RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 ALG5Q9Y673 324 aa10.52□□□□□ -0.73
CLK3-211ENST00000563297 DMBT1Q9UGM3 2413 aaPredicted RBP10.52□□□□□ -0.73
CLK3-211ENST00000563297 GGTLC3B5MD39 225 aa10.51□□□□□ -0.73
CLK3-211ENST00000563297 IGHV3-30P01768 117 aa10.51□□□□□ -0.73
CLK3-211ENST00000563297 IGHV3-33P01772 117 aa10.51□□□□□ -0.73
CLK3-211ENST00000563297 IGHV3-30-3P0DP02 117 aa10.51□□□□□ -0.73
CLK3-211ENST00000563297 IGHV3-30-5P0DP03 117 aa10.51□□□□□ -0.73
CLK3-211ENST00000563297 Q6ZSN1 163 aa10.51□□□□□ -0.73
CLK3-211ENST00000563297 ATP6V0E2Q8NHE4 81 aa10.51□□□□□ -0.73
CLK3-211ENST00000563297 NTN5Q8WTR8 489 aaPredicted RBP10.51□□□□□ -0.73
CLK3-211ENST00000563297 AQP10Q96PS8 301 aa10.51□□□□□ -0.73
CLK3-211ENST00000563297 GTSF1LQ9H1H1 148 aa10.51□□□□□ -0.73
CLK3-211ENST00000563297 SRRM2Q9UQ35 2752 aaKnown RBP10.5□□□□□ -0.73
CLK3-211ENST00000563297 CXorf1O96002 111 aa10.5□□□□□ -0.73
CLK3-211ENST00000563297 MBP02144 154 aa10.5□□□□□ -0.73
CLK3-211ENST00000563297 MGST1P10620 155 aaKnown RBP10.5□□□□□ -0.73
CLK3-211ENST00000563297 HAMPP81172 84 aa10.5□□□□□ -0.73
CLK3-211ENST00000563297 Q8N814 137 aa10.5□□□□□ -0.73
CLK3-211ENST00000563297 CYB561D1Q8N8Q1 229 aa10.5□□□□□ -0.73
CLK3-211ENST00000563297 TMEM167BQ9NRX6 74 aa10.5□□□□□ -0.73
CLK3-211ENST00000563297 TNFSF18Q9UNG2 199 aa10.5□□□□□ -0.73
CLK3-211ENST00000563297 IGKV3D-20A0A0C4DH25 116 aa10.49□□□□□ -0.73
CLK3-211ENST00000563297 ZFP69Q49AA0 526 aa10.49□□□□□ -0.73
CLK3-211ENST00000563297 SAPCD1Q5SSQ6 148 aa10.49□□□□□ -0.73
CLK3-211ENST00000563297 LINC00479Q96M42 142 aa10.49□□□□□ -0.73
CLK3-211ENST00000563297 TMEM70Q9BUB7 260 aa10.49□□□□□ -0.73
CLK3-211ENST00000563297 ACTR3CQ9C0K3 210 aaPredicted RBP10.49□□□□□ -0.73
CLK3-211ENST00000563297 SH3BGRL3Q9H299 93 aa10.49□□□□□ -0.73
CLK3-211ENST00000563297 TRAV34A0A0B4J273 112 aa10.48□□□□□ -0.73
CLK3-211ENST00000563297 FAM229AH3BQW9 127 aa10.48□□□□□ -0.73
CLK3-211ENST00000563297 Q5BKY6 102 aa10.48□□□□□ -0.73
CLK3-211ENST00000563297 A0A1W2PRE2 83 aa10.47□□□□□ -0.73
CLK3-211ENST00000563297 ZFP2Q6ZN57 461 aa10.47□□□□□ -0.73
CLK3-211ENST00000563297 Q8N3U1 123 aa10.47□□□□□ -0.73
CLK3-211ENST00000563297 MED28Q9H204 178 aa10.47□□□□□ -0.73
CLK3-211ENST00000563297 PARLQ9H300 379 aa10.47□□□□□ -0.73
CLK3-211ENST00000563297 FAM30AQ9NZY2 134 aa10.47□□□□□ -0.73
CLK3-211ENST00000563297 Q9UF83 564 aa10.47□□□□□ -0.73
CLK3-211ENST00000563297 GAGE12JA6NER3 117 aa10.46□□□□□ -0.73
CLK3-211ENST00000563297 FABP5P3A8MUU1 101 aa10.46□□□□□ -0.73
CLK3-211ENST00000563297 A8MWV9 139 aa10.46□□□□□ -0.73
CLK3-211ENST00000563297 PTTG1O95997 202 aa10.46□□□□□ -0.73
CLK3-211ENST00000563297 S100A4P26447 101 aaKnown RBP10.46□□□□□ -0.73
CLK3-211ENST00000563297 GAGE1Q13065 139 aa10.46□□□□□ -0.73
CLK3-211ENST00000563297 GAGE4Q13068 117 aa10.46□□□□□ -0.73
CLK3-211ENST00000563297 GAGE5Q13069 117 aa10.46□□□□□ -0.73
CLK3-211ENST00000563297 LAGE3Q14657 143 aa10.46□□□□□ -0.73
CLK3-211ENST00000563297 GAGE13Q4V321 117 aa10.46□□□□□ -0.73
CLK3-211ENST00000563297 PIK3CD-AS1Q5SR53 167 aa10.46□□□□□ -0.73
CLK3-211ENST00000563297 JPT2Q9H910 190 aa10.46□□□□□ -0.73
CLK3-211ENST00000563297 MYCBP2O75592 4640 aa10.46□□□□□ -0.74
CLK3-211ENST00000563297 DNAH8Q96JB1 4490 aa10.45□□□□□ -0.74
CLK3-211ENST00000563297 LINC00694P0DN24 101 aa10.45□□□□□ -0.74
CLK3-211ENST00000563297 WFDC2Q14508 124 aa10.45□□□□□ -0.74
CLK3-211ENST00000563297 ZNF726P1Q15940 193 aa10.45□□□□□ -0.74
CLK3-211ENST00000563297 LGALSLQ3ZCW2 172 aaPredicted RBP10.45□□□□□ -0.74
CLK3-211ENST00000563297 RPL7L1Q6DKI1 246 aaKnown RBP10.45□□□□□ -0.74
CLK3-211ENST00000563297 OR2T35Q8NGX2 323 aa10.45□□□□□ -0.74
CLK3-211ENST00000563297 TM2D2Q9BX73 214 aa10.45□□□□□ -0.74
CLK3-211ENST00000563297 ARL2-SNX15V9GYD0 113 aa10.45□□□□□ -0.74
CLK3-211ENST00000563297 IFNA7P01567 189 aa10.44□□□□□ -0.74
CLK3-211ENST00000563297 DMRTA1Q5VZB9 504 aa10.44□□□□□ -0.74
CLK3-211ENST00000563297 UFSP1Q6NVU6 142 aa10.44□□□□□ -0.74
CLK3-211ENST00000563297 SAMD10Q9BYL1 202 aa10.44□□□□□ -0.74
CLK3-211ENST00000563297 IL36BQ9NZH7 164 aa10.44□□□□□ -0.74
CLK3-211ENST00000563297 RNF222A6NCQ9 220 aa10.43□□□□□ -0.74
CLK3-211ENST00000563297 C1QBP02746 253 aa10.43□□□□□ -0.74
CLK3-211ENST00000563297 ASIPP42127 132 aa10.43□□□□□ -0.74
CLK3-211ENST00000563297 CRIP1P50238 77 aa10.43□□□□□ -0.74
CLK3-211ENST00000563297 UBE2G2P60604 165 aa10.43□□□□□ -0.74
CLK3-211ENST00000563297 DAZ4Q86SG3 579 aaKnown RBP10.43□□□□□ -0.74
CLK3-211ENST00000563297 C14orf178Q8N769 122 aaPredicted RBP10.43□□□□□ -0.74
CLK3-211ENST00000563297 INO80EQ8NBZ0 244 aaPredicted RBP10.43□□□□□ -0.74
CLK3-211ENST00000563297 DAZ3Q9NR90 486 aaKnown RBP10.43□□□□□ -0.74
CLK3-211ENST00000563297 TRAV8-3A0A0A6YYJ7 113 aa10.42□□□□□ -0.74
CLK3-211ENST00000563297 CTXND1A0A1B0GTU2 59 aa10.42□□□□□ -0.74
CLK3-211ENST00000563297 B4DEV8 164 aa10.42□□□□□ -0.74
CLK3-211ENST00000563297 PEX7O00628 323 aa10.42□□□□□ -0.74
CLK3-211ENST00000563297 GIPP09681 153 aaPredicted RBP10.42□□□□□ -0.74
CLK3-211ENST00000563297 DNLZQ5SXM8 178 aa10.42□□□□□ -0.74
CLK3-211ENST00000563297 BORCS7-ASMTA0A0B4J1R7 106 aa10.41□□□□□ -0.74
CLK3-211ENST00000563297 FAM74A7A6NL05 159 aa10.41□□□□□ -0.74
CLK3-211ENST00000563297 KRBOX1C9JBD0 128 aa10.41□□□□□ -0.74
CLK3-211ENST00000563297 ARMS2P0C7Q2 107 aa10.41□□□□□ -0.74
CLK3-211ENST00000563297 FGF8P55075 233 aaPredicted RBP10.41□□□□□ -0.74
CLK3-211ENST00000563297 Q6ZNX1 250 aa10.41□□□□□ -0.74
CLK3-211ENST00000563297 HIST1H2BAQ96A08 127 aa10.41□□□□□ -0.74
CLK3-211ENST00000563297 A0A087WWC5 75 aa10.4□□□□□ -0.74
CLK3-211ENST00000563297 GRIFINA4D1Z8 144 aa10.4□□□□□ -0.74
CLK3-211ENST00000563297 H3BVH4 76 aa10.4□□□□□ -0.74
CLK3-211ENST00000563297 LECT2O14960 151 aa10.4□□□□□ -0.74
CLK3-211ENST00000563297 COX8CQ7Z4L0 72 aa10.4□□□□□ -0.74
CLK3-211ENST00000563297 Q86TA4 180 aa10.4□□□□□ -0.74
CLK3-211ENST00000563297 ZC2HC1AQ96GY0 325 aa10.4□□□□□ -0.74
CLK3-211ENST00000563297 NKX6-2Q9C056 277 aaPredicted RBP10.4□□□□□ -0.74
CLK3-211ENST00000563297 FXYD6-FXYD2A0A087WZ82 144 aa10.39□□□□□ -0.75
CLK3-211ENST00000563297 M0R036 132 aa10.39□□□□□ -0.75
CLK3-211ENST00000563297 TOR2AQ5JU69 321 aa10.39□□□□□ -0.75
CLK3-211ENST00000563297 Q6ZSA8 131 aa10.39□□□□□ -0.75
CLK3-211ENST00000563297 SYT8Q8NBV8 401 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms