RNA–Protein interactions for RNA: ENST00000473295.2

SCN1A-205, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 544 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-205ENST00000473295 TRAV13-1A0A0B4J241 112 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 IGHV1-24A0A0C4DH33 117 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 LOC107986453A0A1B0GWG9 222 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 PRORSD1PA6NEY8 169 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 TMEM210A6NLX4 147 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 CPSF4LA6NMK7 179 aaKnown RBP-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 HCG22E2RYF7 251 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 E7EQ34 232 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 J3QRK9 145 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 PSMD12O00232 456 aaPredicted RBP-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 KPNA4O00629 521 aaPredicted RBP-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 BANF1O75531 89 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 MT-ND6P03923 174 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 CALB1P05937 261 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 CCDC172P0C7W6 258 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 IGLC6P0CF74 106 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 MT1HL1P0DM35 61 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 S100A4P26447 101 aaKnown RBP-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 ERP29P30040 261 aaKnown RBP-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 SRP14P37108 136 aaKnown RBP-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 OMPP47874 163 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 ARF6P62330 175 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 DEFA5Q01523 94 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 HSD52Q0P140 79 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 MED21Q13503 144 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 KRTAP19-6Q3LI70 58 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 S100A7L2Q5SY68 101 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 C10orf113Q5VZT2 155 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 Q6JHZ5 121 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 ATP11AUNQ6ZP68 121 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 LINC00305Q7Z4B0 112 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 TMED4Q7Z7H5 227 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 WFDC13Q8IUB5 93 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 SYCE1Q8N0S2 351 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 WFDC9Q8NEX5 89 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 NUP35Q8NFH5 326 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 FDCSPQ8NFU4 85 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 OR8J3Q8NGG0 315 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 OR5H6Q8NGV6 325 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 FAM172AQ8WUF8 416 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 THEM6Q8WUY1 208 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 C4orf3Q8WVX3 66 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 CCDC115Q96NT0 180 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 DSCR8Q96T75 97 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 GINS3Q9BRX5 216 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 EFCAB11Q9BUY7 163 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 SH3BGRL3Q9H299 93 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 TCEAL2Q9H3H9 227 aaPredicted RBP-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 NAA60Q9H7X0 242 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 NDUFA4L2Q9NRX3 87 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 C19orf12Q9NSK7 152 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 TMEM242Q9NWH2 141 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 BET1LQ9NYM9 111 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 SMPXQ9UHP9 88 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 TPRKBQ9Y3C4 175 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 MED31Q9Y3C7 131 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 LINC01558Q9Y6Z2 57 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 SPTBN5Q9NRC6 3674 aaKnown RBP-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 TEX15Q9BXT5 2789 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 ZFHX3Q15911 3703 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 KDM6AO15550 1401 aaPredicted RBP-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 PKDREJQ9NTG1 2253 aa-0.64□□□□□ -2.51
SCN1A-205ENST00000473295 MYH9P35579 1960 aaKnown RBP-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 PIK3C2AO00443 1686 aa-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 QRICH2Q9H0J4 1663 aa-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 PLEKHH2Q8IVE3 1493 aa-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 WDR7Q9Y4E6 1490 aa-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 SPTBN2O15020 2390 aa-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 A0A096LPI6 279 aa-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 IGLC7A0M8Q6 106 aa-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 F2Z2F3 143 aa-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 ZNF670-ZNF695F2Z2N8 137 aa-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 CCDC179H3BU77 68 aa-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 NIPSNAP2O75323 286 aa-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 TNFSF15O95150 251 aa-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 NDUFA3O95167 84 aa-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 IFNA1P01562 189 aa-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 TNNC2P02585 160 aa-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 APOA1P02647 267 aa-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 APOEP02649 317 aa-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 S100A9P06702 114 aaKnown RBP-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 NBEAP1P0C6P0 100 aa-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 PIRTP0C851 137 aa-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 PET100P0DJ07 73 aa-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 FABP2P12104 132 aa-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 COX4I1P13073 169 aa-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 OGNP20774 298 aaKnown RBP-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 HSD11B1P28845 292 aa-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 RPL35P42766 123 aaKnown RBP-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 CDKN2CP42773 168 aa-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 GNG10P50151 68 aa-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 NDUFA6P56556 154 aa-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 DEFB1P60022 68 aa-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 HIST1H3AP68431 136 aa-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 H3F3AP84243 136 aa-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 SSBP1Q04837 148 aaKnown RBP-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 SPCS2Q15005 226 aa-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 CLLU1Q5K131 121 aa-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 C2orf82Q6UX34 121 aa-0.65□□□□□ -2.51
Retrieved 100 of 20,778 RNA–protein pairs in 100.1 ms