RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 A0A087WWL8 130 aa10.62□□□□□ -0.71
CLN3-246ENST00000636228 KRBOX1C9JBD0 128 aa10.62□□□□□ -0.71
CLN3-246ENST00000636228 ARPC5O15511 151 aa10.62□□□□□ -0.71
CLN3-246ENST00000636228 PLA2G1BP04054 148 aaKnown RBP10.62□□□□□ -0.71
CLN3-246ENST00000636228 TOR2AQ5JU69 321 aa10.62□□□□□ -0.71
CLN3-246ENST00000636228 Q86TA4 180 aa10.62□□□□□ -0.71
CLN3-246ENST00000636228 ZC2HC1AQ96GY0 325 aa10.62□□□□□ -0.71
CLN3-246ENST00000636228 KLK12Q9UKR0 248 aa10.62□□□□□ -0.71
CLN3-246ENST00000636228 IGKV2D-24A0A075B6R9 120 aa10.61□□□□□ -0.71
CLN3-246ENST00000636228 A0A087WWC5 75 aa10.61□□□□□ -0.71
CLN3-246ENST00000636228 TMSB15BA0A087X1C1 80 aa10.61□□□□□ -0.71
CLN3-246ENST00000636228 RBFOX3A6NFN3 312 aa10.61□□□□□ -0.71
CLN3-246ENST00000636228 SH2D1AO60880 128 aa10.61□□□□□ -0.71
CLN3-246ENST00000636228 ZNF345Q14585 488 aa10.61□□□□□ -0.71
CLN3-246ENST00000636228 PIK3CD-AS1Q5SR53 167 aa10.61□□□□□ -0.71
CLN3-246ENST00000636228 NIT1Q86X76 327 aa10.61□□□□□ -0.71
CLN3-246ENST00000636228 FAM74A7A6NL05 159 aa10.6□□□□□ -0.71
CLN3-246ENST00000636228 SCXQ7RTU7 201 aa10.6□□□□□ -0.71
CLN3-246ENST00000636228 SYT8Q8NBV8 401 aa10.6□□□□□ -0.71
CLN3-246ENST00000636228 URGCP-MRPS24S4R325 110 aa10.6□□□□□ -0.71
CLN3-246ENST00000636228 CTXND1A0A1B0GTU2 59 aa10.59□□□□□ -0.71
CLN3-246ENST00000636228 M0R381 172 aa10.59□□□□□ -0.71
CLN3-246ENST00000636228 UBE2WQ96B02 151 aa10.59□□□□□ -0.71
CLN3-246ENST00000636228 RHODO00212 210 aa10.58□□□□□ -0.72
CLN3-246ENST00000636228 KCNRGQ8N5I3 272 aa10.58□□□□□ -0.72
CLN3-246ENST00000636228 Q8N976 141 aa10.58□□□□□ -0.72
CLN3-246ENST00000636228 SFRP2Q96HF1 295 aa10.58□□□□□ -0.72
CLN3-246ENST00000636228 PHLDA3Q9Y5J5 127 aa10.58□□□□□ -0.72
CLN3-246ENST00000636228 COX11Q9Y6N1 276 aa10.58□□□□□ -0.72
CLN3-246ENST00000636228 BORCS7-ASMTA0A0B4J1R7 106 aa10.57□□□□□ -0.72
CLN3-246ENST00000636228 A0A0D9SG52 128 aa10.57□□□□□ -0.72
CLN3-246ENST00000636228 KRTAP29-1A8MX34 341 aaPredicted RBP10.57□□□□□ -0.72
CLN3-246ENST00000636228 DNLZQ5SXM8 178 aa10.57□□□□□ -0.72
CLN3-246ENST00000636228 DEFB104AQ8WTQ1 72 aa10.57□□□□□ -0.72
CLN3-246ENST00000636228 HIST1H2BAQ96A08 127 aa10.57□□□□□ -0.72
CLN3-246ENST00000636228 RMI2Q96E14 147 aa10.57□□□□□ -0.72
CLN3-246ENST00000636228 A0A087WX48 190 aa10.56□□□□□ -0.72
CLN3-246ENST00000636228 TPT1P13693 172 aaKnown RBP10.56□□□□□ -0.72
CLN3-246ENST00000636228 AKR1C8PQ5T2L2 129 aa10.56□□□□□ -0.72
CLN3-246ENST00000636228 FAM162BQ5T6X4 162 aa10.56□□□□□ -0.72
CLN3-246ENST00000636228 ZFP30Q9Y2G7 519 aa10.56□□□□□ -0.72
CLN3-246ENST00000636228 LRP1Q07954 4544 aaKnown RBP10.56□□□□□ -0.72
CLN3-246ENST00000636228 PFDN1O60925 122 aa10.55□□□□□ -0.72
CLN3-246ENST00000636228 UBE2G1P62253 170 aa10.55□□□□□ -0.72
CLN3-246ENST00000636228 ZNF674Q2M3X9 581 aa10.55□□□□□ -0.72
CLN3-246ENST00000636228 CHAC1Q9BUX1 264 aa10.55□□□□□ -0.72
CLN3-246ENST00000636228 CYTL1Q9NRR1 136 aa10.55□□□□□ -0.72
CLN3-246ENST00000636228 TMEM262E9PQX1 116 aa10.54□□□□□ -0.72
CLN3-246ENST00000636228 BCL2L11O43521 198 aa10.54□□□□□ -0.72
CLN3-246ENST00000636228 KRTAP10-4P60372 401 aaPredicted RBP10.54□□□□□ -0.72
CLN3-246ENST00000636228 UBE2D3P61077 147 aa10.54□□□□□ -0.72
CLN3-246ENST00000636228 UBE2D2P62837 147 aa10.54□□□□□ -0.72
CLN3-246ENST00000636228 LINC01559Q495D7 138 aa10.54□□□□□ -0.72
CLN3-246ENST00000636228 TMUB2Q71RG4 321 aa10.54□□□□□ -0.72
CLN3-246ENST00000636228 COX8CQ7Z4L0 72 aa10.54□□□□□ -0.72
CLN3-246ENST00000636228 C9orf62Q8N4C0 152 aa10.54□□□□□ -0.72
CLN3-246ENST00000636228 CIRBP-AS1Q8TBR5 109 aa10.54□□□□□ -0.72
CLN3-246ENST00000636228 FMC1Q96HJ9 113 aa10.54□□□□□ -0.72
CLN3-246ENST00000636228 NKX6-2Q9C056 277 aaPredicted RBP10.54□□□□□ -0.72
CLN3-246ENST00000636228 MAP1LC3B2A6NCE7 125 aa10.53□□□□□ -0.72
CLN3-246ENST00000636228 SEC11BP0C7V7 166 aa10.53□□□□□ -0.72
CLN3-246ENST00000636228 RPL36AP83881 106 aaKnown RBP10.53□□□□□ -0.72
CLN3-246ENST00000636228 CST9LP1Q5W188 147 aa10.53□□□□□ -0.72
CLN3-246ENST00000636228 KCNIP4Q6PIL6 250 aa10.53□□□□□ -0.72
CLN3-246ENST00000636228 ZFP82Q8N141 532 aa10.53□□□□□ -0.72
CLN3-246ENST00000636228 RPL36ALQ969Q0 106 aaKnown RBP10.53□□□□□ -0.72
CLN3-246ENST00000636228 MAP1LC3BQ9GZQ8 125 aa10.53□□□□□ -0.72
CLN3-246ENST00000636228 KANTRA0A1W2PQU2 76 aa10.52□□□□□ -0.73
CLN3-246ENST00000636228 LTAP01374 205 aa10.52□□□□□ -0.73
CLN3-246ENST00000636228 FHITP49789 147 aa10.52□□□□□ -0.73
CLN3-246ENST00000636228 RPL19P84098 196 aaKnown RBP10.52□□□□□ -0.73
CLN3-246ENST00000636228 ELOBQ15370 118 aa10.52□□□□□ -0.73
CLN3-246ENST00000636228 ENHOQ6UWT2 76 aa10.52□□□□□ -0.73
CLN3-246ENST00000636228 FAT3Q8TDW7 4589 aa10.51□□□□□ -0.73
CLN3-246ENST00000636228 TRBV7-3A0A075B6L6 115 aa10.51□□□□□ -0.73
CLN3-246ENST00000636228 MUC21A0A0G2JKD1 596 aa10.51□□□□□ -0.73
CLN3-246ENST00000636228 TRBV10-1A0A0K0K1A3 114 aa10.51□□□□□ -0.73
CLN3-246ENST00000636228 MUC21A0A140T8X8 626 aa10.51□□□□□ -0.73
CLN3-246ENST00000636228 NKX2-5P52952 324 aaPredicted RBP10.51□□□□□ -0.73
CLN3-246ENST00000636228 SSTP61278 116 aa10.51□□□□□ -0.73
CLN3-246ENST00000636228 ATRAIDQ6UW56 229 aa10.51□□□□□ -0.73
CLN3-246ENST00000636228 C15orf54Q8N8G6 183 aa10.51□□□□□ -0.73
CLN3-246ENST00000636228 HMCN2Q8NDA2 5059 aa10.51□□□□□ -0.73
CLN3-246ENST00000636228 TRBV6-8A0A0A6YYG3 113 aa10.5□□□□□ -0.73
CLN3-246ENST00000636228 TRBV6-1A0A0K0K1D8 114 aa10.5□□□□□ -0.73
CLN3-246ENST00000636228 IGLV2-8P01709 118 aa10.5□□□□□ -0.73
CLN3-246ENST00000636228 AKR1C3P42330 323 aa10.5□□□□□ -0.73
CLN3-246ENST00000636228 NEXN-AS1Q8NBZ9 246 aa10.5□□□□□ -0.73
CLN3-246ENST00000636228 CHCHD7Q9BUK0 85 aa10.5□□□□□ -0.73
CLN3-246ENST00000636228 ZNF471Q9BX82 626 aaPredicted RBP10.5□□□□□ -0.73
CLN3-246ENST00000636228 A0A1B0GV50 99 aa10.49□□□□□ -0.73
CLN3-246ENST00000636228 PAGE4O60829 102 aa10.49□□□□□ -0.73
CLN3-246ENST00000636228 Q0VG73 95 aa10.49□□□□□ -0.73
CLN3-246ENST00000636228 ZNF56Q15929 161 aa10.49□□□□□ -0.73
CLN3-246ENST00000636228 MPV17L2Q567V2 206 aa10.49□□□□□ -0.73
CLN3-246ENST00000636228 OR10G8Q8NGN5 311 aa10.49□□□□□ -0.73
CLN3-246ENST00000636228 OR10AG1Q8NH19 301 aa10.49□□□□□ -0.73
CLN3-246ENST00000636228 STOML3Q8TAV4 291 aa10.49□□□□□ -0.73
CLN3-246ENST00000636228 C1orf43Q9BWL3 253 aa10.49□□□□□ -0.73
CLN3-246ENST00000636228 ANGP03950 147 aaKnown RBP10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms