RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 INSP01308 110 aa17.53■□□□□ 0.4
TRIM54-201ENST00000296098 RNASE1P07998 156 aaKnown RBP17.53■□□□□ 0.4
TRIM54-201ENST00000296098 GCSHP23434 173 aa17.53■□□□□ 0.4
TRIM54-201ENST00000296098 PMVKQ15126 192 aa17.53■□□□□ 0.4
TRIM54-201ENST00000296098 EDA2RQ9HAV5 297 aa17.53■□□□□ 0.4
TRIM54-201ENST00000296098 CCDC168Q8NDH2 2452 aa17.52■□□□□ 0.4
TRIM54-201ENST00000296098 LINC00467Q9BRT7 94 aa17.52■□□□□ 0.4
TRIM54-201ENST00000296098 ODF3L2Q3SX64 289 aa17.52■□□□□ 0.39
TRIM54-201ENST00000296098 AMMECR1LQ6DCA0 310 aa17.52■□□□□ 0.39
TRIM54-201ENST00000296098 CITED2Q99967 270 aaPredicted RBP17.52■□□□□ 0.39
TRIM54-201ENST00000296098 PDZD2O15018 2839 aa17.51■□□□□ 0.39
TRIM54-201ENST00000296098 PIK3CD-AS1Q5SR53 167 aa17.51■□□□□ 0.39
TRIM54-201ENST00000296098 OR4C5Q8NGB2 326 aa17.51■□□□□ 0.39
TRIM54-201ENST00000296098 CLUHP3Q96NS8 147 aa17.51■□□□□ 0.39
TRIM54-201ENST00000296098 LINC01587Q99440 93 aa17.51■□□□□ 0.39
TRIM54-201ENST00000296098 C16orf95Q9H693 158 aa17.51■□□□□ 0.39
TRIM54-201ENST00000296098 TSSC4Q9Y5U2 329 aaPredicted RBP17.51■□□□□ 0.39
TRIM54-201ENST00000296098 IGLV4-69A0A075B6H9 119 aa17.5■□□□□ 0.39
TRIM54-201ENST00000296098 A8MWV9 139 aa17.5■□□□□ 0.39
TRIM54-201ENST00000296098 E9PLD3 99 aa17.5■□□□□ 0.39
TRIM54-201ENST00000296098 I3L3M4 83 aa17.5■□□□□ 0.39
TRIM54-201ENST00000296098 PRM2P04554 102 aa17.5■□□□□ 0.39
TRIM54-201ENST00000296098 LINC01006Q8NI28 216 aa17.5■□□□□ 0.39
TRIM54-201ENST00000296098 CST9LQ9H4G1 147 aa17.5■□□□□ 0.39
TRIM54-201ENST00000296098 CHD6Q8TD26 2715 aa17.5■□□□□ 0.39
TRIM54-201ENST00000296098 AKAP9Q99996 3911 aa17.5■□□□□ 0.39
TRIM54-201ENST00000296098 C9orf118A6NHY6 69 aa17.5■□□□□ 0.39
TRIM54-201ENST00000296098 PAPPA-AS1Q5QFB9 102 aa17.5■□□□□ 0.39
TRIM54-201ENST00000296098 IGHV3-73A0A0B4J1V6 119 aa17.49■□□□□ 0.39
TRIM54-201ENST00000296098 FXYD2P54710 66 aa17.49■□□□□ 0.39
TRIM54-201ENST00000296098 SCGB2A2Q13296 93 aa17.49■□□□□ 0.39
TRIM54-201ENST00000296098 PTH2Q96A98 100 aa17.49■□□□□ 0.39
TRIM54-201ENST00000296098 PRADC1Q9BSG0 188 aa17.48■□□□□ 0.39
TRIM54-201ENST00000296098 MYMXA0A1B0GTQ4 84 aa17.48■□□□□ 0.39
TRIM54-201ENST00000296098 C11orf86A6NJI1 115 aa17.48■□□□□ 0.39
TRIM54-201ENST00000296098 UFSP1Q6NVU6 142 aa17.48■□□□□ 0.39
TRIM54-201ENST00000296098 CEND1Q8N111 149 aa17.48■□□□□ 0.39
TRIM54-201ENST00000296098 C11orf72Q8NBR9 251 aa17.48■□□□□ 0.39
TRIM54-201ENST00000296098 TAL2Q16559 108 aa17.47■□□□□ 0.39
TRIM54-201ENST00000296098 STHQ8IWL8 128 aa17.47■□□□□ 0.39
TRIM54-201ENST00000296098 TM2D2Q9BX73 214 aa17.47■□□□□ 0.39
TRIM54-201ENST00000296098 KMT2BQ9UMN6 2715 aaPredicted RBP17.46■□□□□ 0.39
TRIM54-201ENST00000296098 P0DMU3 169 aa17.46■□□□□ 0.39
TRIM54-201ENST00000296098 FAM231AP0DMU4 169 aa17.46■□□□□ 0.39
TRIM54-201ENST00000296098 FAM231CP0DMU5 169 aa17.46■□□□□ 0.39
TRIM54-201ENST00000296098 C20orf203Q8NBC4 194 aa17.46■□□□□ 0.39
TRIM54-201ENST00000296098 K7EP13 123 aa17.45■□□□□ 0.38
TRIM54-201ENST00000296098 EMP1P54849 157 aa17.45■□□□□ 0.38
TRIM54-201ENST00000296098 PROK1P58294 105 aa17.45■□□□□ 0.38
TRIM54-201ENST00000296098 RAB37Q96AX2 223 aa17.45■□□□□ 0.38
TRIM54-201ENST00000296098 SPXQ9BT56 116 aa17.45■□□□□ 0.38
TRIM54-201ENST00000296098 H3BUT2 72 aa17.45■□□□□ 0.38
TRIM54-201ENST00000296098 FOSL1P15407 271 aa17.45■□□□□ 0.38
TRIM54-201ENST00000296098 SMIM13P0DJ93 91 aa17.44■□□□□ 0.38
TRIM54-201ENST00000296098 HERVK_113P61574 105 aa17.44■□□□□ 0.38
TRIM54-201ENST00000296098 XCL2Q9UBD3 114 aa17.44■□□□□ 0.38
TRIM54-201ENST00000296098 CFAP126Q5VTH2 177 aa17.43■□□□□ 0.38
TRIM54-201ENST00000296098 ZNF418Q8TF45 676 aaPredicted RBP17.43■□□□□ 0.38
TRIM54-201ENST00000296098 RHODO00212 210 aa17.42■□□□□ 0.38
TRIM54-201ENST00000296098 HIST1H4GQ99525 98 aa17.42■□□□□ 0.38
TRIM54-201ENST00000296098 MRPL16Q9NX20 251 aaKnown RBP17.42■□□□□ 0.38
TRIM54-201ENST00000296098 NAA38Q9BRA0 125 aaKnown RBP17.42■□□□□ 0.38
TRIM54-201ENST00000296098 TNFRSF18Q9Y5U5 241 aa17.42■□□□□ 0.38
TRIM54-201ENST00000296098 NACAE9PAV3 2078 aa17.41■□□□□ 0.38
TRIM54-201ENST00000296098 BEAN1Q3B7T3 259 aa17.41■□□□□ 0.38
TRIM54-201ENST00000296098 ZNF815PA8K554 130 aa17.4■□□□□ 0.38
TRIM54-201ENST00000296098 HILS1P60008 231 aa17.4■□□□□ 0.38
TRIM54-201ENST00000296098 OPRPNQ99935 248 aaPredicted RBP17.4■□□□□ 0.38
TRIM54-201ENST00000296098 NHP2Q9NX24 153 aaKnown RBP17.4■□□□□ 0.38
TRIM54-201ENST00000296098 TRBV7-3A0A075B6L6 115 aa17.39■□□□□ 0.37
TRIM54-201ENST00000296098 ZNRF2Q8NHG8 242 aa17.39■□□□□ 0.37
TRIM54-201ENST00000296098 GAGE10A6NGK3 116 aa17.38■□□□□ 0.37
TRIM54-201ENST00000296098 K7ERJ3 54 aa17.38■□□□□ 0.37
TRIM54-201ENST00000296098 SAP30O75446 220 aa17.38■□□□□ 0.37
TRIM54-201ENST00000296098 TMEM170BQ5T4T1 132 aa17.38■□□□□ 0.37
TRIM54-201ENST00000296098 Q6ZSN1 163 aa17.38■□□□□ 0.37
TRIM54-201ENST00000296098 GTF2H5Q6ZYL4 71 aa17.38■□□□□ 0.37
TRIM54-201ENST00000296098 NFE4Q86UQ8 179 aa17.38■□□□□ 0.37
TRIM54-201ENST00000296098 C1orf158Q8N1D5 194 aa17.38■□□□□ 0.37
TRIM54-201ENST00000296098 RS1O15537 224 aa17.37■□□□□ 0.37
TRIM54-201ENST00000296098 IGLV4-3A0A075B6K6 122 aa17.37■□□□□ 0.37
TRIM54-201ENST00000296098 IGHV3OR16-12A0A075B7B8 117 aa17.37■□□□□ 0.37
TRIM54-201ENST00000296098 A0A1W2PPM0 123 aa17.37■□□□□ 0.37
TRIM54-201ENST00000296098 AZU1P20160 251 aa17.37■□□□□ 0.37
TRIM54-201ENST00000296098 PHLDA1Q8WV24 401 aaPredicted RBP17.37■□□□□ 0.37
TRIM54-201ENST00000296098 IGHV3-53P01767 116 aa17.36■□□□□ 0.37
TRIM54-201ENST00000296098 K7EP34 96 aa17.35■□□□□ 0.37
TRIM54-201ENST00000296098 SCGB1D4Q6XE38 83 aa17.35■□□□□ 0.37
TRIM54-201ENST00000296098 ACANP16112 2415 aa17.35■□□□□ 0.37
TRIM54-201ENST00000296098 NDUFA7O95182 113 aa17.35■□□□□ 0.37
TRIM54-201ENST00000296098 CMC4P56277 68 aaPredicted RBP17.35■□□□□ 0.37
TRIM54-201ENST00000296098 IL17DQ8TAD2 202 aa17.35■□□□□ 0.37
TRIM54-201ENST00000296098 PYGO1Q9Y3Y4 419 aa17.35■□□□□ 0.37
TRIM54-201ENST00000296098 WNK1Q9H4A3 2382 aa17.34■□□□□ 0.37
TRIM54-201ENST00000296098 NF1P21359 2839 aa17.34■□□□□ 0.37
TRIM54-201ENST00000296098 DNAJC30Q96LL9 226 aa17.34■□□□□ 0.37
TRIM54-201ENST00000296098 Q9UF83 564 aa17.34■□□□□ 0.37
TRIM54-201ENST00000296098 CUBNO60494 3623 aa17.34■□□□□ 0.37
TRIM54-201ENST00000296098 SAMD5Q5TGI4 173 aa17.33■□□□□ 0.37
TRIM54-201ENST00000296098 PLEKHB2Q96CS7 222 aa17.33■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms