RNA–Protein interactions for RNA: ENST00000561258.1

VPS13C-210, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 3

Gene VPS13C, Length 614 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-210ENST00000561258 OR5AS1Q8N127 324 aa2.25□□□□□ -2.05
VPS13C-210ENST00000561258 HIST3H2BBQ8N257 126 aa2.25□□□□□ -2.05
VPS13C-210ENST00000561258 EXOC3-AS1Q8N2X6 119 aa2.25□□□□□ -2.05
VPS13C-210ENST00000561258 TMEM133Q9H2Q1 129 aa2.25□□□□□ -2.05
VPS13C-210ENST00000561258 MEIS3P1A6NDR6 274 aa2.24□□□□□ -2.05
VPS13C-210ENST00000561258 HMSDA8MTL9 139 aa2.24□□□□□ -2.05
VPS13C-210ENST00000561258 G3V2T6 193 aa2.24□□□□□ -2.05
VPS13C-210ENST00000561258 H3BRN7 92 aa2.24□□□□□ -2.05
VPS13C-210ENST00000561258 M0QZK8 103 aa2.24□□□□□ -2.05
VPS13C-210ENST00000561258 NDUFB3O43676 98 aa2.24□□□□□ -2.05
VPS13C-210ENST00000561258 NDUFC2O95298 119 aa2.24□□□□□ -2.05
VPS13C-210ENST00000561258 NAPSAO96009 420 aa2.24□□□□□ -2.05
VPS13C-210ENST00000561258 IFNA7P01567 189 aa2.24□□□□□ -2.05
VPS13C-210ENST00000561258 SMR3BP02814 79 aaPredicted RBP2.24□□□□□ -2.05
VPS13C-210ENST00000561258 TRGC1P0CF51 173 aa2.24□□□□□ -2.05
VPS13C-210ENST00000561258 PHBP35232 272 aa2.24□□□□□ -2.05
VPS13C-210ENST00000561258 AQP4P55087 323 aa2.24□□□□□ -2.05
VPS13C-210ENST00000561258 YPEL3P61236 119 aaPredicted RBP2.24□□□□□ -2.05
VPS13C-210ENST00000561258 DR1Q01658 176 aa2.24□□□□□ -2.05
VPS13C-210ENST00000561258 LYRM7Q5U5X0 104 aa2.24□□□□□ -2.05
VPS13C-210ENST00000561258 TRAPPC6BQ86SZ2 158 aa2.24□□□□□ -2.05
VPS13C-210ENST00000561258 C4orf3Q8WVX3 66 aa2.24□□□□□ -2.05
VPS13C-210ENST00000561258 MALSU1Q96EH3 234 aa2.24□□□□□ -2.05
VPS13C-210ENST00000561258 ADAT3Q96EY9 351 aaPredicted RBP2.24□□□□□ -2.05
VPS13C-210ENST00000561258 IMUPQ9GZP8 106 aa2.24□□□□□ -2.05
VPS13C-210ENST00000561258 BIN3Q9NQY0 253 aa2.24□□□□□ -2.05
VPS13C-210ENST00000561258 OSTCQ9NRP0 149 aa2.24□□□□□ -2.05
VPS13C-210ENST00000561258 LYRM2Q9NU23 88 aaPredicted RBP2.24□□□□□ -2.05
VPS13C-210ENST00000561258 BAIAP2Q9UQB8 552 aa2.24□□□□□ -2.05
VPS13C-210ENST00000561258 RNF11Q9Y3C5 154 aa2.24□□□□□ -2.05
VPS13C-210ENST00000561258 FSIP2Q5CZC0 6907 aa2.23□□□□□ -2.05
VPS13C-210ENST00000561258 H7C1C5 153 aa2.23□□□□□ -2.05
VPS13C-210ENST00000561258 P0DMU3 169 aa2.23□□□□□ -2.05
VPS13C-210ENST00000561258 FAM231AP0DMU4 169 aa2.23□□□□□ -2.05
VPS13C-210ENST00000561258 FAM231CP0DMU5 169 aa2.23□□□□□ -2.05
VPS13C-210ENST00000561258 DYNLT3P51808 116 aa2.23□□□□□ -2.05
VPS13C-210ENST00000561258 LCN6P62502 163 aa2.23□□□□□ -2.05
VPS13C-210ENST00000561258 SLC38A11Q08AI6 406 aa2.23□□□□□ -2.05
VPS13C-210ENST00000561258 RHEBQ15382 184 aa2.23□□□□□ -2.05
VPS13C-210ENST00000561258 RRN3P1Q2M238 152 aa2.23□□□□□ -2.05
VPS13C-210ENST00000561258 KRTAP6-3Q3LI67 103 aa2.23□□□□□ -2.05
VPS13C-210ENST00000561258 C4orf22Q6V702 233 aa2.23□□□□□ -2.05
VPS13C-210ENST00000561258 LRRC18Q8N456 261 aa2.23□□□□□ -2.05
VPS13C-210ENST00000561258 SPACA4Q8TDM5 124 aa2.23□□□□□ -2.05
VPS13C-210ENST00000561258 ZCCHC13Q8WW36 166 aaKnown RBP2.23□□□□□ -2.05
VPS13C-210ENST00000561258 HSPB9Q9BQS6 159 aa2.23□□□□□ -2.05
VPS13C-210ENST00000561258 TXNDC17Q9BRA2 123 aa2.23□□□□□ -2.05
VPS13C-210ENST00000561258 GINS4Q9BRT9 223 aa2.23□□□□□ -2.05
VPS13C-210ENST00000561258 CKLFQ9UBR5 152 aa2.23□□□□□ -2.05
VPS13C-210ENST00000561258 SMPXQ9UHP9 88 aa2.23□□□□□ -2.05
VPS13C-210ENST00000561258 APLNQ9ULZ1 77 aa2.23□□□□□ -2.05
VPS13C-210ENST00000561258 SLC35A3Q9Y2D2 325 aa2.23□□□□□ -2.05
VPS13C-210ENST00000561258 HILPDAQ9Y5L2 63 aa2.23□□□□□ -2.05
VPS13C-210ENST00000561258 FAT1Q14517 4588 aa2.23□□□□□ -2.05
VPS13C-210ENST00000561258 IGKV1-9A0A0C4DH69 117 aa2.22□□□□□ -2.05
VPS13C-210ENST00000561258 C1orf196B1AJZ1 125 aa2.22□□□□□ -2.05
VPS13C-210ENST00000561258 PPP5D1E7EU14 171 aa2.22□□□□□ -2.05
VPS13C-210ENST00000561258 AIPO00170 330 aa2.22□□□□□ -2.05
VPS13C-210ENST00000561258 CYB5BO43169 146 aa2.22□□□□□ -2.05
VPS13C-210ENST00000561258 HTR1AP08908 422 aa2.22□□□□□ -2.05
VPS13C-210ENST00000561258 IFI6P09912 130 aa2.22□□□□□ -2.05
VPS13C-210ENST00000561258 BRS3P32247 399 aa2.22□□□□□ -2.05
VPS13C-210ENST00000561258 C1orf140Q5VVS0 124 aa2.22□□□□□ -2.05
VPS13C-210ENST00000561258 LCN15Q6UWW0 184 aa2.22□□□□□ -2.05
VPS13C-210ENST00000561258 LINC00322Q6ZN03 302 aaPredicted RBP2.22□□□□□ -2.05
VPS13C-210ENST00000561258 UBE2DNLQ8IWF7 75 aa2.22□□□□□ -2.05
VPS13C-210ENST00000561258 C9orf163Q8N9P6 203 aa2.22□□□□□ -2.05
VPS13C-210ENST00000561258 ZNF439Q8NDP4 499 aa2.22□□□□□ -2.05
VPS13C-210ENST00000561258 OR8D4Q8NGM9 314 aa2.22□□□□□ -2.05
VPS13C-210ENST00000561258 OR9Q1Q8NGQ5 310 aa2.22□□□□□ -2.05
VPS13C-210ENST00000561258 DEFB104AQ8WTQ1 72 aa2.22□□□□□ -2.05
VPS13C-210ENST00000561258 ANP32BQ92688 251 aaKnown RBP2.22□□□□□ -2.05
VPS13C-210ENST00000561258 KAAG1Q9UBP8 84 aa2.22□□□□□ -2.05
VPS13C-210ENST00000561258 SSR3Q9UNL2 185 aa2.22□□□□□ -2.05
VPS13C-210ENST00000561258 A0A0D9SG52 128 aa2.21□□□□□ -2.06
VPS13C-210ENST00000561258 IBA57-AS1B1ANH7 110 aa2.21□□□□□ -2.06
VPS13C-210ENST00000561258 TCL1BO95988 128 aa2.21□□□□□ -2.06
VPS13C-210ENST00000561258 IFNA21P01568 189 aa2.21□□□□□ -2.06
VPS13C-210ENST00000561258 IFNA17P01571 189 aa2.21□□□□□ -2.06
VPS13C-210ENST00000561258 SHBGP04278 402 aa2.21□□□□□ -2.06
VPS13C-210ENST00000561258 HMGN2P05204 90 aaKnown RBP2.21□□□□□ -2.06
VPS13C-210ENST00000561258 METTL15P1P0C7V9 234 aa2.21□□□□□ -2.06
VPS13C-210ENST00000561258 IFI30P13284 250 aa2.21□□□□□ -2.06
VPS13C-210ENST00000561258 NDUFA5Q16718 116 aa2.21□□□□□ -2.06
VPS13C-210ENST00000561258 LELP1Q5T871 98 aa2.21□□□□□ -2.06
VPS13C-210ENST00000561258 OR2T2Q6IF00 324 aa2.21□□□□□ -2.06
VPS13C-210ENST00000561258 DHFR2Q86XF0 187 aa2.21□□□□□ -2.06
VPS13C-210ENST00000561258 C10orf111Q8N326 155 aa2.21□□□□□ -2.06
VPS13C-210ENST00000561258 STX19Q8N4C7 294 aa2.21□□□□□ -2.06
VPS13C-210ENST00000561258 FAM216BQ8N7L0 139 aa2.21□□□□□ -2.06
VPS13C-210ENST00000561258 OR5A1Q8NGJ0 315 aa2.21□□□□□ -2.06
VPS13C-210ENST00000561258 OR13D1Q8NGV5 346 aa2.21□□□□□ -2.06
VPS13C-210ENST00000561258 STAG3L4Q8TBR4 150 aa2.21□□□□□ -2.06
VPS13C-210ENST00000561258 SLAMF6Q96DU3 332 aa2.21□□□□□ -2.06
VPS13C-210ENST00000561258 CCDC115Q96NT0 180 aa2.21□□□□□ -2.06
VPS13C-210ENST00000561258 POPDC3Q9HBV1 291 aa2.21□□□□□ -2.06
VPS13C-210ENST00000561258 A0A096LPI6 279 aa2.2□□□□□ -2.06
VPS13C-210ENST00000561258 IGLV1-51P01701 117 aa2.2□□□□□ -2.06
VPS13C-210ENST00000561258 C1QCP02747 245 aa2.2□□□□□ -2.06
VPS13C-210ENST00000561258 CRYGAP11844 174 aa2.2□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms