RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 FAM24BQ8N5W8 94 aa3.1□□□□□ -1.91
USH2A-202ENST00000366942 ZNF646O15015 1829 aaPredicted RBP3.1□□□□□ -1.91
USH2A-202ENST00000366942 M0R2T5 61 aa3.09□□□□□ -1.91
USH2A-202ENST00000366942 PIK3CD-AS1Q5SR53 167 aa3.09□□□□□ -1.91
USH2A-202ENST00000366942 SBF1O95248 1867 aa3.09□□□□□ -1.91
USH2A-202ENST00000366942 IGKV1D-8A0A087WSZ0 117 aa3.09□□□□□ -1.91
USH2A-202ENST00000366942 ASPHD1Q5U4P2 390 aa3.09□□□□□ -1.91
USH2A-202ENST00000366942 Q6ZSR3 168 aa3.09□□□□□ -1.91
USH2A-202ENST00000366942 DEFB104AQ8WTQ1 72 aa3.09□□□□□ -1.91
USH2A-202ENST00000366942 C2orf48Q96LS8 159 aa3.09□□□□□ -1.91
USH2A-202ENST00000366942 OSTCQ9NRP0 149 aa3.09□□□□□ -1.91
USH2A-202ENST00000366942 KIAA1217Q5T5P2 1943 aa3.09□□□□□ -1.91
USH2A-202ENST00000366942 PROK1P58294 105 aa3.09□□□□□ -1.91
USH2A-202ENST00000366942 MSMPQ1L6U9 139 aa3.09□□□□□ -1.91
USH2A-202ENST00000366942 SPINK6Q6UWN8 80 aa3.09□□□□□ -1.91
USH2A-202ENST00000366942 FAM19A5Q7Z5A7 132 aaPredicted RBP3.09□□□□□ -1.91
USH2A-202ENST00000366942 C20orf78Q9BR46 151 aa3.09□□□□□ -1.91
USH2A-202ENST00000366942 KIF13BQ9NQT8 1826 aa3.09□□□□□ -1.91
USH2A-202ENST00000366942 A8MWP6 167 aa3.09□□□□□ -1.92
USH2A-202ENST00000366942 USP17L23D6RBM5 183 aa3.09□□□□□ -1.92
USH2A-202ENST00000366942 ANKRD39Q53RE8 183 aa3.09□□□□□ -1.92
USH2A-202ENST00000366942 LINC01590Q5TEZ4 76 aa3.09□□□□□ -1.92
USH2A-202ENST00000366942 Q6ZR03 302 aa3.09□□□□□ -1.92
USH2A-202ENST00000366942 DHRS4-AS1Q9P1J3 65 aa3.09□□□□□ -1.92
USH2A-202ENST00000366942 TMA7Q9Y2S6 64 aaKnown RBP3.09□□□□□ -1.92
USH2A-202ENST00000366942 MAST4O15021 2626 aa3.09□□□□□ -1.92
USH2A-202ENST00000366942 CROCCQ5TZA2 2017 aa3.09□□□□□ -1.92
USH2A-202ENST00000366942 H0YGX0 51 aa3.09□□□□□ -1.92
USH2A-202ENST00000366942 PROP1O75360 226 aa3.09□□□□□ -1.92
USH2A-202ENST00000366942 NDUFA3O95167 84 aa3.09□□□□□ -1.92
USH2A-202ENST00000366942 IGLV1-51P01701 117 aa3.09□□□□□ -1.92
USH2A-202ENST00000366942 COX7BP24311 80 aa3.09□□□□□ -1.92
USH2A-202ENST00000366942 EIF4EBP1Q13541 118 aaPredicted RBP3.09□□□□□ -1.92
USH2A-202ENST00000366942 C11orf71Q6IPW1 123 aa3.09□□□□□ -1.92
USH2A-202ENST00000366942 NDUFA4L2Q9NRX3 87 aa3.09□□□□□ -1.92
USH2A-202ENST00000366942 POLR3KQ9Y2Y1 108 aaPredicted RBP3.09□□□□□ -1.92
USH2A-202ENST00000366942 DSCAMO60469 2012 aa3.09□□□□□ -1.92
USH2A-202ENST00000366942 A0A0J9YX75 114 aa3.08□□□□□ -1.92
USH2A-202ENST00000366942 C4orf51C9J302 202 aa3.08□□□□□ -1.92
USH2A-202ENST00000366942 HIGD2BQ4VC39 106 aa3.08□□□□□ -1.92
USH2A-202ENST00000366942 IZUMO1RA6ND01 250 aa3.08□□□□□ -1.92
USH2A-202ENST00000366942 LST1O00453 97 aa3.08□□□□□ -1.92
USH2A-202ENST00000366942 CRIP2P52943 208 aaPredicted RBP3.08□□□□□ -1.92
USH2A-202ENST00000366942 Q6P435 159 aa3.08□□□□□ -1.92
USH2A-202ENST00000366942 IFI27L1Q96BM0 104 aa3.08□□□□□ -1.92
USH2A-202ENST00000366942 LAMB1P07942 1786 aa3.08□□□□□ -1.92
USH2A-202ENST00000366942 H3BQ15 152 aa3.08□□□□□ -1.92
USH2A-202ENST00000366942 H3BRN7 92 aa3.08□□□□□ -1.92
USH2A-202ENST00000366942 NREPQ16612 68 aa3.08□□□□□ -1.92
USH2A-202ENST00000366942 LINC00114Q6XXX2 140 aa3.08□□□□□ -1.92
USH2A-202ENST00000366942 NBDYA0A0U1RRE5 68 aa3.08□□□□□ -1.92
USH2A-202ENST00000366942 JMJD7-PLA2G4BH0Y9G9 81 aa3.08□□□□□ -1.92
USH2A-202ENST00000366942 POU2AF1Q16633 256 aa3.08□□□□□ -1.92
USH2A-202ENST00000366942 LINC01556Q5JQF7 62 aa3.08□□□□□ -1.92
USH2A-202ENST00000366942 Q8N2B8 174 aa3.08□□□□□ -1.92
USH2A-202ENST00000366942 MGST2Q99735 147 aa3.08□□□□□ -1.92
USH2A-202ENST00000366942 FANCMQ8IYD8 2048 aa3.08□□□□□ -1.92
USH2A-202ENST00000366942 MUC21A0A0G2JKD1 596 aa3.08□□□□□ -1.92
USH2A-202ENST00000366942 MUC21A0A140T8X8 626 aa3.08□□□□□ -1.92
USH2A-202ENST00000366942 FXYD1O00168 92 aa3.08□□□□□ -1.92
USH2A-202ENST00000366942 IGLV2-14P01704 120 aa3.08□□□□□ -1.92
USH2A-202ENST00000366942 PYYP10082 97 aa3.08□□□□□ -1.92
USH2A-202ENST00000366942 OTX1P32242 354 aaPredicted RBP3.08□□□□□ -1.92
USH2A-202ENST00000366942 Q6ZS49 121 aa3.08□□□□□ -1.92
USH2A-202ENST00000366942 TRBV19A0A075B6N1 114 aa3.07□□□□□ -1.92
USH2A-202ENST00000366942 PCP4L1A6NKN8 68 aa3.07□□□□□ -1.92
USH2A-202ENST00000366942 CXCL3P19876 107 aa3.07□□□□□ -1.92
USH2A-202ENST00000366942 Q6ZVQ6 151 aa3.07□□□□□ -1.92
USH2A-202ENST00000366942 BAALCQ8WXS3 180 aa3.07□□□□□ -1.92
USH2A-202ENST00000366942 ARAP2Q8WZ64 1704 aa3.07□□□□□ -1.92
USH2A-202ENST00000366942 SMIM27A0A1W2PRY6 76 aa3.07□□□□□ -1.92
USH2A-202ENST00000366942 NANOS3P60323 173 aaKnown RBP3.07□□□□□ -1.92
USH2A-202ENST00000366942 SAMD5Q5TGI4 173 aa3.07□□□□□ -1.92
USH2A-202ENST00000366942 MRPL35Q9NZE8 188 aaKnown RBP3.07□□□□□ -1.92
USH2A-202ENST00000366942 ZNF580Q9UK33 172 aa3.07□□□□□ -1.92
USH2A-202ENST00000366942 TEX22C9J3V5 150 aa3.07□□□□□ -1.92
USH2A-202ENST00000366942 PRSS46E5RG02 174 aa3.07□□□□□ -1.92
USH2A-202ENST00000366942 ZNF73O43830 326 aaPredicted RBP3.07□□□□□ -1.92
USH2A-202ENST00000366942 GAGE2AQ6NT46 116 aa3.07□□□□□ -1.92
USH2A-202ENST00000366942 Q6ZVH6 145 aa3.07□□□□□ -1.92
USH2A-202ENST00000366942 EXOC3-AS1Q8N2X6 119 aa3.07□□□□□ -1.92
USH2A-202ENST00000366942 COX7B2Q8TF08 81 aa3.07□□□□□ -1.92
USH2A-202ENST00000366942 SPANXDQ9BXN6 97 aa3.07□□□□□ -1.92
USH2A-202ENST00000366942 USP9YO00507 2555 aaPredicted RBP3.07□□□□□ -1.92
USH2A-202ENST00000366942 Q5BKY6 102 aa3.07□□□□□ -1.92
USH2A-202ENST00000366942 A0A096LNI7 61 aa3.07□□□□□ -1.92
USH2A-202ENST00000366942 HIGD1CA8MV81 97 aa3.07□□□□□ -1.92
USH2A-202ENST00000366942 K7EQG2 157 aa3.07□□□□□ -1.92
USH2A-202ENST00000366942 IGKCP01834 107 aa3.07□□□□□ -1.92
USH2A-202ENST00000366942 FOXA3P55318 350 aaPredicted RBP3.07□□□□□ -1.92
USH2A-202ENST00000366942 HAMPP81172 84 aa3.07□□□□□ -1.92
USH2A-202ENST00000366942 C5orf47Q569G3 176 aa3.07□□□□□ -1.92
USH2A-202ENST00000366942 CIRBP-AS1Q8TBR5 109 aa3.07□□□□□ -1.92
USH2A-202ENST00000366942 CHCHD10Q8WYQ3 142 aaPredicted RBP3.07□□□□□ -1.92
USH2A-202ENST00000366942 SETXQ7Z333 2677 aaKnown RBP3.07□□□□□ -1.92
USH2A-202ENST00000366942 FRMPD3Q5JV73 1810 aa3.06□□□□□ -1.92
USH2A-202ENST00000366942 IGLV11-55A0A075B6I3 123 aa3.06□□□□□ -1.92
USH2A-202ENST00000366942 AMN1Q8IY45 258 aa3.06□□□□□ -1.92
USH2A-202ENST00000366942 KIAA1671Q9BY89 1806 aa3.06□□□□□ -1.92
USH2A-202ENST00000366942 SHANK1Q9Y566 2161 aa3.06□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms