RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 UBE2WQ96B02 151 aa11.69□□□□□ -0.54
HDDC3-201ENST00000330334 DAZAP1Q96EP5 407 aaKnown RBP11.69□□□□□ -0.54
HDDC3-201ENST00000330334 AP1S3Q96PC3 154 aa11.69□□□□□ -0.54
HDDC3-201ENST00000330334 FAM30AQ9NZY2 134 aa11.69□□□□□ -0.54
HDDC3-201ENST00000330334 IGKV2D-24A0A075B6R9 120 aa11.68□□□□□ -0.54
HDDC3-201ENST00000330334 MUC21A0A0G2JKD1 596 aa11.68□□□□□ -0.54
HDDC3-201ENST00000330334 MUC21A0A140T8X8 626 aa11.68□□□□□ -0.54
HDDC3-201ENST00000330334 C19orf71A6NCJ1 209 aa11.68□□□□□ -0.54
HDDC3-201ENST00000330334 RBFOX3A6NFN3 312 aa11.68□□□□□ -0.54
HDDC3-201ENST00000330334 TMEM262E9PQX1 116 aa11.68□□□□□ -0.54
HDDC3-201ENST00000330334 F5H697 171 aa11.68□□□□□ -0.54
HDDC3-201ENST00000330334 IGLC6P0CF74 106 aa11.68□□□□□ -0.54
HDDC3-201ENST00000330334 LECT2O14960 151 aa11.67□□□□□ -0.54
HDDC3-201ENST00000330334 IFNA1P01562 189 aa11.67□□□□□ -0.54
HDDC3-201ENST00000330334 GNG4P50150 75 aa11.67□□□□□ -0.54
HDDC3-201ENST00000330334 SLC51BQ86UW2 128 aa11.67□□□□□ -0.54
HDDC3-201ENST00000330334 FER1L6-AS1Q8NA97 138 aa11.67□□□□□ -0.54
HDDC3-201ENST00000330334 DNAJC30Q96LL9 226 aa11.67□□□□□ -0.54
HDDC3-201ENST00000330334 BIN3Q9NQY0 253 aa11.67□□□□□ -0.54
HDDC3-201ENST00000330334 XKRY2A2RUG3 117 aa11.66□□□□□ -0.54
HDDC3-201ENST00000330334 F2Z2F3 143 aa11.66□□□□□ -0.54
HDDC3-201ENST00000330334 TAGLN2P37802 199 aaKnown RBP11.66□□□□□ -0.54
HDDC3-201ENST00000330334 CACNG7P62955 275 aa11.66□□□□□ -0.54
HDDC3-201ENST00000330334 OR2D3Q8NGH3 330 aa11.66□□□□□ -0.54
HDDC3-201ENST00000330334 RAB19A4D1S5 217 aa11.65□□□□□ -0.54
HDDC3-201ENST00000330334 BCL2P10415 239 aa11.65□□□□□ -0.54
HDDC3-201ENST00000330334 ENHOQ6UWT2 76 aa11.65□□□□□ -0.54
HDDC3-201ENST00000330334 DMBT1Q9UGM3 2413 aaPredicted RBP11.65□□□□□ -0.55
HDDC3-201ENST00000330334 HERC1Q15751 4861 aa11.64□□□□□ -0.55
HDDC3-201ENST00000330334 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.64□□□□□ -0.55
HDDC3-201ENST00000330334 H7C1H1 209 aa11.64□□□□□ -0.55
HDDC3-201ENST00000330334 M0QY20 66 aa11.64□□□□□ -0.55
HDDC3-201ENST00000330334 GZMBP10144 247 aa11.64□□□□□ -0.55
HDDC3-201ENST00000330334 SSTP61278 116 aa11.64□□□□□ -0.55
HDDC3-201ENST00000330334 HAMPP81172 84 aa11.64□□□□□ -0.55
HDDC3-201ENST00000330334 MPV17L2Q567V2 206 aa11.64□□□□□ -0.55
HDDC3-201ENST00000330334 NTM-AS1Q6ZSK4 140 aa11.64□□□□□ -0.55
HDDC3-201ENST00000330334 CHCHD5Q9BSY4 110 aa11.64□□□□□ -0.55
HDDC3-201ENST00000330334 C1orf43Q9BWL3 253 aa11.64□□□□□ -0.55
HDDC3-201ENST00000330334 MED9Q9NWA0 146 aa11.64□□□□□ -0.55
HDDC3-201ENST00000330334 TRBV20OR9-2A0A075B6H5 130 aa11.63□□□□□ -0.55
HDDC3-201ENST00000330334 P01737 135 aa11.63□□□□□ -0.55
HDDC3-201ENST00000330334 C14orf177Q52M58 125 aa11.63□□□□□ -0.55
HDDC3-201ENST00000330334 WDR73Q6P4I2 378 aa11.63□□□□□ -0.55
HDDC3-201ENST00000330334 MYCBP2O75592 4640 aa11.63□□□□□ -0.55
HDDC3-201ENST00000330334 CRPP02741 224 aa11.62□□□□□ -0.55
HDDC3-201ENST00000330334 MIAQ16674 131 aa11.62□□□□□ -0.55
HDDC3-201ENST00000330334 IQCJQ1A5X6 159 aa11.62□□□□□ -0.55
HDDC3-201ENST00000330334 C9orf62Q8N4C0 152 aa11.62□□□□□ -0.55
HDDC3-201ENST00000330334 C15orf54Q8N8G6 183 aa11.62□□□□□ -0.55
HDDC3-201ENST00000330334 TPPP3Q9BW30 176 aa11.62□□□□□ -0.55
HDDC3-201ENST00000330334 PRR34Q9NV39 138 aa11.62□□□□□ -0.55
HDDC3-201ENST00000330334 TRBV25-1A0A075B6N4 114 aa11.61□□□□□ -0.55
HDDC3-201ENST00000330334 ANGP03950 147 aaKnown RBP11.61□□□□□ -0.55
HDDC3-201ENST00000330334 Q6ZNX1 250 aa11.61□□□□□ -0.55
HDDC3-201ENST00000330334 TRGC1P0CF51 173 aa11.6□□□□□ -0.55
HDDC3-201ENST00000330334 CNFNQ9BYD5 112 aa11.6□□□□□ -0.55
HDDC3-201ENST00000330334 FLG2Q5D862 2391 aaPredicted RBP11.6□□□□□ -0.55
HDDC3-201ENST00000330334 NTF3P20783 257 aa11.59□□□□□ -0.55
HDDC3-201ENST00000330334 RBX1P62877 108 aa11.59□□□□□ -0.55
HDDC3-201ENST00000330334 SUMO4Q6EEV6 95 aa11.59□□□□□ -0.55
HDDC3-201ENST00000330334 LYZL1Q6UWQ5 148 aa11.59□□□□□ -0.55
HDDC3-201ENST00000330334 NUDT10Q8NFP7 164 aa11.59□□□□□ -0.55
HDDC3-201ENST00000330334 NUDT11Q96G61 164 aa11.59□□□□□ -0.55
HDDC3-201ENST00000330334 IGHV1-24A0A0C4DH33 117 aa11.58□□□□□ -0.56
HDDC3-201ENST00000330334 MGPP08493 103 aa11.58□□□□□ -0.56
HDDC3-201ENST00000330334 CTRLP40313 264 aa11.58□□□□□ -0.56
HDDC3-201ENST00000330334 RASL11AQ6T310 242 aa11.58□□□□□ -0.56
HDDC3-201ENST00000330334 DPH3P1Q9H4G8 78 aa11.58□□□□□ -0.56
HDDC3-201ENST00000330334 PLA2G1BP04054 148 aaKnown RBP11.57□□□□□ -0.56
HDDC3-201ENST00000330334 PGLYRP4Q96LB8 373 aa11.57□□□□□ -0.56
HDDC3-201ENST00000330334 CHAC1Q9BUX1 264 aa11.57□□□□□ -0.56
HDDC3-201ENST00000330334 NIT2Q9NQR4 276 aa11.57□□□□□ -0.56
HDDC3-201ENST00000330334 A0A1B0GUV1 79 aa11.56□□□□□ -0.56
HDDC3-201ENST00000330334 GAGE6Q13070 117 aa11.56□□□□□ -0.56
HDDC3-201ENST00000330334 LINC01620Q4KN68 170 aa11.56□□□□□ -0.56
HDDC3-201ENST00000330334 LINC00269Q8N2A0 174 aa11.56□□□□□ -0.56
HDDC3-201ENST00000330334 OCC1Q8TAD7 63 aa11.56□□□□□ -0.56
HDDC3-201ENST00000330334 TMEM250H0YL14 139 aa11.55□□□□□ -0.56
HDDC3-201ENST00000330334 NKX2-5P52952 324 aaPredicted RBP11.55□□□□□ -0.56
HDDC3-201ENST00000330334 DGAT2L7PQ6IED9 249 aa11.55□□□□□ -0.56
HDDC3-201ENST00000330334 KRTAP26-1Q6PEX3 210 aa11.55□□□□□ -0.56
HDDC3-201ENST00000330334 SCXQ7RTU7 201 aa11.55□□□□□ -0.56
HDDC3-201ENST00000330334 LYPD6BQ8NI32 183 aa11.55□□□□□ -0.56
HDDC3-201ENST00000330334 RPP21Q9H633 154 aaKnown RBP11.55□□□□□ -0.56
HDDC3-201ENST00000330334 USP17L23D6RBM5 183 aa11.54□□□□□ -0.56
HDDC3-201ENST00000330334 K7EN84 100 aa11.54□□□□□ -0.56
HDDC3-201ENST00000330334 BLOC1S1P78537 153 aa11.54□□□□□ -0.56
HDDC3-201ENST00000330334 AKAP14Q86UN6 197 aa11.54□□□□□ -0.56
HDDC3-201ENST00000330334 LINC00528Q8N1L1 170 aa11.54□□□□□ -0.56
HDDC3-201ENST00000330334 TMEM243Q9BU79 118 aa11.54□□□□□ -0.56
HDDC3-201ENST00000330334 TWIST1Q15672 202 aa11.53□□□□□ -0.56
HDDC3-201ENST00000330334 RNASE7Q9H1E1 156 aaKnown RBP11.53□□□□□ -0.56
HDDC3-201ENST00000330334 TRAV8-4A0A0B4J246 113 aa11.52□□□□□ -0.57
HDDC3-201ENST00000330334 HLA-DQA1P01909 254 aa11.52□□□□□ -0.57
HDDC3-201ENST00000330334 REG3AQ06141 175 aa11.52□□□□□ -0.57
HDDC3-201ENST00000330334 C20orf203Q8NBC4 194 aa11.52□□□□□ -0.57
HDDC3-201ENST00000330334 NDUFS6O75380 124 aaKnown RBP11.51□□□□□ -0.57
HDDC3-201ENST00000330334 PRSS1P07477 247 aa11.51□□□□□ -0.57
HDDC3-201ENST00000330334 CLRN3Q8NCR9 226 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms