RNA–Protein interactions for RNA: ENST00000339162.11

PDLIM2-203, Transcript of PDZ and LIM domain 2, humanhuman

TSL 1 (best) BASIC

Gene PDLIM2, Length 2,226 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-203ENST00000339162 H0Y8G0 127 aa16.43■□□□□ 0.22
PDLIM2-203ENST00000339162 TMEM70Q9BUB7 260 aa16.43■□□□□ 0.22
PDLIM2-203ENST00000339162 MCRIP2Q9BUT9 160 aaKnown RBP16.43■□□□□ 0.22
PDLIM2-203ENST00000339162 SPATA3Q8NHX4 192 aa16.43■□□□□ 0.22
PDLIM2-203ENST00000339162 RPL39LQ96EH5 51 aaKnown RBP16.43■□□□□ 0.22
PDLIM2-203ENST00000339162 KIF25-AS1Q9Y6Z4 181 aa16.43■□□□□ 0.22
PDLIM2-203ENST00000339162 LINC00482Q8N8I6 264 aa16.42■□□□□ 0.22
PDLIM2-203ENST00000339162 MRAP2Q96G30 205 aa16.42■□□□□ 0.22
PDLIM2-203ENST00000339162 MIEN1Q9BRT3 115 aa16.42■□□□□ 0.22
PDLIM2-203ENST00000339162 PAM16Q9Y3D7 125 aa16.42■□□□□ 0.22
PDLIM2-203ENST00000339162 LINC00315P59091 139 aa16.42■□□□□ 0.22
PDLIM2-203ENST00000339162 FAM74A4Q5TZK3 123 aa16.42■□□□□ 0.22
PDLIM2-203ENST00000339162 RASL10AQ92737 203 aa16.42■□□□□ 0.22
PDLIM2-203ENST00000339162 NOTCH3Q9UM47 2321 aa16.42■□□□□ 0.22
PDLIM2-203ENST00000339162 TRGV11A0A075B6L2 103 aa16.41■□□□□ 0.22
PDLIM2-203ENST00000339162 SMIM17P0DL12 118 aa16.41■□□□□ 0.22
PDLIM2-203ENST00000339162 LINC01587Q99440 93 aa16.41■□□□□ 0.22
PDLIM2-203ENST00000339162 SYS1-DBNDD2H3BUS1 97 aa16.41■□□□□ 0.22
PDLIM2-203ENST00000339162 TRPT1Q86TN4 253 aaKnown RBP16.4■□□□□ 0.22
PDLIM2-203ENST00000339162 VAMP8Q9BV40 100 aa16.4■□□□□ 0.22
PDLIM2-203ENST00000339162 HSPB8Q9UJY1 196 aa16.4■□□□□ 0.22
PDLIM2-203ENST00000339162 IGLV2-18A0A075B6J9 118 aa16.39■□□□□ 0.22
PDLIM2-203ENST00000339162 ZNF876PQ49A33 203 aa16.39■□□□□ 0.22
PDLIM2-203ENST00000339162 ZNF705AQ6ZN79 300 aaPredicted RBP16.39■□□□□ 0.22
PDLIM2-203ENST00000339162 ZNF747Q9BV97 191 aa16.39■□□□□ 0.22
PDLIM2-203ENST00000339162 NXT2Q9NPJ8 142 aaKnown RBP16.39■□□□□ 0.22
PDLIM2-203ENST00000339162 TEP1Q99973 2627 aaKnown RBP16.39■□□□□ 0.21
PDLIM2-203ENST00000339162 BAHCC1Q9P281 2608 aa16.39■□□□□ 0.21
PDLIM2-203ENST00000339162 INSP01308 110 aa16.39■□□□□ 0.21
PDLIM2-203ENST00000339162 IGHV3OR16-12A0A075B7B8 117 aa16.38■□□□□ 0.21
PDLIM2-203ENST00000339162 MAJINQ3KP22 176 aa16.38■□□□□ 0.21
PDLIM2-203ENST00000339162 Q8N8P6 123 aa16.38■□□□□ 0.21
PDLIM2-203ENST00000339162 SYT8Q8NBV8 401 aa16.38■□□□□ 0.21
PDLIM2-203ENST00000339162 MAP1LC3CQ9BXW4 147 aa16.38■□□□□ 0.21
PDLIM2-203ENST00000339162 F5H697 171 aa16.38■□□□□ 0.21
PDLIM2-203ENST00000339162 HBDP02042 147 aa16.38■□□□□ 0.21
PDLIM2-203ENST00000339162 BEAN1Q3B7T3 259 aa16.38■□□□□ 0.21
PDLIM2-203ENST00000339162 C19orf73Q9NVV2 129 aa16.37■□□□□ 0.21
PDLIM2-203ENST00000339162 CLUHP3Q96NS8 147 aa16.36■□□□□ 0.21
PDLIM2-203ENST00000339162 PMCHL2Q9BQD1 86 aa16.36■□□□□ 0.21
PDLIM2-203ENST00000339162 TMEM208Q9BTX3 173 aa16.36■□□□□ 0.21
PDLIM2-203ENST00000339162 CYSRT1A8MQ03 144 aa16.35■□□□□ 0.21
PDLIM2-203ENST00000339162 SUMO4Q6EEV6 95 aa16.35■□□□□ 0.21
PDLIM2-203ENST00000339162 LINC01546A6NGU7 62 aa16.35■□□□□ 0.21
PDLIM2-203ENST00000339162 CRYGDP07320 174 aa16.35■□□□□ 0.21
PDLIM2-203ENST00000339162 RPL35AP18077 110 aaKnown RBP16.35■□□□□ 0.21
PDLIM2-203ENST00000339162 SUMO2P61956 95 aaKnown RBP16.35■□□□□ 0.21
PDLIM2-203ENST00000339162 POM121L12Q8N7R1 296 aa16.35■□□□□ 0.21
PDLIM2-203ENST00000339162 C18orf15Q96N68 181 aa16.35■□□□□ 0.21
PDLIM2-203ENST00000339162 PRSS47A8MTI9 375 aa16.34■□□□□ 0.21
PDLIM2-203ENST00000339162 C1orf158Q8N1D5 194 aa16.34■□□□□ 0.21
PDLIM2-203ENST00000339162 DEFB104AQ8WTQ1 72 aa16.34■□□□□ 0.21
PDLIM2-203ENST00000339162 TMEM158Q8WZ71 300 aa16.34■□□□□ 0.21
PDLIM2-203ENST00000339162 SMIM2Q9BVW6 85 aa16.34■□□□□ 0.21
PDLIM2-203ENST00000339162 AZU1P20160 251 aa16.33■□□□□ 0.2
PDLIM2-203ENST00000339162 ZNF56Q15929 161 aa16.33■□□□□ 0.2
PDLIM2-203ENST00000339162 NEGR1Q7Z3B1 354 aa16.33■□□□□ 0.2
PDLIM2-203ENST00000339162 DEFB125Q8N687 156 aa16.33■□□□□ 0.2
PDLIM2-203ENST00000339162 CITED1Q99966 193 aa16.33■□□□□ 0.2
PDLIM2-203ENST00000339162 FCER1GP30273 86 aa16.32■□□□□ 0.2
PDLIM2-203ENST00000339162 CMC4P56277 68 aaPredicted RBP16.32■□□□□ 0.2
PDLIM2-203ENST00000339162 SPATA45Q537H7 98 aa16.31■□□□□ 0.2
PDLIM2-203ENST00000339162 C11orf72Q8NBR9 251 aa16.31■□□□□ 0.2
PDLIM2-203ENST00000339162 IGHV3-73A0A0B4J1V6 119 aa16.31■□□□□ 0.2
PDLIM2-203ENST00000339162 ZNF415Q09FC8 603 aa16.31■□□□□ 0.2
PDLIM2-203ENST00000339162 LAGE3Q14657 143 aa16.31■□□□□ 0.2
PDLIM2-203ENST00000339162 GIG44P09565 113 aaPredicted RBP16.3■□□□□ 0.2
PDLIM2-203ENST00000339162 PET117Q6UWS5 81 aa16.3■□□□□ 0.2
PDLIM2-203ENST00000339162 C20orf78Q9BR46 151 aa16.3■□□□□ 0.2
PDLIM2-203ENST00000339162 IFI27L1Q96BM0 104 aa16.29■□□□□ 0.2
PDLIM2-203ENST00000339162 FAM110AQ9BQ89 295 aa16.29■□□□□ 0.2
PDLIM2-203ENST00000339162 CSTL1Q9H114 145 aa16.29■□□□□ 0.2
PDLIM2-203ENST00000339162 TRRAPQ9Y4A5 3859 aa16.29■□□□□ 0.2
PDLIM2-203ENST00000339162 C20orf202A1L168 122 aa16.29■□□□□ 0.2
PDLIM2-203ENST00000339162 M0R2P5 195 aa16.29■□□□□ 0.2
PDLIM2-203ENST00000339162 MRPL16Q9NX20 251 aaKnown RBP16.28■□□□□ 0.2
PDLIM2-203ENST00000339162 LINC00467Q9BRT7 94 aa16.27■□□□□ 0.2
PDLIM2-203ENST00000339162 LINC01545Q5VT33 79 aa16.27■□□□□ 0.19
PDLIM2-203ENST00000339162 ST20Q9HBF5 79 aa16.27■□□□□ 0.19
PDLIM2-203ENST00000339162 M0QY20 66 aa16.26■□□□□ 0.19
PDLIM2-203ENST00000339162 NUDT3O95989 172 aa16.26■□□□□ 0.19
PDLIM2-203ENST00000339162 ZNF25P17030 456 aaPredicted RBP16.26■□□□□ 0.19
PDLIM2-203ENST00000339162 G0S2P27469 103 aa16.26■□□□□ 0.19
PDLIM2-203ENST00000339162 TRAV9-2A0A087WT02 112 aa16.26■□□□□ 0.19
PDLIM2-203ENST00000339162 hDV102S1A0JD36 115 aa16.26■□□□□ 0.19
PDLIM2-203ENST00000339162 PPP1R17O96001 155 aa16.26■□□□□ 0.19
PDLIM2-203ENST00000339162 MORN3Q6PF18 240 aaPredicted RBP16.26■□□□□ 0.19
PDLIM2-203ENST00000339162 IGLL1P15814 213 aa16.25■□□□□ 0.19
PDLIM2-203ENST00000339162 UQCR10Q9UDW1 63 aa16.24■□□□□ 0.19
PDLIM2-203ENST00000339162 IGLC3P0DOY3 106 aa16.23■□□□□ 0.19
PDLIM2-203ENST00000339162 GAGE1Q13065 139 aa16.23■□□□□ 0.19
PDLIM2-203ENST00000339162 C9orf66Q5T8R8 295 aa16.23■□□□□ 0.19
PDLIM2-203ENST00000339162 SDHAF1A6NFY7 115 aa16.23■□□□□ 0.19
PDLIM2-203ENST00000339162 P0DMU3 169 aa16.22■□□□□ 0.19
PDLIM2-203ENST00000339162 FAM231AP0DMU4 169 aa16.22■□□□□ 0.19
PDLIM2-203ENST00000339162 FAM231CP0DMU5 169 aa16.22■□□□□ 0.19
PDLIM2-203ENST00000339162 POLR2KP53803 58 aaKnown RBP16.22■□□□□ 0.19
PDLIM2-203ENST00000339162 DLEU1O43261 78 aa16.22■□□□□ 0.19
PDLIM2-203ENST00000339162 INSL3P51460 131 aa16.21■□□□□ 0.19
PDLIM2-203ENST00000339162 ORMDL2Q53FV1 153 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms