RNA–Protein interactions for RNA: ENST00000438518.5

HDAC6-208, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 610 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-208ENST00000438518 NEGR1Q7Z3B1 354 aa12.81□□□□□ -0.36
HDAC6-208ENST00000438518 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.81□□□□□ -0.36
HDAC6-208ENST00000438518 CSMD3Q7Z407 3707 aa12.81□□□□□ -0.36
HDAC6-208ENST00000438518 STARD9Q9P2P6 4700 aa12.8□□□□□ -0.36
HDAC6-208ENST00000438518 LINC00694P0DN24 101 aa12.8□□□□□ -0.36
HDAC6-208ENST00000438518 MRPL51Q4U2R6 128 aaKnown RBP12.8□□□□□ -0.36
HDAC6-208ENST00000438518 TMEM136Q6ZRR5 245 aa12.8□□□□□ -0.36
HDAC6-208ENST00000438518 CBLN2Q8IUK8 224 aa12.8□□□□□ -0.36
HDAC6-208ENST00000438518 NEXN-AS1Q8NBZ9 246 aa12.8□□□□□ -0.36
HDAC6-208ENST00000438518 YPEL4Q96NS1 127 aa12.8□□□□□ -0.36
HDAC6-208ENST00000438518 TGIF2-C20orf24A0A0A6YYL0 155 aa12.79□□□□□ -0.36
HDAC6-208ENST00000438518 TNFRSF18Q9Y5U5 241 aa12.79□□□□□ -0.36
HDAC6-208ENST00000438518 TRBV6-5A0A0K0K1A5 114 aa12.78□□□□□ -0.36
HDAC6-208ENST00000438518 LOC100131303A0A0U1RQF7 123 aa12.78□□□□□ -0.36
HDAC6-208ENST00000438518 GAGE12JA6NER3 117 aa12.78□□□□□ -0.36
HDAC6-208ENST00000438518 CKS2P33552 79 aa12.78□□□□□ -0.36
HDAC6-208ENST00000438518 GAGE1Q13065 139 aa12.78□□□□□ -0.36
HDAC6-208ENST00000438518 GAGE4Q13068 117 aa12.78□□□□□ -0.36
HDAC6-208ENST00000438518 GAGE5Q13069 117 aa12.78□□□□□ -0.36
HDAC6-208ENST00000438518 GAGE13Q4V321 117 aa12.78□□□□□ -0.36
HDAC6-208ENST00000438518 ZNRF2Q8NHG8 242 aa12.78□□□□□ -0.36
HDAC6-208ENST00000438518 TRAV26-2A0A0B4J265 109 aa12.77□□□□□ -0.37
HDAC6-208ENST00000438518 PHOX2AO14813 284 aa12.77□□□□□ -0.37
HDAC6-208ENST00000438518 P0DMU3 169 aa12.77□□□□□ -0.37
HDAC6-208ENST00000438518 FAM231AP0DMU4 169 aa12.77□□□□□ -0.37
HDAC6-208ENST00000438518 FAM231CP0DMU5 169 aa12.77□□□□□ -0.37
HDAC6-208ENST00000438518 TIRAPP58753 221 aa12.77□□□□□ -0.37
HDAC6-208ENST00000438518 UBE2D3P61077 147 aa12.77□□□□□ -0.37
HDAC6-208ENST00000438518 UBE2D2P62837 147 aa12.77□□□□□ -0.37
HDAC6-208ENST00000438518 OR10J3Q5JRS4 329 aa12.77□□□□□ -0.37
HDAC6-208ENST00000438518 DAZ4Q86SG3 579 aaKnown RBP12.77□□□□□ -0.37
HDAC6-208ENST00000438518 ORMDL3Q8N138 153 aa12.77□□□□□ -0.37
HDAC6-208ENST00000438518 ATP6V0E2Q8NHE4 81 aa12.77□□□□□ -0.37
HDAC6-208ENST00000438518 DAZ3Q9NR90 486 aaKnown RBP12.77□□□□□ -0.37
HDAC6-208ENST00000438518 LAMTOR2Q9Y2Q5 125 aa12.77□□□□□ -0.37
HDAC6-208ENST00000438518 CCL18P55774 89 aa12.76□□□□□ -0.37
HDAC6-208ENST00000438518 TMEM97Q5BJF2 176 aa12.76□□□□□ -0.37
HDAC6-208ENST00000438518 APCSP02743 223 aa12.75□□□□□ -0.37
HDAC6-208ENST00000438518 PLECQ15149 4684 aaKnown RBP12.75□□□□□ -0.37
HDAC6-208ENST00000438518 D6R8Y8 96 aa12.74□□□□□ -0.37
HDAC6-208ENST00000438518 C20orf78Q9BR46 151 aa12.74□□□□□ -0.37
HDAC6-208ENST00000438518 GTSF1LQ9H1H1 148 aa12.74□□□□□ -0.37
HDAC6-208ENST00000438518 ST20Q9HBF5 79 aa12.74□□□□□ -0.37
HDAC6-208ENST00000438518 Q9UF83 564 aa12.74□□□□□ -0.37
HDAC6-208ENST00000438518 NRACQ8N912 160 aa12.73□□□□□ -0.37
HDAC6-208ENST00000438518 RPL39LQ96EH5 51 aaKnown RBP12.73□□□□□ -0.37
HDAC6-208ENST00000438518 MRPL18Q9H0U6 180 aaKnown RBP12.73□□□□□ -0.37
HDAC6-208ENST00000438518 TRAPPC1Q9Y5R8 145 aa12.73□□□□□ -0.37
HDAC6-208ENST00000438518 NCR2O95944 276 aa12.72□□□□□ -0.37
HDAC6-208ENST00000438518 RPS10P46783 165 aaKnown RBP12.72□□□□□ -0.37
HDAC6-208ENST00000438518 SUMO2P61956 95 aaKnown RBP12.72□□□□□ -0.37
HDAC6-208ENST00000438518 RPL32P62910 135 aaKnown RBP12.72□□□□□ -0.37
HDAC6-208ENST00000438518 LGALS9CQ6DKI2 356 aa12.72□□□□□ -0.37
HDAC6-208ENST00000438518 LYPD5Q6UWN5 251 aa12.72□□□□□ -0.37
HDAC6-208ENST00000438518 PRELID3AQ96N28 172 aa12.72□□□□□ -0.37
HDAC6-208ENST00000438518 SDHAF1A6NFY7 115 aa12.71□□□□□ -0.37
HDAC6-208ENST00000438518 SMKR1H3BMG3 65 aa12.71□□□□□ -0.37
HDAC6-208ENST00000438518 TNFRSF6BO95407 300 aa12.71□□□□□ -0.37
HDAC6-208ENST00000438518 FABP9Q0Z7S8 132 aa12.7□□□□□ -0.38
HDAC6-208ENST00000438518 ESRGQ1W209 222 aa12.7□□□□□ -0.38
HDAC6-208ENST00000438518 UPK3BQ9BT76 320 aa12.7□□□□□ -0.38
HDAC6-208ENST00000438518 TMEM70Q9BUB7 260 aa12.7□□□□□ -0.38
HDAC6-208ENST00000438518 MRPS16Q9Y3D3 137 aaKnown RBP12.7□□□□□ -0.38
HDAC6-208ENST00000438518 TRBV27A0A0K0K1C4 114 aa12.69□□□□□ -0.38
HDAC6-208ENST00000438518 COLCA2A8K830 154 aa12.69□□□□□ -0.38
HDAC6-208ENST00000438518 PRSS47A8MTI9 375 aa12.69□□□□□ -0.38
HDAC6-208ENST00000438518 I3L3M4 83 aa12.69□□□□□ -0.38
HDAC6-208ENST00000438518 VCYO14598 125 aa12.69□□□□□ -0.38
HDAC6-208ENST00000438518 TCAPO15273 167 aa12.69□□□□□ -0.38
HDAC6-208ENST00000438518 SCO1O75880 301 aa12.69□□□□□ -0.38
HDAC6-208ENST00000438518 GAS8-AS1O95177 125 aa12.69□□□□□ -0.38
HDAC6-208ENST00000438518 POLR2KP53803 58 aaKnown RBP12.69□□□□□ -0.38
HDAC6-208ENST00000438518 LELP1Q5T871 98 aa12.69□□□□□ -0.38
HDAC6-208ENST00000438518 UBE2DNLQ8IWF7 75 aa12.69□□□□□ -0.38
HDAC6-208ENST00000438518 NPYP01303 97 aa12.68□□□□□ -0.38
HDAC6-208ENST00000438518 COTL1Q14019 142 aa12.68□□□□□ -0.38
HDAC6-208ENST00000438518 MAP1LC3AQ9H492 121 aa12.68□□□□□ -0.38
HDAC6-208ENST00000438518 LINC00588Q9Y4M8 146 aa12.68□□□□□ -0.38
HDAC6-208ENST00000438518 TRBV6-8A0A0A6YYG3 113 aa12.67□□□□□ -0.38
HDAC6-208ENST00000438518 TRAV8-6A0A0B4J262 113 aa12.67□□□□□ -0.38
HDAC6-208ENST00000438518 RAB5AP20339 215 aa12.67□□□□□ -0.38
HDAC6-208ENST00000438518 KIR2DL4Q99706 377 aa12.67□□□□□ -0.38
HDAC6-208ENST00000438518 TRBV25-1A0A075B6N4 114 aa12.66□□□□□ -0.38
HDAC6-208ENST00000438518 PMCHP20382 165 aa12.66□□□□□ -0.38
HDAC6-208ENST00000438518 PKIAP61925 76 aa12.66□□□□□ -0.38
HDAC6-208ENST00000438518 LINC00476Q8WZB0 136 aa12.66□□□□□ -0.38
HDAC6-208ENST00000438518 ALKBH7Q9BT30 221 aaPredicted RBP12.66□□□□□ -0.38
HDAC6-208ENST00000438518 SMIM2Q9BVW6 85 aa12.66□□□□□ -0.38
HDAC6-208ENST00000438518 IGHV3-38A0A0C4DH36 116 aa12.65□□□□□ -0.38
HDAC6-208ENST00000438518 K7EMI3 77 aa12.65□□□□□ -0.38
HDAC6-208ENST00000438518 IQCJQ1A5X6 159 aa12.65□□□□□ -0.38
HDAC6-208ENST00000438518 KIAA1644Q3SXP7 199 aa12.65□□□□□ -0.38
HDAC6-208ENST00000438518 IGHV1-24A0A0C4DH33 117 aa12.64□□□□□ -0.39
HDAC6-208ENST00000438518 TENM2Q9NT68 2774 aa12.64□□□□□ -0.39
HDAC6-208ENST00000438518 NXT2Q9NPJ8 142 aaKnown RBP12.63□□□□□ -0.39
HDAC6-208ENST00000438518 K7EP13 123 aa12.62□□□□□ -0.39
HDAC6-208ENST00000438518 NTM-AS1Q6ZSK4 140 aa12.62□□□□□ -0.39
HDAC6-208ENST00000438518 CHCHD7Q9BUK0 85 aa12.62□□□□□ -0.39
HDAC6-208ENST00000438518 SIVA1O15304 175 aa12.61□□□□□ -0.39
HDAC6-208ENST00000438518 LY6G6CO95867 125 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms