RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 ZNF462Q96JM2 2506 aa4.3□□□□□ -1.72
LIMA1-203ENST00000547825 MAP1AP78559 2803 aaPredicted RBP4.3□□□□□ -1.72
LIMA1-203ENST00000547825 FN1P02751 2386 aaKnown RBP4.3□□□□□ -1.72
LIMA1-203ENST00000547825 ASIPP42127 132 aa4.29□□□□□ -1.72
LIMA1-203ENST00000547825 MEIG1Q5JSS6 88 aa4.29□□□□□ -1.72
LIMA1-203ENST00000547825 FAM167A-AS1Q96KT0 104 aa4.29□□□□□ -1.72
LIMA1-203ENST00000547825 ERG28Q9UKR5 140 aa4.29□□□□□ -1.72
LIMA1-203ENST00000547825 CMYA5Q8N3K9 4069 aa4.29□□□□□ -1.72
LIMA1-203ENST00000547825 ANK2Q01484 3957 aa4.29□□□□□ -1.72
LIMA1-203ENST00000547825 IGHV3-73A0A0B4J1V6 119 aa4.29□□□□□ -1.72
LIMA1-203ENST00000547825 KRTAP23-1A1A580 65 aa4.29□□□□□ -1.72
LIMA1-203ENST00000547825 NBR2O15453 112 aa4.29□□□□□ -1.72
LIMA1-203ENST00000547825 CD7P09564 240 aa4.29□□□□□ -1.72
LIMA1-203ENST00000547825 C12orf74Q32Q52 190 aa4.29□□□□□ -1.72
LIMA1-203ENST00000547825 HIVEP3Q5T1R4 2406 aa4.29□□□□□ -1.72
LIMA1-203ENST00000547825 IGHV1-3A0A0C4DH29 117 aa4.29□□□□□ -1.72
LIMA1-203ENST00000547825 IGLV2-8P01709 118 aa4.29□□□□□ -1.72
LIMA1-203ENST00000547825 IGHV1-8P0DP01 117 aa4.29□□□□□ -1.72
LIMA1-203ENST00000547825 KLF5Q13887 457 aaPredicted RBP4.29□□□□□ -1.72
LIMA1-203ENST00000547825 C15orf32Q32M92 178 aa4.29□□□□□ -1.72
LIMA1-203ENST00000547825 LGALS9BQ3B8N2 356 aa4.29□□□□□ -1.72
LIMA1-203ENST00000547825 LGALS9CQ6DKI2 356 aa4.29□□□□□ -1.72
LIMA1-203ENST00000547825 IL17DQ8TAD2 202 aa4.29□□□□□ -1.72
LIMA1-203ENST00000547825 ZNF625Q96I27 306 aaPredicted RBP4.29□□□□□ -1.72
LIMA1-203ENST00000547825 RITA1Q96K30 269 aa4.29□□□□□ -1.72
LIMA1-203ENST00000547825 C20orf78Q9BR46 151 aa4.29□□□□□ -1.72
LIMA1-203ENST00000547825 MLST8Q9BVC4 326 aa4.29□□□□□ -1.72
LIMA1-203ENST00000547825 NCOR1P1Q9H4R4 102 aa4.29□□□□□ -1.72
LIMA1-203ENST00000547825 TRBV19A0A075B6N1 114 aa4.28□□□□□ -1.72
LIMA1-203ENST00000547825 G3V4G9 280 aa4.28□□□□□ -1.72
LIMA1-203ENST00000547825 RS1O15537 224 aa4.28□□□□□ -1.72
LIMA1-203ENST00000547825 IGHG3P01860 377 aa4.28□□□□□ -1.72
LIMA1-203ENST00000547825 TRGV3P03979 118 aa4.28□□□□□ -1.72
LIMA1-203ENST00000547825 CRYBA4P53673 196 aa4.28□□□□□ -1.72
LIMA1-203ENST00000547825 FOXE3Q13461 319 aa4.28□□□□□ -1.72
LIMA1-203ENST00000547825 LINC01545Q5VT33 79 aa4.28□□□□□ -1.72
LIMA1-203ENST00000547825 KLHL30-AS1Q8NEE0 82 aa4.28□□□□□ -1.72
LIMA1-203ENST00000547825 IGF2BP2-AS1Q96M15 143 aa4.28□□□□□ -1.72
LIMA1-203ENST00000547825 SLC25A15Q9Y619 301 aa4.28□□□□□ -1.72
LIMA1-203ENST00000547825 TRAV8-4A0A0B4J246 113 aa4.28□□□□□ -1.72
LIMA1-203ENST00000547825 F8W1H4 67 aa4.28□□□□□ -1.72
LIMA1-203ENST00000547825 H7C1H1 209 aa4.28□□□□□ -1.72
LIMA1-203ENST00000547825 PVRIGQ6DKI7 326 aa4.28□□□□□ -1.72
LIMA1-203ENST00000547825 ZNF562Q6V9R5 426 aa4.28□□□□□ -1.72
LIMA1-203ENST00000547825 CEND1Q8N111 149 aa4.28□□□□□ -1.72
LIMA1-203ENST00000547825 SMIM20Q8N5G0 67 aa4.28□□□□□ -1.72
LIMA1-203ENST00000547825 LINC00477Q96M19 166 aa4.28□□□□□ -1.72
LIMA1-203ENST00000547825 PRADC1Q9BSG0 188 aa4.28□□□□□ -1.72
LIMA1-203ENST00000547825 VCX2Q9H322 139 aa4.28□□□□□ -1.72
LIMA1-203ENST00000547825 CYSRT1A8MQ03 144 aa4.28□□□□□ -1.72
LIMA1-203ENST00000547825 TMEM262E9PQX1 116 aa4.28□□□□□ -1.72
LIMA1-203ENST00000547825 CCL21O00585 134 aa4.28□□□□□ -1.72
LIMA1-203ENST00000547825 EGR2P11161 476 aaPredicted RBP4.28□□□□□ -1.72
LIMA1-203ENST00000547825 IL17RELQ6ZVW7 336 aa4.28□□□□□ -1.72
LIMA1-203ENST00000547825 Q71RC1 249 aaPredicted RBP4.28□□□□□ -1.72
LIMA1-203ENST00000547825 OR13C6PQ8NH95 151 aa4.28□□□□□ -1.72
LIMA1-203ENST00000547825 SPXQ9BT56 116 aa4.28□□□□□ -1.72
LIMA1-203ENST00000547825 GFRA4Q9GZZ7 299 aa4.28□□□□□ -1.72
LIMA1-203ENST00000547825 TOMM7Q9P0U1 55 aa4.28□□□□□ -1.72
LIMA1-203ENST00000547825 APCP25054 2843 aa4.28□□□□□ -1.72
LIMA1-203ENST00000547825 TRAV8-3A0A0A6YYJ7 113 aa4.27□□□□□ -1.73
LIMA1-203ENST00000547825 PRR30Q53SZ7 412 aaPredicted RBP4.27□□□□□ -1.73
LIMA1-203ENST00000547825 TMEM219Q86XT9 240 aa4.27□□□□□ -1.73
LIMA1-203ENST00000547825 RNASE6Q93091 150 aaKnown RBP4.27□□□□□ -1.73
LIMA1-203ENST00000547825 SHANK2-AS3Q9BTD1 123 aa4.27□□□□□ -1.73
LIMA1-203ENST00000547825 ZNF492Q9P255 531 aa4.27□□□□□ -1.73
LIMA1-203ENST00000547825 IGLL5B9A064 214 aa4.27□□□□□ -1.73
LIMA1-203ENST00000547825 ORMDL2Q53FV1 153 aa4.27□□□□□ -1.73
LIMA1-203ENST00000547825 C2orf82Q6UX34 121 aa4.27□□□□□ -1.73
LIMA1-203ENST00000547825 WIPF2Q8TF74 440 aaPredicted RBP4.27□□□□□ -1.73
LIMA1-203ENST00000547825 SMPXQ9UHP9 88 aa4.27□□□□□ -1.73
LIMA1-203ENST00000547825 PPP1R17O96001 155 aa4.27□□□□□ -1.73
LIMA1-203ENST00000547825 C2orf66Q6UXQ4 117 aa4.27□□□□□ -1.73
LIMA1-203ENST00000547825 CITED1Q99966 193 aa4.27□□□□□ -1.73
LIMA1-203ENST00000547825 FNDC10F2Z333 226 aa4.27□□□□□ -1.73
LIMA1-203ENST00000547825 TMEM178BH3BS89 294 aa4.27□□□□□ -1.73
LIMA1-203ENST00000547825 PLNP26678 52 aa4.27□□□□□ -1.73
LIMA1-203ENST00000547825 TMEM30BQ3MIR4 351 aa4.27□□□□□ -1.73
LIMA1-203ENST00000547825 SPAG8Q99932 426 aaPredicted RBP4.27□□□□□ -1.73
LIMA1-203ENST00000547825 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP4.26□□□□□ -1.73
LIMA1-203ENST00000547825 PSMG4Q5JS54 123 aa4.26□□□□□ -1.73
LIMA1-203ENST00000547825 FOXI2Q6ZQN5 318 aa4.26□□□□□ -1.73
LIMA1-203ENST00000547825 NTN5Q8WTR8 489 aaPredicted RBP4.26□□□□□ -1.73
LIMA1-203ENST00000547825 TM2D2Q9BX73 214 aa4.26□□□□□ -1.73
LIMA1-203ENST00000547825 PRSS46E5RG02 174 aa4.26□□□□□ -1.73
LIMA1-203ENST00000547825 MYMXA0A1B0GTQ4 84 aa4.26□□□□□ -1.73
LIMA1-203ENST00000547825 A4D1N5 150 aa4.26□□□□□ -1.73
LIMA1-203ENST00000547825 DNAL4O96015 105 aa4.26□□□□□ -1.73
LIMA1-203ENST00000547825 FGF6P10767 208 aa4.26□□□□□ -1.73
LIMA1-203ENST00000547825 CIRBPQ14011 172 aaKnown RBP4.26□□□□□ -1.73
LIMA1-203ENST00000547825 ZNF876PQ49A33 203 aa4.26□□□□□ -1.73
LIMA1-203ENST00000547825 BOD1L2Q8IYS8 172 aa4.26□□□□□ -1.73
LIMA1-203ENST00000547825 EEF1AKMT3Q96AZ1 226 aa4.26□□□□□ -1.73
LIMA1-203ENST00000547825 KLF12Q9Y4X4 402 aa4.26□□□□□ -1.73
LIMA1-203ENST00000547825 IGKV2D-26A0A0A0MRZ7 120 aa4.25□□□□□ -1.73
LIMA1-203ENST00000547825 BUB1B-PAK6H3BSN5 160 aa4.25□□□□□ -1.73
LIMA1-203ENST00000547825 INSL3P51460 131 aa4.25□□□□□ -1.73
LIMA1-203ENST00000547825 RRN3P1Q2M238 152 aa4.25□□□□□ -1.73
LIMA1-203ENST00000547825 RNASE13Q5GAN3 156 aaKnown RBP4.25□□□□□ -1.73
LIMA1-203ENST00000547825 TEX36Q5VZQ5 186 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 168.5 ms