RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 S100ZQ8WXG8 99 aa10.72□□□□□ -0.69
VPS29-204ENST00000548259 ZNF471Q9BX82 626 aaPredicted RBP10.72□□□□□ -0.69
VPS29-204ENST00000548259 PLAC8Q9NZF1 115 aa10.72□□□□□ -0.69
VPS29-204ENST00000548259 NDUFA13Q9P0J0 144 aa10.72□□□□□ -0.69
VPS29-204ENST00000548259 TNXBP22105 4242 aa10.71□□□□□ -0.69
VPS29-204ENST00000548259 IGLV10-54A0A075B6I4 117 aa10.71□□□□□ -0.69
VPS29-204ENST00000548259 UBE2G2P60604 165 aa10.71□□□□□ -0.69
VPS29-204ENST00000548259 ZNF674Q2M3X9 581 aa10.71□□□□□ -0.69
VPS29-204ENST00000548259 WDR73Q6P4I2 378 aa10.71□□□□□ -0.69
VPS29-204ENST00000548259 REG3GQ6UW15 175 aa10.71□□□□□ -0.69
VPS29-204ENST00000548259 LINC00299Q6ZSB3 139 aa10.71□□□□□ -0.69
VPS29-204ENST00000548259 GTSF1Q8WW33 167 aa10.71□□□□□ -0.69
VPS29-204ENST00000548259 VAX2Q9UIW0 290 aa10.71□□□□□ -0.69
VPS29-204ENST00000548259 IGHV1-24A0A0C4DH33 117 aa10.7□□□□□ -0.7
VPS29-204ENST00000548259 TRBV6-1A0A0K0K1D8 114 aa10.7□□□□□ -0.7
VPS29-204ENST00000548259 CHTF8P0CG12 524 aa10.7□□□□□ -0.7
VPS29-204ENST00000548259 SMIM17P0DL12 118 aa10.7□□□□□ -0.7
VPS29-204ENST00000548259 KIF25-AS1Q9Y6Z4 181 aa10.7□□□□□ -0.7
VPS29-204ENST00000548259 SPANXN1Q5VSR9 72 aa10.69□□□□□ -0.7
VPS29-204ENST00000548259 CFAP161Q6P656 301 aa10.69□□□□□ -0.7
VPS29-204ENST00000548259 A0A0J9YXV3 536 aa10.68□□□□□ -0.7
VPS29-204ENST00000548259 IQCJQ1A5X6 159 aa10.68□□□□□ -0.7
VPS29-204ENST00000548259 NTM-AS1Q6ZSK4 140 aa10.68□□□□□ -0.7
VPS29-204ENST00000548259 TCEAL7Q9BRU2 100 aa10.68□□□□□ -0.7
VPS29-204ENST00000548259 MARVELD1Q9BSK0 173 aa10.68□□□□□ -0.7
VPS29-204ENST00000548259 CTXND1A0A1B0GTU2 59 aa10.67□□□□□ -0.7
VPS29-204ENST00000548259 FAM74A7A6NL05 159 aa10.67□□□□□ -0.7
VPS29-204ENST00000548259 UPK1BO75841 260 aa10.67□□□□□ -0.7
VPS29-204ENST00000548259 PRR3P79522 188 aaKnown RBP10.67□□□□□ -0.7
VPS29-204ENST00000548259 CXCL1P09341 107 aa10.66□□□□□ -0.7
VPS29-204ENST00000548259 MAJINQ3KP22 176 aa10.66□□□□□ -0.7
VPS29-204ENST00000548259 OR10AG1Q8NH19 301 aa10.66□□□□□ -0.7
VPS29-204ENST00000548259 H7C1H1 209 aa10.65□□□□□ -0.7
VPS29-204ENST00000548259 NDUFS6O75380 124 aaKnown RBP10.65□□□□□ -0.7
VPS29-204ENST00000548259 GAS8-AS1O95177 125 aa10.65□□□□□ -0.7
VPS29-204ENST00000548259 LTAP01374 205 aa10.65□□□□□ -0.7
VPS29-204ENST00000548259 SPINK6Q6UWN8 80 aa10.65□□□□□ -0.7
VPS29-204ENST00000548259 BORCS7-ASMTA0A0B4J1R7 106 aa10.64□□□□□ -0.71
VPS29-204ENST00000548259 A0A1B0GUV1 79 aa10.64□□□□□ -0.71
VPS29-204ENST00000548259 RPS10P46783 165 aaKnown RBP10.64□□□□□ -0.71
VPS29-204ENST00000548259 RAB5CP51148 216 aa10.64□□□□□ -0.71
VPS29-204ENST00000548259 COX6A2Q02221 97 aa10.64□□□□□ -0.71
VPS29-204ENST00000548259 STOML3Q8TAV4 291 aa10.64□□□□□ -0.71
VPS29-204ENST00000548259 AP1S3Q96PC3 154 aa10.64□□□□□ -0.71
VPS29-204ENST00000548259 AQP10Q96PS8 301 aa10.64□□□□□ -0.71
VPS29-204ENST00000548259 TMEM243Q9BU79 118 aa10.64□□□□□ -0.71
VPS29-204ENST00000548259 PKIGQ9Y2B9 76 aa10.64□□□□□ -0.71
VPS29-204ENST00000548259 SLPIP03973 132 aa10.63□□□□□ -0.71
VPS29-204ENST00000548259 OR5AL1P0C617 328 aa10.63□□□□□ -0.71
VPS29-204ENST00000548259 AKR1C3P42330 323 aa10.63□□□□□ -0.71
VPS29-204ENST00000548259 SULT1A2P50226 295 aa10.63□□□□□ -0.71
VPS29-204ENST00000548259 STPG4Q8N801 248 aa10.63□□□□□ -0.71
VPS29-204ENST00000548259 C20orf203Q8NBC4 194 aa10.63□□□□□ -0.71
VPS29-204ENST00000548259 LINC00474Q9P2X8 69 aa10.63□□□□□ -0.71
VPS29-204ENST00000548259 IGKV2-24A0A0C4DH68 120 aa10.62□□□□□ -0.71
VPS29-204ENST00000548259 UBE2L6O14933 153 aa10.62□□□□□ -0.71
VPS29-204ENST00000548259 S100A9P06702 114 aaKnown RBP10.62□□□□□ -0.71
VPS29-204ENST00000548259 FHITP49789 147 aa10.62□□□□□ -0.71
VPS29-204ENST00000548259 DEFA1P59665 94 aa10.62□□□□□ -0.71
VPS29-204ENST00000548259 DEFA3P59666 94 aa10.62□□□□□ -0.71
VPS29-204ENST00000548259 KRTAP10-8P60410 259 aa10.62□□□□□ -0.71
VPS29-204ENST00000548259 AKR1C8PQ5T2L2 129 aa10.62□□□□□ -0.71
VPS29-204ENST00000548259 CST9LP1Q5W188 147 aa10.62□□□□□ -0.71
VPS29-204ENST00000548259 SNAI2O43623 268 aa10.61□□□□□ -0.71
VPS29-204ENST00000548259 INO80EQ8NBZ0 244 aaPredicted RBP10.61□□□□□ -0.71
VPS29-204ENST00000548259 LYPD6BQ8NI32 183 aa10.61□□□□□ -0.71
VPS29-204ENST00000548259 SSTP61278 116 aa10.6□□□□□ -0.71
VPS29-204ENST00000548259 ZNF726P1Q15940 193 aa10.6□□□□□ -0.71
VPS29-204ENST00000548259 SSBP4Q9BWG4 385 aaPredicted RBP10.6□□□□□ -0.71
VPS29-204ENST00000548259 MUC21A0A0G2JKD1 596 aa10.59□□□□□ -0.71
VPS29-204ENST00000548259 MUC21A0A140T8X8 626 aa10.59□□□□□ -0.71
VPS29-204ENST00000548259 ODF1Q14990 250 aa10.59□□□□□ -0.71
VPS29-204ENST00000548259 LCE2DQ5TA82 110 aaPredicted RBP10.59□□□□□ -0.71
VPS29-204ENST00000548259 IGLV4-60A0A075B6I1 120 aa10.58□□□□□ -0.72
VPS29-204ENST00000548259 MAP1LC3B2A6NCE7 125 aa10.58□□□□□ -0.72
VPS29-204ENST00000548259 MGPP08493 103 aa10.58□□□□□ -0.72
VPS29-204ENST00000548259 PRSS3P2Q8NHM4 247 aa10.58□□□□□ -0.72
VPS29-204ENST00000548259 MAP1LC3BQ9GZQ8 125 aa10.58□□□□□ -0.72
VPS29-204ENST00000548259 GAGE12HA6NDE8 117 aa10.57□□□□□ -0.72
VPS29-204ENST00000548259 RPL7L1Q6DKI1 246 aaKnown RBP10.57□□□□□ -0.72
VPS29-204ENST00000548259 Q6ZRP5 223 aa10.57□□□□□ -0.72
VPS29-204ENST00000548259 M0QY20 66 aa10.56□□□□□ -0.72
VPS29-204ENST00000548259 HIGD2BQ4VC39 106 aa10.56□□□□□ -0.72
VPS29-204ENST00000548259 BAGE2Q86Y30 109 aa10.56□□□□□ -0.72
VPS29-204ENST00000548259 C15orf56Q8N910 161 aa10.56□□□□□ -0.72
VPS29-204ENST00000548259 PGLYRP4Q96LB8 373 aa10.56□□□□□ -0.72
VPS29-204ENST00000548259 AMTP48728 403 aa10.55□□□□□ -0.72
VPS29-204ENST00000548259 NKX2-5P52952 324 aaPredicted RBP10.55□□□□□ -0.72
VPS29-204ENST00000548259 IFITM3Q01628 133 aa10.55□□□□□ -0.72
VPS29-204ENST00000548259 COTL1Q14019 142 aa10.55□□□□□ -0.72
VPS29-204ENST00000548259 GFRA4Q9GZZ7 299 aa10.55□□□□□ -0.72
VPS29-204ENST00000548259 FAM231BA6NCW3 169 aa10.54□□□□□ -0.72
VPS29-204ENST00000548259 RASL11AQ6T310 242 aa10.54□□□□□ -0.72
VPS29-204ENST00000548259 TPPP3Q9BW30 176 aa10.54□□□□□ -0.72
VPS29-204ENST00000548259 IGKV3OR2-268A0A0C4DH90 116 aa10.53□□□□□ -0.72
VPS29-204ENST00000548259 PFDN1O60925 122 aa10.53□□□□□ -0.72
VPS29-204ENST00000548259 SUMO4Q6EEV6 95 aa10.53□□□□□ -0.72
VPS29-204ENST00000548259 A0A096LNI7 61 aa10.52□□□□□ -0.73
VPS29-204ENST00000548259 GVQW2A0A096LPI5 108 aaPredicted RBP10.52□□□□□ -0.73
VPS29-204ENST00000548259 CACNG7P62955 275 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 102.4 ms