RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 RPP21Q9H633 154 aaKnown RBP10.07□□□□□ -0.8
VPS39-210ENST00000568357 DAZ3Q9NR90 486 aaKnown RBP10.07□□□□□ -0.8
VPS39-210ENST00000568357 NTF3P20783 257 aa10.06□□□□□ -0.8
VPS39-210ENST00000568357 ERVFC1-1P60608 527 aa10.06□□□□□ -0.8
VPS39-210ENST00000568357 Q8N1X5 172 aa10.06□□□□□ -0.8
VPS39-210ENST00000568357 Q9HAA7 133 aa10.06□□□□□ -0.8
VPS39-210ENST00000568357 SRP19P09132 144 aaKnown RBP10.05□□□□□ -0.8
VPS39-210ENST00000568357 NIT1Q86X76 327 aa10.05□□□□□ -0.8
VPS39-210ENST00000568357 GTSF1Q8WW33 167 aa10.05□□□□□ -0.8
VPS39-210ENST00000568357 UBR4Q5T4S7 5183 aa10.04□□□□□ -0.8
VPS39-210ENST00000568357 M0QY20 66 aa10.04□□□□□ -0.8
VPS39-210ENST00000568357 EREGO14944 169 aa10.04□□□□□ -0.8
VPS39-210ENST00000568357 NDUFS6O75380 124 aaKnown RBP10.04□□□□□ -0.8
VPS39-210ENST00000568357 MGPP08493 103 aa10.04□□□□□ -0.8
VPS39-210ENST00000568357 CTRLP40313 264 aa10.04□□□□□ -0.8
VPS39-210ENST00000568357 WDR73Q6P4I2 378 aa10.04□□□□□ -0.8
VPS39-210ENST00000568357 TEX261Q6UWH6 196 aa10.04□□□□□ -0.8
VPS39-210ENST00000568357 PGPEP1Q9NXJ5 209 aa10.04□□□□□ -0.8
VPS39-210ENST00000568357 TRBV6-8A0A0A6YYG3 113 aa10.03□□□□□ -0.8
VPS39-210ENST00000568357 LRCOL1A6NCL2 159 aa10.03□□□□□ -0.8
VPS39-210ENST00000568357 LAGE3Q14657 143 aa10.03□□□□□ -0.8
VPS39-210ENST00000568357 SUMO4Q6EEV6 95 aa10.03□□□□□ -0.8
VPS39-210ENST00000568357 FAM231DQ6ZW35 169 aa10.03□□□□□ -0.8
VPS39-210ENST00000568357 SMIM7Q9BQ49 75 aa10.03□□□□□ -0.8
VPS39-210ENST00000568357 CNFNQ9BYD5 112 aa10.03□□□□□ -0.8
VPS39-210ENST00000568357 PSCAO43653 123 aa10.02□□□□□ -0.81
VPS39-210ENST00000568357 GATCO43716 136 aaKnown RBP10.02□□□□□ -0.81
VPS39-210ENST00000568357 TRGC1P0CF51 173 aa10.02□□□□□ -0.81
VPS39-210ENST00000568357 TWIST1Q15672 202 aa10.02□□□□□ -0.81
VPS39-210ENST00000568357 NTM-AS1Q6ZSK4 140 aa10.02□□□□□ -0.81
VPS39-210ENST00000568357 DNAJC30Q96LL9 226 aa10.02□□□□□ -0.81
VPS39-210ENST00000568357 ZNF727A8MUV8 499 aa10.01□□□□□ -0.81
VPS39-210ENST00000568357 C9JQL5 133 aa10.01□□□□□ -0.81
VPS39-210ENST00000568357 LINC01551Q86U37 167 aa10.01□□□□□ -0.81
VPS39-210ENST00000568357 URGCP-MRPS24S4R325 110 aa10.01□□□□□ -0.81
VPS39-210ENST00000568357 DMBT1Q9UGM3 2413 aaPredicted RBP10.01□□□□□ -0.81
VPS39-210ENST00000568357 TRAV8-3A0A0A6YYJ7 113 aa10□□□□□ -0.81
VPS39-210ENST00000568357 TMEM262E9PQX1 116 aa10□□□□□ -0.81
VPS39-210ENST00000568357 SRSF3P84103 164 aaKnown RBP10□□□□□ -0.81
VPS39-210ENST00000568357 DPH3P1Q9H4G8 78 aa10□□□□□ -0.81
VPS39-210ENST00000568357 KLK12Q9UKR0 248 aa10□□□□□ -0.81
VPS39-210ENST00000568357 A0A087WX48 190 aa9.99□□□□□ -0.81
VPS39-210ENST00000568357 A8MWL6 223 aa9.99□□□□□ -0.81
VPS39-210ENST00000568357 H7C1H1 209 aa9.99□□□□□ -0.81
VPS39-210ENST00000568357 FOXA3P55318 350 aaPredicted RBP9.99□□□□□ -0.81
VPS39-210ENST00000568357 RASL11AQ6T310 242 aa9.99□□□□□ -0.81
VPS39-210ENST00000568357 PGLYRP4Q96LB8 373 aa9.99□□□□□ -0.81
VPS39-210ENST00000568357 TM2D2Q9BX73 214 aa9.99□□□□□ -0.81
VPS39-210ENST00000568357 CT83Q5H943 113 aa9.98□□□□□ -0.81
VPS39-210ENST00000568357 CDPF1Q6NVV7 123 aa9.98□□□□□ -0.81
VPS39-210ENST00000568357 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.98□□□□□ -0.81
VPS39-210ENST00000568357 CHCHD7Q9BUK0 85 aa9.98□□□□□ -0.81
VPS39-210ENST00000568357 WFDC2Q14508 124 aa9.97□□□□□ -0.81
VPS39-210ENST00000568357 MPV17L2Q567V2 206 aa9.97□□□□□ -0.81
VPS39-210ENST00000568357 KCNIP4Q6PIL6 250 aa9.97□□□□□ -0.81
VPS39-210ENST00000568357 UBE2WQ96B02 151 aa9.97□□□□□ -0.81
VPS39-210ENST00000568357 CHCHD5Q9BSY4 110 aa9.97□□□□□ -0.81
VPS39-210ENST00000568357 NIT2Q9NQR4 276 aa9.97□□□□□ -0.81
VPS39-210ENST00000568357 OSTCQ9NRP0 149 aa9.97□□□□□ -0.81
VPS39-210ENST00000568357 MYCBP2O75592 4640 aa9.97□□□□□ -0.81
VPS39-210ENST00000568357 TRAV26-2A0A0B4J265 109 aa9.96□□□□□ -0.82
VPS39-210ENST00000568357 KRTAP10-1P60331 282 aa9.96□□□□□ -0.82
VPS39-210ENST00000568357 ELOBQ15370 118 aa9.96□□□□□ -0.82
VPS39-210ENST00000568357 TMEM241Q24JQ0 296 aa9.96□□□□□ -0.82
VPS39-210ENST00000568357 TMEM97Q5BJF2 176 aa9.96□□□□□ -0.82
VPS39-210ENST00000568357 ATRAIDQ6UW56 229 aa9.96□□□□□ -0.82
VPS39-210ENST00000568357 Q8N814 137 aa9.96□□□□□ -0.82
VPS39-210ENST00000568357 Q8N976 141 aa9.96□□□□□ -0.82
VPS39-210ENST00000568357 GATD1Q8NB37 220 aa9.96□□□□□ -0.82
VPS39-210ENST00000568357 DEFB104AQ8WTQ1 72 aa9.96□□□□□ -0.82
VPS39-210ENST00000568357 TSKUQ8WUA8 353 aa9.96□□□□□ -0.82
VPS39-210ENST00000568357 RPL23P62829 140 aaKnown RBP9.95□□□□□ -0.82
VPS39-210ENST00000568357 GAGE6Q13070 117 aa9.95□□□□□ -0.82
VPS39-210ENST00000568357 PEA15Q15121 130 aa9.95□□□□□ -0.82
VPS39-210ENST00000568357 IQCJQ1A5X6 159 aa9.95□□□□□ -0.82
VPS39-210ENST00000568357 FAM74A3Q4VXF1 159 aa9.95□□□□□ -0.82
VPS39-210ENST00000568357 ENHOQ6UWT2 76 aa9.95□□□□□ -0.82
VPS39-210ENST00000568357 C15orf54Q8N8G6 183 aa9.95□□□□□ -0.82
VPS39-210ENST00000568357 TRBV25-1A0A075B6N4 114 aa9.94□□□□□ -0.82
VPS39-210ENST00000568357 IGKV2D-24A0A075B6R9 120 aa9.94□□□□□ -0.82
VPS39-210ENST00000568357 HIGD1CA8MV81 97 aa9.94□□□□□ -0.82
VPS39-210ENST00000568357 LECT2O14960 151 aa9.94□□□□□ -0.82
VPS39-210ENST00000568357 BAALCQ8WXS3 180 aa9.94□□□□□ -0.82
VPS39-210ENST00000568357 ISOC2Q96AB3 205 aa9.94□□□□□ -0.82
VPS39-210ENST00000568357 GFRA4Q9GZZ7 299 aa9.94□□□□□ -0.82
VPS39-210ENST00000568357 V9GYV3 84 aa9.94□□□□□ -0.82
VPS39-210ENST00000568357 IGHV1-24A0A0C4DH33 117 aa9.93□□□□□ -0.82
VPS39-210ENST00000568357 FAM231BA6NCW3 169 aa9.93□□□□□ -0.82
VPS39-210ENST00000568357 ANGP03950 147 aaKnown RBP9.93□□□□□ -0.82
VPS39-210ENST00000568357 GCSHP23434 173 aa9.93□□□□□ -0.82
VPS39-210ENST00000568357 RBX1P62877 108 aa9.93□□□□□ -0.82
VPS39-210ENST00000568357 SMIM15Q7Z3B0 74 aa9.93□□□□□ -0.82
VPS39-210ENST00000568357 RMI2Q96E14 147 aa9.93□□□□□ -0.82
VPS39-210ENST00000568357 RPL39LQ96EH5 51 aaKnown RBP9.93□□□□□ -0.82
VPS39-210ENST00000568357 SMDT1Q9H4I9 107 aa9.93□□□□□ -0.82
VPS39-210ENST00000568357 COX11Q9Y6N1 276 aa9.93□□□□□ -0.82
VPS39-210ENST00000568357 IGLV5-52A0A0A0MRZ9 124 aa9.92□□□□□ -0.82
VPS39-210ENST00000568357 A0A1B0GUT8 65 aa9.92□□□□□ -0.82
VPS39-210ENST00000568357 PKIAP61925 76 aa9.92□□□□□ -0.82
VPS39-210ENST00000568357 Q0VG73 95 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 247 ms