RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 KLHL30-AS1Q8NEE0 82 aa12.15□□□□□ -0.46
HOXD3-201ENST00000249440 DUX5Q96PT3 197 aa12.15□□□□□ -0.46
HOXD3-201ENST00000249440 ZNF876PQ49A33 203 aa12.15□□□□□ -0.46
HOXD3-201ENST00000249440 MORN3Q6PF18 240 aaPredicted RBP12.15□□□□□ -0.46
HOXD3-201ENST00000249440 RNF152Q8N8N0 203 aa12.15□□□□□ -0.46
HOXD3-201ENST00000249440 PLEKHB2Q96CS7 222 aa12.15□□□□□ -0.46
HOXD3-201ENST00000249440 TRGV11A0A075B6L2 103 aa12.14□□□□□ -0.47
HOXD3-201ENST00000249440 RHOHQ15669 191 aa12.14□□□□□ -0.47
HOXD3-201ENST00000249440 NSUN5P1Q3KNT7 163 aa12.14□□□□□ -0.47
HOXD3-201ENST00000249440 Q6YL49 198 aa12.14□□□□□ -0.47
HOXD3-201ENST00000249440 MAPK1IP1LQ8NDC0 245 aa12.14□□□□□ -0.47
HOXD3-201ENST00000249440 H3BMG7 143 aa12.14□□□□□ -0.47
HOXD3-201ENST00000249440 TMEM170BQ5T4T1 132 aa12.14□□□□□ -0.47
HOXD3-201ENST00000249440 ZNF702PQ9H963 129 aa12.13□□□□□ -0.47
HOXD3-201ENST00000249440 AMTNQ6UX39 209 aa12.12□□□□□ -0.47
HOXD3-201ENST00000249440 TEX48A0A1B0GUV7 120 aa12.12□□□□□ -0.47
HOXD3-201ENST00000249440 ZNRF2Q8NHG8 242 aa12.12□□□□□ -0.47
HOXD3-201ENST00000249440 I3L3M4 83 aa12.11□□□□□ -0.47
HOXD3-201ENST00000249440 TCTEX1D4Q5JR98 221 aa12.11□□□□□ -0.47
HOXD3-201ENST00000249440 CREBBPQ92793 2442 aa12.11□□□□□ -0.47
HOXD3-201ENST00000249440 A0A0J9YY99 117 aa12.11□□□□□ -0.47
HOXD3-201ENST00000249440 MRPL16Q9NX20 251 aaKnown RBP12.11□□□□□ -0.47
HOXD3-201ENST00000249440 PGPEP1Q9NXJ5 209 aa12.11□□□□□ -0.47
HOXD3-201ENST00000249440 FSHBP01225 129 aa12.1□□□□□ -0.47
HOXD3-201ENST00000249440 UBE2D1P51668 147 aa12.1□□□□□ -0.47
HOXD3-201ENST00000249440 WFDC2Q14508 124 aa12.1□□□□□ -0.47
HOXD3-201ENST00000249440 GAGE13Q4V321 117 aa12.1□□□□□ -0.47
HOXD3-201ENST00000249440 NFE4Q86UQ8 179 aa12.1□□□□□ -0.47
HOXD3-201ENST00000249440 C20orf203Q8NBC4 194 aa12.1□□□□□ -0.47
HOXD3-201ENST00000249440 P0DMU3 169 aa12.09□□□□□ -0.47
HOXD3-201ENST00000249440 FAM231AP0DMU4 169 aa12.09□□□□□ -0.47
HOXD3-201ENST00000249440 FAM231CP0DMU5 169 aa12.09□□□□□ -0.47
HOXD3-201ENST00000249440 PRRC2AP48634 2157 aaKnown RBP12.09□□□□□ -0.47
HOXD3-201ENST00000249440 SPANXB1Q9NS25 103 aaPredicted RBP12.09□□□□□ -0.47
HOXD3-201ENST00000249440 BEX4Q9NWD9 120 aaPredicted RBP12.09□□□□□ -0.47
HOXD3-201ENST00000249440 NOTCH2Q04721 2471 aa12.08□□□□□ -0.48
HOXD3-201ENST00000249440 TEX15Q9BXT5 2789 aa12.08□□□□□ -0.48
HOXD3-201ENST00000249440 MXRA5Q9NR99 2828 aa12.08□□□□□ -0.48
HOXD3-201ENST00000249440 J3QQQ9 107 aa12.08□□□□□ -0.48
HOXD3-201ENST00000249440 LGALS3P17931 250 aaKnown RBP12.08□□□□□ -0.48
HOXD3-201ENST00000249440 TSPEAR-AS2P59090 65 aa12.08□□□□□ -0.48
HOXD3-201ENST00000249440 SLC25A29Q8N8R3 303 aa12.08□□□□□ -0.48
HOXD3-201ENST00000249440 OPRPNQ99935 248 aaPredicted RBP12.08□□□□□ -0.48
HOXD3-201ENST00000249440 ITPR3Q14573 2671 aa12.07□□□□□ -0.48
HOXD3-201ENST00000249440 J3QR89 54 aa12.07□□□□□ -0.48
HOXD3-201ENST00000249440 IGHV4-31P0DP07 118 aa12.07□□□□□ -0.48
HOXD3-201ENST00000249440 HTN1P15515 57 aa12.07□□□□□ -0.48
HOXD3-201ENST00000249440 EDA2RQ9HAV5 297 aa12.07□□□□□ -0.48
HOXD3-201ENST00000249440 KNCNA6PVL3 124 aa12.06□□□□□ -0.48
HOXD3-201ENST00000249440 RBMY1A1P0DJD3 496 aaKnown RBP12.06□□□□□ -0.48
HOXD3-201ENST00000249440 RBMY1CP0DJD4 496 aa12.06□□□□□ -0.48
HOXD3-201ENST00000249440 SLURP1P55000 103 aa12.06□□□□□ -0.48
HOXD3-201ENST00000249440 DEFB131AP59861 70 aa12.06□□□□□ -0.48
HOXD3-201ENST00000249440 RBMY1FQ15415 496 aaKnown RBP12.06□□□□□ -0.48
HOXD3-201ENST00000249440 FLNBO75369 2602 aaKnown RBP12.06□□□□□ -0.48
HOXD3-201ENST00000249440 CUBNO60494 3623 aa12.06□□□□□ -0.48
HOXD3-201ENST00000249440 CR1P17927 2039 aa12.05□□□□□ -0.48
HOXD3-201ENST00000249440 APOMO95445 188 aa12.05□□□□□ -0.48
HOXD3-201ENST00000249440 IGHV3-30P01768 117 aa12.05□□□□□ -0.48
HOXD3-201ENST00000249440 IGHV3-30-5P0DP03 117 aa12.05□□□□□ -0.48
HOXD3-201ENST00000249440 DEFB136Q30KP8 78 aa12.05□□□□□ -0.48
HOXD3-201ENST00000249440 VCX2Q9H322 139 aa12.05□□□□□ -0.48
HOXD3-201ENST00000249440 TMEM223A0PJW6 202 aa12.05□□□□□ -0.48
HOXD3-201ENST00000249440 ETDBQ3ZM63 59 aa12.05□□□□□ -0.48
HOXD3-201ENST00000249440 PEMTQ9UBM1 199 aa12.05□□□□□ -0.48
HOXD3-201ENST00000249440 PRO0461Q9UI25 63 aa12.05□□□□□ -0.48
HOXD3-201ENST00000249440 A8MTW9 85 aa12.04□□□□□ -0.48
HOXD3-201ENST00000249440 H3BMM0 161 aa12.04□□□□□ -0.48
HOXD3-201ENST00000249440 LEPROTO15243 131 aa12.04□□□□□ -0.48
HOXD3-201ENST00000249440 TSPAN13O95857 204 aa12.04□□□□□ -0.48
HOXD3-201ENST00000249440 Q5PR19 223 aa12.04□□□□□ -0.48
HOXD3-201ENST00000249440 NDUFA11Q86Y39 141 aa12.04□□□□□ -0.48
HOXD3-201ENST00000249440 DLX4Q92988 240 aaPredicted RBP12.04□□□□□ -0.48
HOXD3-201ENST00000249440 AMELXQ99217 191 aa12.04□□□□□ -0.48
HOXD3-201ENST00000249440 IGLV4-3A0A075B6K6 122 aa12.04□□□□□ -0.48
HOXD3-201ENST00000249440 TRAV2A0A0B4J234 112 aa12.04□□□□□ -0.48
HOXD3-201ENST00000249440 C18orf65Q6ZTR6 163 aa12.04□□□□□ -0.48
HOXD3-201ENST00000249440 TLN2Q9Y4G6 2542 aa12.03□□□□□ -0.48
HOXD3-201ENST00000249440 A8MWV9 139 aa12.03□□□□□ -0.48
HOXD3-201ENST00000249440 RHODO00212 210 aa12.03□□□□□ -0.48
HOXD3-201ENST00000249440 LYRM7Q5U5X0 104 aa12.03□□□□□ -0.48
HOXD3-201ENST00000249440 SH2D6Q7Z4S9 175 aa12.03□□□□□ -0.48
HOXD3-201ENST00000249440 LOC107984156A0A0G2JMH3 177 aa12.03□□□□□ -0.48
HOXD3-201ENST00000249440 ARL17AQ8IVW1 177 aa12.03□□□□□ -0.48
HOXD3-201ENST00000249440 Q8N2B8 174 aa12.03□□□□□ -0.48
HOXD3-201ENST00000249440 DUX3Q96PT4 197 aa12.03□□□□□ -0.48
HOXD3-201ENST00000249440 SPAG8Q99932 426 aaPredicted RBP12.03□□□□□ -0.48
HOXD3-201ENST00000249440 PYGO1Q9Y3Y4 419 aa12.03□□□□□ -0.48
HOXD3-201ENST00000249440 FLNAP21333 2647 aaKnown RBP12.02□□□□□ -0.49
HOXD3-201ENST00000249440 IGHV3-73A0A0B4J1V6 119 aa12.02□□□□□ -0.49
HOXD3-201ENST00000249440 M0R2P5 195 aa12.02□□□□□ -0.49
HOXD3-201ENST00000249440 ZNF22P17026 224 aaPredicted RBP12.02□□□□□ -0.49
HOXD3-201ENST00000249440 PIK3CD-AS1Q5SR53 167 aa12.02□□□□□ -0.49
HOXD3-201ENST00000249440 MTURNQ8N3F0 131 aa12.02□□□□□ -0.49
HOXD3-201ENST00000249440 ACANP16112 2415 aa12.02□□□□□ -0.49
HOXD3-201ENST00000249440 UBE2D3P61077 147 aa12.02□□□□□ -0.49
HOXD3-201ENST00000249440 UBE2D2P62837 147 aa12.02□□□□□ -0.49
HOXD3-201ENST00000249440 TNFRSF18Q9Y5U5 241 aa12.02□□□□□ -0.49
HOXD3-201ENST00000249440 CFC1BP0CG36 223 aa12.01□□□□□ -0.49
HOXD3-201ENST00000249440 CFC1P0CG37 223 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms