RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 HSPB8Q9UJY1 196 aa10.76□□□□□ -0.69
VRK3-217ENST00000599538 ZNF124Q15973 351 aa10.76□□□□□ -0.69
VRK3-217ENST00000599538 SPINK13Q1W4C9 94 aa10.76□□□□□ -0.69
VRK3-217ENST00000599538 NRACQ8N912 160 aa10.76□□□□□ -0.69
VRK3-217ENST00000599538 OR9G4Q8NGQ1 327 aa10.76□□□□□ -0.69
VRK3-217ENST00000599538 PHLDA3Q9Y5J5 127 aa10.76□□□□□ -0.69
VRK3-217ENST00000599538 TRAV9-2A0A087WT02 112 aa10.75□□□□□ -0.69
VRK3-217ENST00000599538 A0A1W2PRX2 142 aa10.75□□□□□ -0.69
VRK3-217ENST00000599538 IGLC3P0DOY3 106 aa10.75□□□□□ -0.69
VRK3-217ENST00000599538 TMEM61Q8N0U2 210 aa10.75□□□□□ -0.69
VRK3-217ENST00000599538 C14orf178Q8N769 122 aaPredicted RBP10.75□□□□□ -0.69
VRK3-217ENST00000599538 OR2K2Q8NGT1 345 aa10.75□□□□□ -0.69
VRK3-217ENST00000599538 TP73-AS1Q9UF72 201 aa10.75□□□□□ -0.69
VRK3-217ENST00000599538 NIPBLQ6KC79 2804 aaeCLIP10.75□□□□□ -0.69
VRK3-217ENST00000599538 hDV102S1A0JD36 115 aa10.75□□□□□ -0.69
VRK3-217ENST00000599538 SMIM15Q7Z3B0 74 aa10.75□□□□□ -0.69
VRK3-217ENST00000599538 TEX29Q8N6K0 151 aa10.75□□□□□ -0.69
VRK3-217ENST00000599538 IGLV2-18A0A075B6J9 118 aa10.74□□□□□ -0.69
VRK3-217ENST00000599538 C7orf71A4D174 169 aa10.74□□□□□ -0.69
VRK3-217ENST00000599538 KNCNA6PVL3 124 aa10.74□□□□□ -0.69
VRK3-217ENST00000599538 FAM159AQ6UWV7 190 aa10.74□□□□□ -0.69
VRK3-217ENST00000599538 HBDP02042 147 aa10.73□□□□□ -0.69
VRK3-217ENST00000599538 CD28P10747 220 aa10.73□□□□□ -0.69
VRK3-217ENST00000599538 PET117Q6UWS5 81 aa10.73□□□□□ -0.69
VRK3-217ENST00000599538 AMTNQ6UX39 209 aa10.73□□□□□ -0.69
VRK3-217ENST00000599538 RAX2Q96IS3 184 aa10.73□□□□□ -0.69
VRK3-217ENST00000599538 JPT2Q9H910 190 aa10.73□□□□□ -0.69
VRK3-217ENST00000599538 LAMTOR2Q9Y2Q5 125 aa10.73□□□□□ -0.69
VRK3-217ENST00000599538 CD7P09564 240 aa10.73□□□□□ -0.69
VRK3-217ENST00000599538 DEFB131AP59861 70 aa10.73□□□□□ -0.69
VRK3-217ENST00000599538 LINC01545Q5VT33 79 aa10.73□□□□□ -0.69
VRK3-217ENST00000599538 LINC01546A6NGU7 62 aa10.72□□□□□ -0.69
VRK3-217ENST00000599538 ZMAT5Q9UDW3 170 aaKnown RBP10.72□□□□□ -0.69
VRK3-217ENST00000599538 MED14OSP0DP75 135 aa10.72□□□□□ -0.69
VRK3-217ENST00000599538 LEPP41159 167 aa10.72□□□□□ -0.69
VRK3-217ENST00000599538 CDKN1BP46527 198 aa10.72□□□□□ -0.69
VRK3-217ENST00000599538 C18orf15Q96N68 181 aa10.72□□□□□ -0.69
VRK3-217ENST00000599538 ODF3Q96PU9 254 aa10.72□□□□□ -0.69
VRK3-217ENST00000599538 MDFICQ9P1T7 246 aa10.72□□□□□ -0.69
VRK3-217ENST00000599538 A0A1B0GV90 55 aa10.71□□□□□ -0.69
VRK3-217ENST00000599538 TCAPO15273 167 aa10.71□□□□□ -0.69
VRK3-217ENST00000599538 HIVEP2P31629 2446 aa10.71□□□□□ -0.69
VRK3-217ENST00000599538 FOXI2Q6ZQN5 318 aa10.71□□□□□ -0.69
VRK3-217ENST00000599538 LINC01006Q8NI28 216 aa10.71□□□□□ -0.69
VRK3-217ENST00000599538 RPL39LQ96EH5 51 aaKnown RBP10.71□□□□□ -0.69
VRK3-217ENST00000599538 NXT2Q9NPJ8 142 aaKnown RBP10.71□□□□□ -0.69
VRK3-217ENST00000599538 PEMTQ9UBM1 199 aa10.71□□□□□ -0.69
VRK3-217ENST00000599538 C20orf202A1L168 122 aa10.7□□□□□ -0.7
VRK3-217ENST00000599538 MGPP08493 103 aa10.7□□□□□ -0.7
VRK3-217ENST00000599538 RBMY1A1P0DJD3 496 aaKnown RBP10.7□□□□□ -0.7
VRK3-217ENST00000599538 RBMY1CP0DJD4 496 aa10.7□□□□□ -0.7
VRK3-217ENST00000599538 RBMY1FQ15415 496 aaKnown RBP10.7□□□□□ -0.7
VRK3-217ENST00000599538 Q8N8P6 123 aa10.7□□□□□ -0.7
VRK3-217ENST00000599538 RASL10AQ92737 203 aa10.7□□□□□ -0.7
VRK3-217ENST00000599538 CITED2Q99967 270 aaPredicted RBP10.7□□□□□ -0.7
VRK3-217ENST00000599538 DPH3P1Q9H4G8 78 aa10.7□□□□□ -0.7
VRK3-217ENST00000599538 UQCR10Q9UDW1 63 aa10.7□□□□□ -0.7
VRK3-217ENST00000599538 OTOGQ6ZRI0 2925 aa10.7□□□□□ -0.7
VRK3-217ENST00000599538 SETXQ7Z333 2677 aaKnown RBP10.7□□□□□ -0.7
VRK3-217ENST00000599538 RBMY1BA6NDE4 496 aaKnown RBP10.7□□□□□ -0.7
VRK3-217ENST00000599538 RBMY1EA6NEQ0 496 aaKnown RBP10.7□□□□□ -0.7
VRK3-217ENST00000599538 RBMY1DP0C7P1 496 aaKnown RBP10.7□□□□□ -0.7
VRK3-217ENST00000599538 DEFB114Q30KQ6 69 aa10.7□□□□□ -0.7
VRK3-217ENST00000599538 CD300EQ496F6 205 aaPredicted RBP10.7□□□□□ -0.7
VRK3-217ENST00000599538 Q8N1Y9 231 aa10.7□□□□□ -0.7
VRK3-217ENST00000599538 NXPH4O95158 308 aa10.69□□□□□ -0.7
VRK3-217ENST00000599538 LINC00315P59091 139 aa10.69□□□□□ -0.7
VRK3-217ENST00000599538 Q6ZN92 141 aa10.69□□□□□ -0.7
VRK3-217ENST00000599538 TMEM158Q8WZ71 300 aa10.69□□□□□ -0.7
VRK3-217ENST00000599538 IFI27L1Q96BM0 104 aa10.69□□□□□ -0.7
VRK3-217ENST00000599538 MRAP2Q96G30 205 aa10.69□□□□□ -0.7
VRK3-217ENST00000599538 C2orf88Q9BSF0 95 aa10.69□□□□□ -0.7
VRK3-217ENST00000599538 KIF25-AS1Q9Y6Z4 181 aa10.69□□□□□ -0.7
VRK3-217ENST00000599538 IGHV3-16A0A0C4DH30 117 aa10.69□□□□□ -0.7
VRK3-217ENST00000599538 PRSS47A8MTI9 375 aa10.69□□□□□ -0.7
VRK3-217ENST00000599538 M0R143 59 aa10.69□□□□□ -0.7
VRK3-217ENST00000599538 DUSP14O95147 198 aaKnown RBP10.69□□□□□ -0.7
VRK3-217ENST00000599538 PRM2P04554 102 aa10.69□□□□□ -0.7
VRK3-217ENST00000599538 RNASE1P07998 156 aaKnown RBP10.69□□□□□ -0.7
VRK3-217ENST00000599538 FCER1GP30273 86 aa10.69□□□□□ -0.7
VRK3-217ENST00000599538 DYNLRB2Q8TF09 96 aa10.69□□□□□ -0.7
VRK3-217ENST00000599538 A0A087WWL8 130 aa10.67□□□□□ -0.7
VRK3-217ENST00000599538 H3BMM0 161 aa10.67□□□□□ -0.7
VRK3-217ENST00000599538 CCL24O00175 119 aa10.67□□□□□ -0.7
VRK3-217ENST00000599538 FHL3Q13643 280 aa10.67□□□□□ -0.7
VRK3-217ENST00000599538 DEFB125Q8N687 156 aa10.67□□□□□ -0.7
VRK3-217ENST00000599538 C9orf85Q96MD7 179 aa10.67□□□□□ -0.7
VRK3-217ENST00000599538 AP1S3Q96PC3 154 aa10.67□□□□□ -0.7
VRK3-217ENST00000599538 MAP6D1Q9H9H5 199 aa10.67□□□□□ -0.7
VRK3-217ENST00000599538 IGHV1OR15-1A0A075B7D0 117 aa10.67□□□□□ -0.7
VRK3-217ENST00000599538 HLA-DRB4P13762 266 aa10.67□□□□□ -0.7
VRK3-217ENST00000599538 LINC00469Q8N7U9 141 aa10.67□□□□□ -0.7
VRK3-217ENST00000599538 HLA-DRB4X5D2U9 266 aa10.67□□□□□ -0.7
VRK3-217ENST00000599538 TSPOP30536 169 aa10.66□□□□□ -0.7
VRK3-217ENST00000599538 SMIM2Q9BVW6 85 aa10.66□□□□□ -0.7
VRK3-217ENST00000599538 ZNF256Q9Y2P7 627 aaPredicted RBP10.66□□□□□ -0.7
VRK3-217ENST00000599538 HNRNPA3P51991 378 aaKnown RBP10.66□□□□□ -0.7
VRK3-217ENST00000599538 BATFQ16520 125 aa10.66□□□□□ -0.7
VRK3-217ENST00000599538 DEFB104AQ8WTQ1 72 aa10.66□□□□□ -0.7
VRK3-217ENST00000599538 DKK2Q9UBU2 259 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 90 ms