RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 Q6ZS46 218 aa12.13□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 MAPKAPK5-AS1Q8N8E1 139 aa12.13□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 C10orf105Q8TEF2 133 aa12.13□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 USMG5Q96IX5 58 aa12.13□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 ERG28Q9UKR5 140 aa12.13□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 TRBV7-9A0A0J9YWB2 115 aa12.13□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 H3BUA1 57 aa12.13□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 M0R381 172 aa12.13□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 APRG1Q8IVJ8 170 aa12.13□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 H3BUX3 64 aa12.12□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 GCSHP23434 173 aa12.12□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 SAMD5Q5TGI4 173 aa12.12□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 SELENOKQ9Y6D0 94 aa12.12□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 ASIPP42127 132 aa12.11□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 BLCAPP62952 87 aa12.11□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 LCNL1Q6ZST4 164 aa12.11□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 RPL39LQ96EH5 51 aaKnown RBP12.11□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 PIMREGQ9BSJ6 248 aa12.11□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 SS18L2Q9UHA2 77 aa12.11□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 SMIM13P0DJ93 91 aa12.11□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 RNASE4P34096 147 aaKnown RBP12.11□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 GAGE5Q13069 117 aa12.11□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 GAGE6Q13070 117 aa12.11□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 C14orf178Q8N769 122 aaPredicted RBP12.11□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 DPH3P1Q9H4G8 78 aa12.11□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 GNRH2O43555 120 aa12.1□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 MED14OSP0DP75 135 aa12.1□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 PF4V1P10720 104 aa12.1□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 SUMO2P61956 95 aaKnown RBP12.1□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 HERV-K104P63124 156 aa12.1□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 SPAG8Q99932 426 aaPredicted RBP12.1□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 TRAV12-1A0A0B4J245 112 aa12.1□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 RNASE3P12724 160 aaKnown RBP12.1□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 S100A4P26447 101 aaKnown RBP12.1□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 PHLDA1Q8WV24 401 aaPredicted RBP12.1□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 TOMM6Q96B49 74 aa12.1□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 C20orf78Q9BR46 151 aa12.1□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 TM2D2Q9BX73 214 aa12.1□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 CYSLTR1Q9Y271 337 aa12.1□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 IGLV1-40P01703 118 aa12.09□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 RPL11P62913 178 aaKnown RBP12.09□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 RHPN1-AS1Q9BWJ2 59 aa12.09□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 PHLDA3Q9Y5J5 127 aa12.09□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 MUC4Q99102 2169 aa12.09□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 NF1P21359 2839 aa12.09□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 NIPBLQ6KC79 2804 aaeCLIP12.09□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 IGKV3-7A0A075B6H7 116 aa12.09□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 PLNP26678 52 aa12.09□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 ORMDL2Q53FV1 153 aa12.09□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 CEND1Q8N111 149 aa12.09□□□□□ -0.47
MSH5-SAPCD1-208ENST00000498473 F8VRH5 84 aa12.08□□□□□ -0.48
MSH5-SAPCD1-208ENST00000498473 H7C1H1 209 aa12.08□□□□□ -0.48
MSH5-SAPCD1-208ENST00000498473 K7ERJ3 54 aa12.08□□□□□ -0.48
MSH5-SAPCD1-208ENST00000498473 EDN2P20800 178 aa12.08□□□□□ -0.48
MSH5-SAPCD1-208ENST00000498473 F8P00451 2351 aa12.08□□□□□ -0.48
MSH5-SAPCD1-208ENST00000498473 SLC25A16P16260 332 aa12.07□□□□□ -0.48
MSH5-SAPCD1-208ENST00000498473 NEXN-AS1Q8NBZ9 246 aa12.07□□□□□ -0.48
MSH5-SAPCD1-208ENST00000498473 SCGB3A1Q96QR1 104 aa12.07□□□□□ -0.48
MSH5-SAPCD1-208ENST00000498473 TNFRSF18Q9Y5U5 241 aa12.07□□□□□ -0.48
MSH5-SAPCD1-208ENST00000498473 CFHR3Q02985 330 aa12.07□□□□□ -0.48
MSH5-SAPCD1-208ENST00000498473 POM121L12Q8N7R1 296 aa12.07□□□□□ -0.48
MSH5-SAPCD1-208ENST00000498473 RNF183Q96D59 192 aa12.07□□□□□ -0.48
MSH5-SAPCD1-208ENST00000498473 SMR3AQ99954 134 aa12.07□□□□□ -0.48
MSH5-SAPCD1-208ENST00000498473 BEX4Q9NWD9 120 aaPredicted RBP12.07□□□□□ -0.48
MSH5-SAPCD1-208ENST00000498473 MGPP08493 103 aa12.06□□□□□ -0.48
MSH5-SAPCD1-208ENST00000498473 K7EMI3 77 aa12.06□□□□□ -0.48
MSH5-SAPCD1-208ENST00000498473 NXPH4O95158 308 aa12.06□□□□□ -0.48
MSH5-SAPCD1-208ENST00000498473 SRD5A1P18405 259 aa12.06□□□□□ -0.48
MSH5-SAPCD1-208ENST00000498473 LINC00315P59091 139 aa12.06□□□□□ -0.48
MSH5-SAPCD1-208ENST00000498473 KIF25-AS1Q9Y6Z4 181 aa12.06□□□□□ -0.48
MSH5-SAPCD1-208ENST00000498473 AGRNO00468 2067 aa12.06□□□□□ -0.48
MSH5-SAPCD1-208ENST00000498473 GATA3P23771 443 aa12.05□□□□□ -0.48
MSH5-SAPCD1-208ENST00000498473 RAX2Q96IS3 184 aa12.05□□□□□ -0.48
MSH5-SAPCD1-208ENST00000498473 DAZ1Q9NQZ3 744 aaKnown RBP12.05□□□□□ -0.48
MSH5-SAPCD1-208ENST00000498473 A0A096LNT2 108 aa12.05□□□□□ -0.48
MSH5-SAPCD1-208ENST00000498473 KLLNB2CW77 178 aa12.05□□□□□ -0.48
MSH5-SAPCD1-208ENST00000498473 AVPP01185 164 aa12.05□□□□□ -0.48
MSH5-SAPCD1-208ENST00000498473 C2orf66Q6UXQ4 117 aa12.05□□□□□ -0.48
MSH5-SAPCD1-208ENST00000498473 NHP2Q9NX24 153 aaKnown RBP12.05□□□□□ -0.48
MSH5-SAPCD1-208ENST00000498473 SPINK8P0C7L1 97 aa12.04□□□□□ -0.48
MSH5-SAPCD1-208ENST00000498473 WFDC2Q14508 124 aa12.04□□□□□ -0.48
MSH5-SAPCD1-208ENST00000498473 TAL2Q16559 108 aa12.04□□□□□ -0.48
MSH5-SAPCD1-208ENST00000498473 BAALCQ8WXS3 180 aa12.04□□□□□ -0.48
MSH5-SAPCD1-208ENST00000498473 MSMBP08118 114 aa12.03□□□□□ -0.48
MSH5-SAPCD1-208ENST00000498473 DCANP1Q8TF63 244 aa12.03□□□□□ -0.48
MSH5-SAPCD1-208ENST00000498473 K7EMT4 169 aa12.02□□□□□ -0.48
MSH5-SAPCD1-208ENST00000498473 TRBV7-3A0A075B6L6 115 aa12.02□□□□□ -0.49
MSH5-SAPCD1-208ENST00000498473 JPT2Q9H910 190 aa12.02□□□□□ -0.49
MSH5-SAPCD1-208ENST00000498473 PRSS29PA6NIE9 313 aa12.01□□□□□ -0.49
MSH5-SAPCD1-208ENST00000498473 ANK3Q12955 4377 aaKnown RBP12.01□□□□□ -0.49
MSH5-SAPCD1-208ENST00000498473 IGHV4OR15-8A0A075B7B6 117 aa12.01□□□□□ -0.49
MSH5-SAPCD1-208ENST00000498473 A0A087WW49 117 aa12.01□□□□□ -0.49
MSH5-SAPCD1-208ENST00000498473 MYMXA0A1B0GTQ4 84 aa12.01□□□□□ -0.49
MSH5-SAPCD1-208ENST00000498473 IGLL5B9A064 214 aa12.01□□□□□ -0.49
MSH5-SAPCD1-208ENST00000498473 E9PLD3 99 aa12.01□□□□□ -0.49
MSH5-SAPCD1-208ENST00000498473 LINC01619G3V211 115 aa12.01□□□□□ -0.49
MSH5-SAPCD1-208ENST00000498473 RPL32P62910 135 aaKnown RBP12.01□□□□□ -0.49
MSH5-SAPCD1-208ENST00000498473 ETDBQ3ZM63 59 aa12.01□□□□□ -0.49
MSH5-SAPCD1-208ENST00000498473 ANAPC13Q9BS18 74 aa12.01□□□□□ -0.49
MSH5-SAPCD1-208ENST00000498473 PPP1R17O96001 155 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 96 ms