RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 IGLV2-8P01709 118 aa13.39□□□□□ -0.27
SYNPO-201ENST00000307662 LOXL1Q08397 574 aaPredicted RBP13.39□□□□□ -0.27
SYNPO-201ENST00000307662 JMJD7-PLA2G4BH0Y9G9 81 aa13.38□□□□□ -0.27
SYNPO-201ENST00000307662 CRYGBP07316 175 aa13.38□□□□□ -0.27
SYNPO-201ENST00000307662 HIST2H2BCQ6DN03 193 aa13.38□□□□□ -0.27
SYNPO-201ENST00000307662 TNRC6AQ8NDV7 1962 aaKnown RBP13.38□□□□□ -0.27
SYNPO-201ENST00000307662 PRB1P04280 392 aa13.38□□□□□ -0.27
SYNPO-201ENST00000307662 ATP5G1P05496 136 aa13.38□□□□□ -0.27
SYNPO-201ENST00000307662 P0C879 139 aa13.38□□□□□ -0.27
SYNPO-201ENST00000307662 ABCA4P78363 2273 aa13.38□□□□□ -0.27
SYNPO-201ENST00000307662 RMI2Q96E14 147 aa13.38□□□□□ -0.27
SYNPO-201ENST00000307662 C5orf47Q569G3 176 aa13.37□□□□□ -0.27
SYNPO-201ENST00000307662 H3BQ85 93 aa13.37□□□□□ -0.27
SYNPO-201ENST00000307662 Q6ZQT7 251 aa13.37□□□□□ -0.27
SYNPO-201ENST00000307662 TMEM61Q8N0U2 210 aa13.37□□□□□ -0.27
SYNPO-201ENST00000307662 YPEL4Q96NS1 127 aa13.37□□□□□ -0.27
SYNPO-201ENST00000307662 PCNX1Q96RV3 2341 aa13.37□□□□□ -0.27
SYNPO-201ENST00000307662 E7EUB6 86 aa13.37□□□□□ -0.27
SYNPO-201ENST00000307662 AJUBAQ96IF1 538 aa13.37□□□□□ -0.27
SYNPO-201ENST00000307662 MRPL23Q16540 153 aaKnown RBP13.37□□□□□ -0.27
SYNPO-201ENST00000307662 GDF5OSQ5U4N7 250 aa13.36□□□□□ -0.27
SYNPO-201ENST00000307662 SP5Q6BEB4 398 aaPredicted RBP13.36□□□□□ -0.27
SYNPO-201ENST00000307662 LECT2O14960 151 aa13.36□□□□□ -0.27
SYNPO-201ENST00000307662 Q8N1Y9 231 aa13.36□□□□□ -0.27
SYNPO-201ENST00000307662 LINC00643Q86TS7 51 aa13.36□□□□□ -0.27
SYNPO-201ENST00000307662 VSIG2Q96IQ7 327 aa13.36□□□□□ -0.27
SYNPO-201ENST00000307662 IGHV1-58A0A0C4DH39 117 aa13.35□□□□□ -0.27
SYNPO-201ENST00000307662 CREBBPQ92793 2442 aa13.35□□□□□ -0.27
SYNPO-201ENST00000307662 IGHV4-4A0A075B6R2 117 aa13.35□□□□□ -0.27
SYNPO-201ENST00000307662 WT1P19544 449 aaPredicted RBP13.35□□□□□ -0.27
SYNPO-201ENST00000307662 MT-ATP8P03928 68 aa13.35□□□□□ -0.27
SYNPO-201ENST00000307662 NDUFV3P56181 108 aaKnown RBP13.35□□□□□ -0.27
SYNPO-201ENST00000307662 SPANXB1Q9NS25 103 aaPredicted RBP13.35□□□□□ -0.27
SYNPO-201ENST00000307662 A0A0J9YY99 117 aa13.34□□□□□ -0.27
SYNPO-201ENST00000307662 APRG1Q8IVJ8 170 aa13.34□□□□□ -0.27
SYNPO-201ENST00000307662 Q8N9W7 124 aa13.33□□□□□ -0.28
SYNPO-201ENST00000307662 VPREB3Q9UKI3 123 aa13.33□□□□□ -0.28
SYNPO-201ENST00000307662 GTF3C1Q12789 2109 aa13.33□□□□□ -0.28
SYNPO-201ENST00000307662 LINC00322Q6ZN03 302 aaPredicted RBP13.33□□□□□ -0.28
SYNPO-201ENST00000307662 COX7A2LO14548 114 aa13.33□□□□□ -0.28
SYNPO-201ENST00000307662 IGHV4-59P01825 116 aa13.33□□□□□ -0.28
SYNPO-201ENST00000307662 DEFB112Q30KQ8 113 aa13.33□□□□□ -0.28
SYNPO-201ENST00000307662 C16orf74Q96GX8 76 aa13.33□□□□□ -0.28
SYNPO-201ENST00000307662 Q96MF0 132 aa13.33□□□□□ -0.28
SYNPO-201ENST00000307662 IGKV1D-37A0A075B6S9 117 aa13.32□□□□□ -0.28
SYNPO-201ENST00000307662 NREPQ16612 68 aa13.32□□□□□ -0.28
SYNPO-201ENST00000307662 MALRD1Q5VYJ5 2156 aa13.32□□□□□ -0.28
SYNPO-201ENST00000307662 RBX1P62877 108 aa13.32□□□□□ -0.28
SYNPO-201ENST00000307662 NDUFS5O43920 106 aa13.32□□□□□ -0.28
SYNPO-201ENST00000307662 ZNF295-AS1Q8N0V1 137 aa13.32□□□□□ -0.28
SYNPO-201ENST00000307662 IGF2-ASQ6U949 168 aa13.31□□□□□ -0.28
SYNPO-201ENST00000307662 C20orf203Q8NBC4 194 aa13.31□□□□□ -0.28
SYNPO-201ENST00000307662 WFDC9Q8NEX5 89 aa13.31□□□□□ -0.28
SYNPO-201ENST00000307662 TM2D2Q9BX73 214 aa13.31□□□□□ -0.28
SYNPO-201ENST00000307662 DKK4Q9UBT3 224 aa13.31□□□□□ -0.28
SYNPO-201ENST00000307662 IGHV3-30-3P0DP02 117 aa13.31□□□□□ -0.28
SYNPO-201ENST00000307662 PLA2G5P39877 138 aa13.31□□□□□ -0.28
SYNPO-201ENST00000307662 TRBV7-3A0A075B6L6 115 aa13.3□□□□□ -0.28
SYNPO-201ENST00000307662 IGKV2D-24A0A075B6R9 120 aa13.3□□□□□ -0.28
SYNPO-201ENST00000307662 DEFB136Q30KP8 78 aa13.3□□□□□ -0.28
SYNPO-201ENST00000307662 ETDCA0A1B0GVM5 59 aa13.3□□□□□ -0.28
SYNPO-201ENST00000307662 IGLV1-47P01700 117 aa13.3□□□□□ -0.28
SYNPO-201ENST00000307662 MP68P56378 58 aa13.3□□□□□ -0.28
SYNPO-201ENST00000307662 MIAQ16674 131 aa13.3□□□□□ -0.28
SYNPO-201ENST00000307662 TP73-AS1Q9UF72 201 aa13.3□□□□□ -0.28
SYNPO-201ENST00000307662 IGHV4-28A0A0C4DH34 117 aa13.3□□□□□ -0.28
SYNPO-201ENST00000307662 NFE4Q86UQ8 179 aa13.3□□□□□ -0.28
SYNPO-201ENST00000307662 GYPEP15421 78 aa13.3□□□□□ -0.28
SYNPO-201ENST00000307662 TP53TG3Q9ULZ0 132 aa13.3□□□□□ -0.28
SYNPO-201ENST00000307662 SLURP1P55000 103 aa13.29□□□□□ -0.28
SYNPO-201ENST00000307662 UBE2BP63146 152 aa13.29□□□□□ -0.28
SYNPO-201ENST00000307662 C5orf56Q8N8D9 126 aa13.29□□□□□ -0.28
SYNPO-201ENST00000307662 MBD6Q96DN6 1003 aa13.29□□□□□ -0.28
SYNPO-201ENST00000307662 CAMK2N2Q96S95 79 aa13.29□□□□□ -0.28
SYNPO-201ENST00000307662 MLST8Q9BVC4 326 aa13.29□□□□□ -0.28
SYNPO-201ENST00000307662 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.28□□□□□ -0.28
SYNPO-201ENST00000307662 COL4A3Q01955 1670 aa13.28□□□□□ -0.28
SYNPO-201ENST00000307662 MIR7-3HGQ8N6C7 128 aa13.28□□□□□ -0.28
SYNPO-201ENST00000307662 IGLV10-54A0A075B6I4 117 aa13.28□□□□□ -0.28
SYNPO-201ENST00000307662 K7EMT4 169 aa13.28□□□□□ -0.28
SYNPO-201ENST00000307662 TMEM256-PLSCR3K7ERE1 68 aa13.28□□□□□ -0.28
SYNPO-201ENST00000307662 PCNX2A6NKB5 2137 aa13.27□□□□□ -0.28
SYNPO-201ENST00000307662 NCR3O14931 201 aa13.27□□□□□ -0.28
SYNPO-201ENST00000307662 ZNF80P51504 273 aaPredicted RBP13.27□□□□□ -0.28
SYNPO-201ENST00000307662 CCL24O00175 119 aa13.27□□□□□ -0.29
SYNPO-201ENST00000307662 Q6ZPA2 131 aa13.27□□□□□ -0.29
SYNPO-201ENST00000307662 MDFICQ9P1T7 246 aa13.27□□□□□ -0.29
SYNPO-201ENST00000307662 SPRY4Q9C004 299 aa13.27□□□□□ -0.29
SYNPO-201ENST00000307662 Q9HAA7 133 aa13.26□□□□□ -0.29
SYNPO-201ENST00000307662 OBSL1O75147 1896 aa13.26□□□□□ -0.29
SYNPO-201ENST00000307662 A0A0J9YXY3 114 aa13.26□□□□□ -0.29
SYNPO-201ENST00000307662 BLCAPP62952 87 aa13.26□□□□□ -0.29
SYNPO-201ENST00000307662 BRWD1-AS2P59051 145 aa13.26□□□□□ -0.29
SYNPO-201ENST00000307662 C14orf132Q9NPU4 83 aa13.26□□□□□ -0.29
SYNPO-201ENST00000307662 UQCRQO14949 82 aa13.26□□□□□ -0.29
SYNPO-201ENST00000307662 IGLC6P0CF74 106 aa13.26□□□□□ -0.29
SYNPO-201ENST00000307662 GRNP28799 593 aaKnown RBP13.26□□□□□ -0.29
SYNPO-201ENST00000307662 TEX49A0A1B0GTD5 131 aa13.26□□□□□ -0.29
SYNPO-201ENST00000307662 NOTCH3Q9UM47 2321 aa13.25□□□□□ -0.29
SYNPO-201ENST00000307662 RPL18AQ02543 176 aaKnown RBP13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms