RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 AP1S3Q96PC3 154 aa11.22□□□□□ -0.61
CLK3-210ENST00000563112 BIN3Q9NQY0 253 aa11.22□□□□□ -0.61
CLK3-210ENST00000563112 XKRY2A2RUG3 117 aa11.21□□□□□ -0.61
CLK3-210ENST00000563112 BCL2P10415 239 aa11.21□□□□□ -0.61
CLK3-210ENST00000563112 TAGLN2P37802 199 aaKnown RBP11.21□□□□□ -0.61
CLK3-210ENST00000563112 XGP55808 180 aa11.21□□□□□ -0.61
CLK3-210ENST00000563112 NEXN-AS1Q8NBZ9 246 aa11.21□□□□□ -0.61
CLK3-210ENST00000563112 TPPP3Q9BW30 176 aa11.21□□□□□ -0.61
CLK3-210ENST00000563112 VAX2Q9UIW0 290 aa11.21□□□□□ -0.61
CLK3-210ENST00000563112 EPM2AB3EWF7 344 aa11.2□□□□□ -0.62
CLK3-210ENST00000563112 TMEM262E9PQX1 116 aa11.2□□□□□ -0.62
CLK3-210ENST00000563112 IGLV2-8P01709 118 aa11.2□□□□□ -0.62
CLK3-210ENST00000563112 SLC7A5P1Q8MH63 180 aa11.2□□□□□ -0.62
CLK3-210ENST00000563112 FER1L6-AS1Q8NA97 138 aa11.2□□□□□ -0.62
CLK3-210ENST00000563112 KLK12Q9UKR0 248 aa11.2□□□□□ -0.62
CLK3-210ENST00000563112 TRBV6-8A0A0A6YYG3 113 aa11.19□□□□□ -0.62
CLK3-210ENST00000563112 LINC00862A6NCI5 91 aa11.19□□□□□ -0.62
CLK3-210ENST00000563112 C19orf71A6NCJ1 209 aa11.19□□□□□ -0.62
CLK3-210ENST00000563112 P01737 135 aa11.19□□□□□ -0.62
CLK3-210ENST00000563112 CACNG7P62955 275 aa11.19□□□□□ -0.62
CLK3-210ENST00000563112 TMEM97Q5BJF2 176 aa11.19□□□□□ -0.62
CLK3-210ENST00000563112 IGKV2D-24A0A075B6R9 120 aa11.18□□□□□ -0.62
CLK3-210ENST00000563112 RBFOX3A6NFN3 312 aa11.18□□□□□ -0.62
CLK3-210ENST00000563112 IGLC6P0CF74 106 aa11.18□□□□□ -0.62
CLK3-210ENST00000563112 GZMBP10144 247 aa11.18□□□□□ -0.62
CLK3-210ENST00000563112 PKIAP61925 76 aa11.18□□□□□ -0.62
CLK3-210ENST00000563112 UBE2WQ96B02 151 aa11.18□□□□□ -0.62
CLK3-210ENST00000563112 F2Z2F3 143 aa11.17□□□□□ -0.62
CLK3-210ENST00000563112 Q0VG73 95 aa11.17□□□□□ -0.62
CLK3-210ENST00000563112 FRZBQ92765 325 aa11.17□□□□□ -0.62
CLK3-210ENST00000563112 TMEM70Q9BUB7 260 aa11.17□□□□□ -0.62
CLK3-210ENST00000563112 KIF25-AS1Q9Y6Z4 181 aa11.17□□□□□ -0.62
CLK3-210ENST00000563112 H7C1H1 209 aa11.16□□□□□ -0.62
CLK3-210ENST00000563112 LECT2O14960 151 aa11.16□□□□□ -0.62
CLK3-210ENST00000563112 MGPP08493 103 aa11.16□□□□□ -0.62
CLK3-210ENST00000563112 BAALCQ8WXS3 180 aa11.16□□□□□ -0.62
CLK3-210ENST00000563112 CHCHD5Q9BSY4 110 aa11.16□□□□□ -0.62
CLK3-210ENST00000563112 TRBV20OR9-2A0A075B6H5 130 aa11.15□□□□□ -0.62
CLK3-210ENST00000563112 BLOC1S1P78537 153 aa11.15□□□□□ -0.62
CLK3-210ENST00000563112 WFDC2Q14508 124 aa11.15□□□□□ -0.62
CLK3-210ENST00000563112 DNAJC30Q96LL9 226 aa11.15□□□□□ -0.62
CLK3-210ENST00000563112 CRPP02741 224 aa11.14□□□□□ -0.63
CLK3-210ENST00000563112 TRGC1P0CF51 173 aa11.14□□□□□ -0.63
CLK3-210ENST00000563112 Q8N976 141 aa11.14□□□□□ -0.63
CLK3-210ENST00000563112 NUDT10Q8NFP7 164 aa11.14□□□□□ -0.63
CLK3-210ENST00000563112 NUDT11Q96G61 164 aa11.14□□□□□ -0.63
CLK3-210ENST00000563112 LYZL1Q6UWQ5 148 aa11.13□□□□□ -0.63
CLK3-210ENST00000563112 C15orf54Q8N8G6 183 aa11.13□□□□□ -0.63
CLK3-210ENST00000563112 C1orf43Q9BWL3 253 aa11.13□□□□□ -0.63
CLK3-210ENST00000563112 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.12□□□□□ -0.63
CLK3-210ENST00000563112 M0QY20 66 aa11.12□□□□□ -0.63
CLK3-210ENST00000563112 ANGP03950 147 aaKnown RBP11.12□□□□□ -0.63
CLK3-210ENST00000563112 MPV17L2Q567V2 206 aa11.12□□□□□ -0.63
CLK3-210ENST00000563112 Q5VSD8 79 aa11.12□□□□□ -0.63
CLK3-210ENST00000563112 WDR73Q6P4I2 378 aa11.12□□□□□ -0.63
CLK3-210ENST00000563112 ATRAIDQ6UW56 229 aa11.12□□□□□ -0.63
CLK3-210ENST00000563112 TRBV25-1A0A075B6N4 114 aa11.11□□□□□ -0.63
CLK3-210ENST00000563112 FAM229AH3BQW9 127 aa11.11□□□□□ -0.63
CLK3-210ENST00000563112 SMR3BP02814 79 aaPredicted RBP11.11□□□□□ -0.63
CLK3-210ENST00000563112 NTF3P20783 257 aa11.11□□□□□ -0.63
CLK3-210ENST00000563112 SUMO4Q6EEV6 95 aa11.11□□□□□ -0.63
CLK3-210ENST00000563112 ALKAL2Q6UX46 152 aa11.11□□□□□ -0.63
CLK3-210ENST00000563112 DPH3P1Q9H4G8 78 aa11.11□□□□□ -0.63
CLK3-210ENST00000563112 RASL11AQ6T310 242 aa11.1□□□□□ -0.63
CLK3-210ENST00000563112 ENHOQ6UWT2 76 aa11.1□□□□□ -0.63
CLK3-210ENST00000563112 NTM-AS1Q6ZSK4 140 aa11.1□□□□□ -0.63
CLK3-210ENST00000563112 COMMD7Q86VX2 200 aa11.1□□□□□ -0.63
CLK3-210ENST00000563112 OCC1Q8TAD7 63 aa11.1□□□□□ -0.63
CLK3-210ENST00000563112 RPP21Q9H633 154 aaKnown RBP11.1□□□□□ -0.63
CLK3-210ENST00000563112 FAT1Q14517 4588 aa11.09□□□□□ -0.63
CLK3-210ENST00000563112 IGHV1-24A0A0C4DH33 117 aa11.09□□□□□ -0.63
CLK3-210ENST00000563112 TMEM250H0YL14 139 aa11.09□□□□□ -0.63
CLK3-210ENST00000563112 INAFM2P0DMQ5 153 aa11.09□□□□□ -0.63
CLK3-210ENST00000563112 GAGE6Q13070 117 aa11.09□□□□□ -0.63
CLK3-210ENST00000563112 TWIST1Q15672 202 aa11.09□□□□□ -0.63
CLK3-210ENST00000563112 C14orf177Q52M58 125 aa11.09□□□□□ -0.63
CLK3-210ENST00000563112 RNASE7Q9H1E1 156 aaKnown RBP11.09□□□□□ -0.63
CLK3-210ENST00000563112 VPS13BQ7Z7G8 4022 aa11.08□□□□□ -0.64
CLK3-210ENST00000563112 DNAH8Q96JB1 4490 aa11.08□□□□□ -0.64
CLK3-210ENST00000563112 CTRLP40313 264 aa11.08□□□□□ -0.64
CLK3-210ENST00000563112 HAMPP81172 84 aa11.08□□□□□ -0.64
CLK3-210ENST00000563112 MIAQ16674 131 aa11.08□□□□□ -0.64
CLK3-210ENST00000563112 IQCJQ1A5X6 159 aa11.08□□□□□ -0.64
CLK3-210ENST00000563112 NIT2Q9NQR4 276 aa11.08□□□□□ -0.64
CLK3-210ENST00000563112 SRRM2Q9UQ35 2752 aaKnown RBP11.08□□□□□ -0.64
CLK3-210ENST00000563112 K7EN84 100 aa11.07□□□□□ -0.64
CLK3-210ENST00000563112 RBX1P62877 108 aa11.07□□□□□ -0.64
CLK3-210ENST00000563112 SMIM15Q7Z3B0 74 aa11.07□□□□□ -0.64
CLK3-210ENST00000563112 FAM30AQ9NZY2 134 aa11.07□□□□□ -0.64
CLK3-210ENST00000563112 GATCO43716 136 aaKnown RBP11.06□□□□□ -0.64
CLK3-210ENST00000563112 CEBPGP53567 150 aa11.06□□□□□ -0.64
CLK3-210ENST00000563112 LYPD6BQ8NI32 183 aa11.06□□□□□ -0.64
CLK3-210ENST00000563112 CNFNQ9BYD5 112 aa11.06□□□□□ -0.64
CLK3-210ENST00000563112 UQCC3Q6UW78 93 aa11.05□□□□□ -0.64
CLK3-210ENST00000563112 TMEM243Q9BU79 118 aa11.05□□□□□ -0.64
CLK3-210ENST00000563112 EIF5A2Q9GZV4 153 aaKnown RBP11.05□□□□□ -0.64
CLK3-210ENST00000563112 A8MWL6 223 aa11.04□□□□□ -0.64
CLK3-210ENST00000563112 HLA-DQA1P01909 254 aa11.04□□□□□ -0.64
CLK3-210ENST00000563112 LINC00269Q8N2A0 174 aa11.04□□□□□ -0.64
CLK3-210ENST00000563112 PGLYRP4Q96LB8 373 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms