RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 SMKR1H3BMG3 65 aa6.72□□□□□ -1.33
CUX1-216ENST00000558469 H7C1H1 209 aa6.72□□□□□ -1.33
CUX1-216ENST00000558469 M0QY20 66 aa6.72□□□□□ -1.33
CUX1-216ENST00000558469 GAS8-AS1O95177 125 aa6.72□□□□□ -1.33
CUX1-216ENST00000558469 NCR2O95944 276 aa6.72□□□□□ -1.33
CUX1-216ENST00000558469 HLA-DQA1P01909 254 aa6.72□□□□□ -1.33
CUX1-216ENST00000558469 APCSP02743 223 aa6.72□□□□□ -1.33
CUX1-216ENST00000558469 GYPEP15421 78 aa6.72□□□□□ -1.33
CUX1-216ENST00000558469 CKS2P33552 79 aa6.72□□□□□ -1.33
CUX1-216ENST00000558469 RHOHQ15669 191 aa6.72□□□□□ -1.33
CUX1-216ENST00000558469 ZFAND6Q6FIF0 208 aa6.72□□□□□ -1.33
CUX1-216ENST00000558469 FRZBQ92765 325 aa6.72□□□□□ -1.33
CUX1-216ENST00000558469 MRAP2Q96G30 205 aa6.72□□□□□ -1.33
CUX1-216ENST00000558469 MRPL18Q9H0U6 180 aaKnown RBP6.72□□□□□ -1.33
CUX1-216ENST00000558469 Q9UF83 564 aa6.72□□□□□ -1.33
CUX1-216ENST00000558469 D6R8Y8 96 aa6.71□□□□□ -1.34
CUX1-216ENST00000558469 NUDT3O95989 172 aa6.71□□□□□ -1.34
CUX1-216ENST00000558469 MT-ND6P03923 174 aa6.71□□□□□ -1.34
CUX1-216ENST00000558469 FABP9Q0Z7S8 132 aa6.71□□□□□ -1.34
CUX1-216ENST00000558469 KIAA1644Q3SXP7 199 aa6.71□□□□□ -1.34
CUX1-216ENST00000558469 RPL39LQ96EH5 51 aaKnown RBP6.71□□□□□ -1.34
CUX1-216ENST00000558469 NIT2Q9NQR4 276 aa6.71□□□□□ -1.34
CUX1-216ENST00000558469 KLK5Q9Y337 293 aaPredicted RBP6.71□□□□□ -1.34
CUX1-216ENST00000558469 TRAPPC1Q9Y5R8 145 aa6.71□□□□□ -1.34
CUX1-216ENST00000558469 TRBV10-1A0A0K0K1A3 114 aa6.7□□□□□ -1.34
CUX1-216ENST00000558469 GAGE12JA6NER3 117 aa6.7□□□□□ -1.34
CUX1-216ENST00000558469 H3BNG1 76 aa6.7□□□□□ -1.34
CUX1-216ENST00000558469 RAB5AP20339 215 aa6.7□□□□□ -1.34
CUX1-216ENST00000558469 RPS10P46783 165 aaKnown RBP6.7□□□□□ -1.34
CUX1-216ENST00000558469 GAGE1Q13065 139 aa6.7□□□□□ -1.34
CUX1-216ENST00000558469 GAGE4Q13068 117 aa6.7□□□□□ -1.34
CUX1-216ENST00000558469 GAGE5Q13069 117 aa6.7□□□□□ -1.34
CUX1-216ENST00000558469 GAGE13Q4V321 117 aa6.7□□□□□ -1.34
CUX1-216ENST00000558469 OR10J3Q5JRS4 329 aa6.7□□□□□ -1.34
CUX1-216ENST00000558469 Q8N3U1 123 aa6.7□□□□□ -1.34
CUX1-216ENST00000558469 NEXN-AS1Q8NBZ9 246 aa6.7□□□□□ -1.34
CUX1-216ENST00000558469 ZNRF2Q8NHG8 242 aa6.7□□□□□ -1.34
CUX1-216ENST00000558469 TNFRSF18Q9Y5U5 241 aa6.7□□□□□ -1.34
CUX1-216ENST00000558469 ICOSQ9Y6W8 199 aa6.7□□□□□ -1.34
CUX1-216ENST00000558469 TENM2Q9NT68 2774 aa6.69□□□□□ -1.34
CUX1-216ENST00000558469 TRBV7-3A0A075B6L6 115 aa6.69□□□□□ -1.34
CUX1-216ENST00000558469 A0A096LPF7 62 aa6.69□□□□□ -1.34
CUX1-216ENST00000558469 PPBPP02775 128 aa6.69□□□□□ -1.34
CUX1-216ENST00000558469 SRIP30626 198 aa6.69□□□□□ -1.34
CUX1-216ENST00000558469 RPL36AP83881 106 aaKnown RBP6.69□□□□□ -1.34
CUX1-216ENST00000558469 MRPL23Q16540 153 aaKnown RBP6.69□□□□□ -1.34
CUX1-216ENST00000558469 XP32Q5T750 250 aa6.69□□□□□ -1.34
CUX1-216ENST00000558469 ORMDL3Q8N138 153 aa6.69□□□□□ -1.34
CUX1-216ENST00000558469 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.69□□□□□ -1.34
CUX1-216ENST00000558469 C15orf53Q8NAA6 179 aa6.69□□□□□ -1.34
CUX1-216ENST00000558469 RPL36ALQ969Q0 106 aaKnown RBP6.69□□□□□ -1.34
CUX1-216ENST00000558469 DNAJC30Q96LL9 226 aa6.69□□□□□ -1.34
CUX1-216ENST00000558469 PRELID3AQ96N28 172 aa6.69□□□□□ -1.34
CUX1-216ENST00000558469 TNFRSF6BO95407 300 aa6.68□□□□□ -1.34
CUX1-216ENST00000558469 PPP1R17O96001 155 aa6.68□□□□□ -1.34
CUX1-216ENST00000558469 NRACQ8N912 160 aa6.68□□□□□ -1.34
CUX1-216ENST00000558469 ST20Q9HBF5 79 aa6.68□□□□□ -1.34
CUX1-216ENST00000558469 APLNQ9ULZ1 77 aa6.68□□□□□ -1.34
CUX1-216ENST00000558469 C3orf84H3BNL1 204 aa6.67□□□□□ -1.34
CUX1-216ENST00000558469 NPYP01303 97 aa6.67□□□□□ -1.34
CUX1-216ENST00000558469 TRGC2P03986 189 aa6.67□□□□□ -1.34
CUX1-216ENST00000558469 LINC00694P0DN24 101 aa6.67□□□□□ -1.34
CUX1-216ENST00000558469 UBE2D3P61077 147 aa6.67□□□□□ -1.34
CUX1-216ENST00000558469 UBE2D2P62837 147 aa6.67□□□□□ -1.34
CUX1-216ENST00000558469 CASC10Q5T4H9 136 aa6.67□□□□□ -1.34
CUX1-216ENST00000558469 NEGR1Q7Z3B1 354 aa6.67□□□□□ -1.34
CUX1-216ENST00000558469 ATP6V0E2Q8NHE4 81 aa6.67□□□□□ -1.34
CUX1-216ENST00000558469 IGHV3-38A0A0C4DH36 116 aa6.66□□□□□ -1.34
CUX1-216ENST00000558469 TRBV6-5A0A0K0K1A5 114 aa6.66□□□□□ -1.34
CUX1-216ENST00000558469 SDHAF1A6NFY7 115 aa6.66□□□□□ -1.34
CUX1-216ENST00000558469 SUMO2P61956 95 aaKnown RBP6.66□□□□□ -1.34
CUX1-216ENST00000558469 SH2D6Q7Z4S9 175 aa6.66□□□□□ -1.34
CUX1-216ENST00000558469 DEFB104AQ8WTQ1 72 aa6.66□□□□□ -1.34
CUX1-216ENST00000558469 C20orf78Q9BR46 151 aa6.66□□□□□ -1.34
CUX1-216ENST00000558469 ALKBH7Q9BT30 221 aaPredicted RBP6.66□□□□□ -1.34
CUX1-216ENST00000558469 LAMTOR2Q9Y2Q5 125 aa6.66□□□□□ -1.34
CUX1-216ENST00000558469 DYNC2H1Q8NCM8 4307 aaKnown RBP6.65□□□□□ -1.34
CUX1-216ENST00000558469 LOC389332A0A1B0GUA5 103 aa6.65□□□□□ -1.34
CUX1-216ENST00000558469 PHOX2AO14813 284 aa6.65□□□□□ -1.34
CUX1-216ENST00000558469 PMCHP20382 165 aa6.65□□□□□ -1.34
CUX1-216ENST00000558469 POLR2KP53803 58 aaKnown RBP6.65□□□□□ -1.34
CUX1-216ENST00000558469 TCTAP57738 103 aa6.65□□□□□ -1.34
CUX1-216ENST00000558469 DAZ4Q86SG3 579 aaKnown RBP6.65□□□□□ -1.34
CUX1-216ENST00000558469 TMEM70Q9BUB7 260 aa6.65□□□□□ -1.34
CUX1-216ENST00000558469 GTSF1LQ9H1H1 148 aa6.65□□□□□ -1.34
CUX1-216ENST00000558469 MAP1LC3AQ9H492 121 aa6.65□□□□□ -1.34
CUX1-216ENST00000558469 DAZ3Q9NR90 486 aaKnown RBP6.65□□□□□ -1.34
CUX1-216ENST00000558469 I3L3M4 83 aa6.64□□□□□ -1.35
CUX1-216ENST00000558469 VCYO14598 125 aa6.64□□□□□ -1.35
CUX1-216ENST00000558469 ESRGQ1W209 222 aa6.64□□□□□ -1.35
CUX1-216ENST00000558469 LYPD5Q6UWN5 251 aa6.64□□□□□ -1.35
CUX1-216ENST00000558469 TRBV27A0A0K0K1C4 114 aa6.63□□□□□ -1.35
CUX1-216ENST00000558469 PRSS47A8MTI9 375 aa6.63□□□□□ -1.35
CUX1-216ENST00000558469 IFI27P40305 119 aaPredicted RBP6.63□□□□□ -1.35
CUX1-216ENST00000558469 RPL32P62910 135 aaKnown RBP6.63□□□□□ -1.35
CUX1-216ENST00000558469 SMIM2Q9BVW6 85 aa6.63□□□□□ -1.35
CUX1-216ENST00000558469 STARD9Q9P2P6 4700 aa6.63□□□□□ -1.35
CUX1-216ENST00000558469 EREGO14944 169 aa6.62□□□□□ -1.35
CUX1-216ENST00000558469 TSHBP01222 138 aa6.62□□□□□ -1.35
CUX1-216ENST00000558469 CCL18P55774 89 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms