP10.76□□□□□ -0.69
SS18-215ENST00000580642 C5orf52A6NGY3 159 aa10.75□□□□□ -0.69
SS18-215ENST00000580642 LINC01549A6NIU2 74 aa10.75□□□□□ -0.69
SS18-215ENST00000580642 I3L3M4 83 aa10.75□□□□□ -0.69
SS18-215ENST00000580642 HOXA5P20719 270 aa10.75□□□□□ -0.69
SS18-215ENST00000580642 SH2D6Q7Z4S9 175 aa10.75□□□□□ -0.69
SS18-215ENST00000580642 NACAE9PAV3 2078 aa10.74□□□□□ -0.69
SS18-215ENST00000580642 PAX4O43316 350 aa10.74□□□□□ -0.69
SS18-215ENST00000580642 IFI27P40305 119 aaPredicted RBP10.74□□□□□ -0.69
SS18-215ENST00000580642 TMEM97Q5BJF2 176 aa10.74□□□□□ -0.69
SS18-215ENST00000580642 DNAH9Q9NYC9 4486 aa10.74□□□□□ -0.69
SS18-215ENST00000580642 HUWE1Q7Z6Z7 4374 aaKnown RBP10.74□□□□□ -0.69
SS18-215ENST00000580642 TRAV26-1A0A087WT03 109 aa10.73□□□□□ -0.69
SS18-215ENST00000580642 LOC389332A0A1B0GUA5 103 aa10.73□□□□□ -0.69
SS18-215ENST00000580642 F5H768 121 aa10.73□□□□□ -0.69
SS18-215ENST00000580642 HSBP1O75506 76 aa10.73□□□□□ -0.69
SS18-215ENST00000580642 SERF1AO75920 110 aa10.73□□□□□ -0.69
SS18-215ENST00000580642 UBE2D3P61077 147 aa10.73□□□□□ -0.69
SS18-215ENST00000580642 UBE2D2P62837 147 aa10.73□□□□□ -0.69
SS18-215ENST00000580642 IQCJQ1A5X6 159 aa10.73□□□□□ -0.69
SS18-215ENST00000580642 ORMDL2Q53FV1 153 aa10.73□□□□□ -0.69
SS18-215ENST00000580642 TRAV10A0A0B4J240 114 aa10.72□□□□□ -0.69
SS18-215ENST00000580642 LINC00694P0DN24 101 aa10.72□□□□□ -0.69
SS18-215ENST00000580642 RNASEKQ6P5S7 137 aaKnown RBP10.72□□□□□ -0.69
SS18-215ENST00000580642 Q6ZTC4 211 aa10.72□□□□□ -0.69
SS18-215ENST00000580642 ZNRF2Q8NHG8 242 aa10.72□□□□□ -0.69
SS18-215ENST00000580642 URB1-AS1Q96HZ7 61 aa10.72□□□□□ -0.69
SS18-215ENST00000580642 P0DMU3 169 aa10.71□□□□□ -0.69
SS18-215ENST00000580642 FAM231AP0DMU4 169 aa10.71□□□□□ -0.69
SS18-215ENST00000580642 FAM231CP0DMU5 169 aa10.71□□□□□ -0.69
SS18-215ENST00000580642 LINC00310P59036 64 aa10.71□□□□□ -0.69
SS18-215ENST00000580642 LAGE3Q14657 143 aa10.71□□□□□ -0.69
SS18-215ENST00000580642 DEFB131BA0A096LNP1 70 aa10.7□□□□□ -0.7
SS18-215ENST00000580642 GYPEP15421 78 aa10.7□□□□□ -0.7
SS18-215ENST00000580642 NANOS2P60321 138 aaKnown RBP10.7□□□□□ -0.7
SS18-215ENST00000580642 SNRPEP62304 92 aaKnown RBP10.7□□□□□ -0.7
SS18-215ENST00000580642 MRPL23Q16540 153 aaKnown RBP10.7□□□□□ -0.7
SS18-215ENST00000580642 VSIG2Q96IQ7 327 aa10.7□□□□□ -0.7
SS18-215ENST00000580642 GTSF1LQ9H1H1 148 aa10.7□□□□□ -0.7
SS18-215ENST00000580642 MEGF8Q7Z7M0 2845 aa10.7□□□□□ -0.7
SS18-215ENST00000580642 GAGE12JA6NER3 117 aa10.69□□□□□ -0.7
SS18-215ENST00000580642 S100A2P29034 98 aa10.69□□□□□ -0.7
SS18-215ENST00000580642 FCER1GP30273 86 aa10.69□□□□□ -0.7
SS18-215ENST00000580642 GAGE1Q13065 139 aa10.69□□□□□ -0.7
SS18-215ENST00000580642 GAGE4Q13068 117 aa10.69□□□□□ -0.7
SS18-215ENST00000580642 GAGE5Q13069 117 aa10.69□□□□□ -0.7
SS18-215ENST00000580642 COTL1Q14019 142 aa10.69□□□□□ -0.7
SS18-215ENST00000580642 GAGE13Q4V321 117 aa10.69□□□□□ -0.7
SS18-215ENST00000580642 HIST3H2BBQ8N257 126 aa10.69□□□□□ -0.7
SS18-215ENST00000580642 TMEM18Q96B42 140 aa10.69□□□□□ -0.7
SS18-215ENST00000580642 ICOSQ9Y6W8 199 aa10.69□□□□□ -0.7
SS18-215ENST00000580642 HTN3P15516 51 aa10.68□□□□□ -0.7
SS18-215ENST00000580642 Q9UF83 564 aa10.68□□□□□ -0.7
SS18-215ENST00000580642 TENM3Q9P273 2699 aa10.68□□□□□ -0.7
SS18-215ENST00000580642 TSHBP01222 138 aa10.67□□□□□ -0.7
SS18-215ENST00000580642 HBDP02042 147 aa10.67□□□□□ -0.7
SS18-215ENST00000580642 TIRAPP58753 221 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 112.9 ms